mRNA_H-elongata_contig198293.5552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198293.5552.1
Unique NamemRNA_H-elongata_contig198293.5552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 4.270e-19
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYGEKPLQQ 369
            T  EA  SSE PQWK AI SE+        W++V+ P G   LG R +FKRK+  DG I+ YK  LV +G+RQ +G+ Y ++  P    TSIRMVL+I A    +  Q+DV   +    L++
Sbjct:   32 TYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEE 153          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177T913_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T913_9BASI)

HSP 1 Score: 93.2 bits (230), Expect = 6.640e-19
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYG----EKPL---QQSTNEACGHQALHC 408
            T+ +A   ++W  W +A+  EM   +  G W + E P+ + ++G+R VFK K+D +G +  YK  LV QGF Q+ G+ Y E+  P     +IR +L++ A LGW   QLDV   Y     +KP+   Q    E  G + L C
Sbjct:  664 TLKDAMRRTDWALWLQAMREEMESHSEMGTWVLEEVPEDRELVGSRWVFKLKLDSEGNVARYKARLVAQGFSQIPGVDYNETYSPVTRFVTIRTLLALAAFLGWHVHQLDVITAYLYGLLDKPVFMRQPPGFEVAGKEHLAC 805          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 93.2 bits (230), Expect = 6.670e-19
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYGEKPLQQ 369
            T  EA+  S+W +W +A+  +M    G   W +V+ P G+  +G+R V+K K+D++GK + +K  LV QGF QV G+ Y E+  P     S+R++L++ A  GW   Q+DV   Y    L++
Sbjct:  734 TYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEE 855          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: D1MBJ6_AGABI (Polyprotein n=1 Tax=Agaricus bisporus var. bisporus TaxID=192523 RepID=D1MBJ6_AGABI)

HSP 1 Score: 93.2 bits (230), Expect = 6.740e-19
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
            T  EA   ++WP WK+A+  E+A     G W++V+CP G  ++G++ VFK K D  G I  YK  LV QG+ Q+ G+ Y ++  P    +SIR VL+I  A   E  Q+DV   Y
Sbjct:  883 TWKEATQRTDWPLWKKAMEEELATLQAAGTWELVDCPLGINIVGSKWVFKAKKDAAGNIVRYKARLVAQGYSQIPGVDYFDTFAPVARLSSIRTVLAIATARNLEIHQIDVKGAY 997          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177VQ04_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VQ04_9BASI)

HSP 1 Score: 92.4 bits (228), Expect = 1.220e-18
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
            T+ +A   S+W QW +A+  EM   +  G W + + P  + ++G+R VFK K+D +G +  YK  LV QGF Q+ G+ Y E+  P     +IR +L++ A  GW+  QLDV   Y
Sbjct:  612 TLKDAMRRSDWAQWLQAMREEMESHSEMGTWVLEKVPDDRELVGSRWVFKLKLDSEGAVSRYKARLVAQGFSQIFGVDYNETYSPVTRFVTIRTLLALAAYFGWQIHQLDVVTAY 726          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177VM49_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VM49_9BASI)

HSP 1 Score: 92.0 bits (227), Expect = 1.670e-18
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
            T+ +A   ++W  W  A+  E+A  T  G W + E P  + ++G+R VFK K+D DG +  YK  LV QGF QV G+ + E+  P     +IR +L++ A LGW   QLDV   Y
Sbjct:  637 TLKDAMRRTDWGLWLEAMKEEIASHTEMGTWVLEELPADRDLVGSRWVFKLKLDTDGCVARYKARLVAQGFSQVPGVDFHETYSPVTRFVTIRTLLALAAYLGWHVHQLDVVTAY 751          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI)

HSP 1 Score: 91.3 bits (225), Expect = 2.660e-18
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   25 SSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
            S+EW QWK+A+  E+A  T  G W +VE   G  ++G+R V+K K+D+DG    YK  LV QGF Q +GI ++E+  P     ++R+V+S+  ALG     +D+   Y
Sbjct:   34 SAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAY 141          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177VSQ5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VSQ5_9BASI)

HSP 1 Score: 91.3 bits (225), Expect = 3.120e-18
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   25 SSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
            S+EW QWK+A+  E+A  T  G W +VE   G  ++G+R V+K K+D+DG    YK  LV QGF Q +GI ++E+  P     ++R+V+S+  ALG     +D+   Y
Sbjct:  703 SAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAY 810          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A2U1QLY4_ARTAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QLY4_ARTAN)

HSP 1 Score: 90.9 bits (224), Expect = 3.820e-18
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 TTMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYGEKPLQQ 369
            T+  EA  SSE PQWK AI SE+        W++V+ P G   LG + +FK+K+  DG I+ YK  LV +GFRQ +G+ Y ++  P    TSIRM+L+I A    E  Q+DV   +    L++
Sbjct:  101 TSYREAVTSSEGPQWKEAIKSEIDSILQNHTWELVDLPPGCKPLGYKWIFKKKMKADGTIDKYKARLVIKGFRQREGLDYFDTYLPVTRITSIRMILAIAALRNLEVHQMDVKTAFLNGDLEE 223          
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 90.9 bits (224), Expect = 4.210e-18
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYG----EKPL---QQSTNEACGHQALHC 408
            T+ +A    +W +W  A+  E+      G W++ E P+G+ V+G+R VFK K+D  G +  YK  LV QGF Q+ G+ Y+E+  P     SIR +L++ A   W   QLDV   Y     ++P+   Q +  EA G + L C
Sbjct:  609 TLKDAMRRPDWAKWLEAMREEIDSHMEMGTWELAELPEGRDVVGSRWVFKLKLDSAGNVARYKGRLVAQGFSQIPGVDYDETYSPVTRFISIRTLLALAAYFHWHVHQLDVVTAYLYGLLDRPIYMRQPALFEAQGAEHLVC 750          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5R9QKQ6_9BACT4.270e-1941.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177T913_9BASI6.640e-1935.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U1E5_9BASI6.670e-1936.07Integrase catalytic domain-containing protein n=2 ... [more]
D1MBJ6_AGABI6.740e-1940.00Polyprotein n=1 Tax=Agaricus bisporus var. bisporu... [more]
A0A177VQ04_9BASI1.220e-1837.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A177VM49_9BASI1.670e-1839.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A177U0B1_9BASI2.660e-1839.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177VSQ5_9BASI3.120e-1839.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A2U1QLY4_ARTAN3.820e-1840.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U095_9BASI4.210e-1835.21Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198293contigH-elongata_contig198293:266..775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.0
Seed ortholog evalue8.9e-15
Seed eggNOG ortholog3750.XP_008359393.1
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,COG2801@1,KOG0017@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.960023-UTR-H-elongata_contig198293:265..2711622930119.960023-UTR-H-elongata_contig198293:265..271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198293 266..271 +
1691679288.3548074-UTR-H-elongata_contig198293:265..2711691679288.3548074-UTR-H-elongata_contig198293:265..271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198293 266..271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.9763227-CDS-H-elongata_contig198293:271..7751622930119.9763227-CDS-H-elongata_contig198293:271..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198293 272..775 +
1691679288.363957-CDS-H-elongata_contig198293:271..7751691679288.363957-CDS-H-elongata_contig198293:271..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198293 272..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198293.5552.1prot_H-elongata_contig198293.5552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198293 272..775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198293.5552.1

>prot_H-elongata_contig198293.5552.1 ID=prot_H-elongata_contig198293.5552.1|Name=mRNA_H-elongata_contig198293.5552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
MDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKR
KIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAA
LGWEARQLDVDMTYGEKPLQQSTNEACGHQALHCPRRDRGGGGSPRRRSV
RGTARRYPHEVRRRQDI*
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mRNA from alignment at H-elongata_contig198293:266..775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198293.5552.1 ID=mRNA_H-elongata_contig198293.5552.1|Name=mRNA_H-elongata_contig198293.5552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig198293:266..775+ (Himanthalia elongata Himel1 dioecious)
ACAACCATGGACGAGGCGCAAGCGTCGTCAGAGTGGCCGCAATGGAAAAG GGCGATCGCGAGCGAGATGGCTAAGCAAACTGGTCGAGGCGTGTGGCAGG TGGTGGAGTGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTC AAGCGCAAAATCGACAAGGATGGAAAGATCGAGAATTATAAATGTTGTCT CGTGGGGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCT CCTTTCCGACTCCTGCGCAGACCAGCATTAGGATGGTACTTAGCATCATC GCGGCTCTTGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGACCTATGG CGAAAAACCGCTTCAGCAGTCGACGAACGAGGCATGTGGACATCAAGCAT TACATTGTCCGCGACGCGATCGAGGGGGAGGTGGTTCACCTAGAAGACGT TCGGTCCGGGGAACAGCACGCCGATATCCTCACGAAGTCCGTAGACGTCA AGACATTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig198293:266..775+

>mRNA_H-elongata_contig198293.5552.1 ID=mRNA_H-elongata_contig198293.5552.1|Name=mRNA_H-elongata_contig198293.5552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig198293:266..775+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAGGCGCAAGCGTCGTCAGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGAGCGAGATGGCTAAGCAAACTGGTCGAGGCGTGTGGCAGGTGGTGG
AGTGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGC
AAAATCGACAAGGATGGAAAGATCGAGAATTATAAATGTTGTCTCGTGGG
GCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTTTC
CGACTCCTGCGCAGACCAGCATTAGGATGGTACTTAGCATCATCGCGGCT
CTTGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGACCTATGGCGAAAA
ACCGCTTCAGCAGTCGACGAACGAGGCATGTGGACATCAAGCATTACATT
GTCCGCGACGCGATCGAGGGGGAGGTGGTTCACCTAGAAGACGTTCGGTC
CGGGGAACAGCACGCCGATATCCTCACGAAGTCCGTAGACGTCAAGACAT
TTAAATGGACGAGGCGCAAGCGTCGTCAGAGTGGCCGCAATGGAAAAGGG
CGATCGCGAGCGAGATGGCTAAGCAAACTGGTCGAGGCGTGTGGCAGGTG
GTGGAGTGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAA
GCGCAAAATCGACAAGGATGGAAAGATCGAGAATTATAAATGTTGTCTCG
TGGGGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCC
TTTCCGACTCCTGCGCAGACCAGCATTAGGATGGTACTTAGCATCATCGC
GGCTCTTGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGACCTATGGCG
AAAAACCGCTTCAGCAGTCGACGAACGAGGCATGTGGACATCAAGCATTA
CATTGTCCGCGACGCGATCGAGGGGGAGGTGGTTCACCTAGAAGACGTTC
GGTCCGGGGAACAGCACGCCGATATCCTCACGAAGTCCGTAGACGTCAAG
ACATTTAA
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