mRNA_H-elongata_contig196853.5488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196853.5488.1
Unique NamemRNA_H-elongata_contig196853.5488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: D8LC05_ECTSI (Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC05_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 4.440e-22
Identity = 65/135 (48.15%), Postives = 71/135 (52.59%), Query Frame = 3
Query:   81 EITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEELSTYRARRPE---------------------------------------------------------VLMVEPPLNERAQRQEIAAMMFETFKV 314
            E T+V+DVGSSS KAGFSGED+PR V PSV AEDL L+ EELSTYRARRPE                                                         VLMVEPPLNER+QRQE+AAMMFETFKV
Sbjct:    9 EATIVIDVGSSSAKAGFSGEDMPRAVCPSV-AEDLHLSAEELSTYRARRPESRECYLEYGNTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEMAAMMFETFKV 142          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A395IVZ5_9HELO (Uncharacterized protein n=1 Tax=Monilinia fructigena TaxID=38457 RepID=A0A395IVZ5_9HELO)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 3
Query:   63 MAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLS-----LATEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
            MA +++   +V+D GS +++AGF+GEDLP+  + S   +D+      +  E L T     P VL+ EPPLN R+ R   A ++FETF V
Sbjct:    1 MADTLHNAPIVLDNGSGTIRAGFAGEDLPKITWHSYRLDDMERIWEYVYGEGLKTLSEEHP-VLLTEPPLNPRSNRDTAAQILFETFNV 88          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A7S2D3H2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3H2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.100e-8
Identity = 43/122 (35.25%), Postives = 59/122 (48.36%), Query Frame = 3
Query:   75 VNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVV------------------AEDLS-------LATE--------------ELSTY----RARRPEVLMVEPPLNERAQRQEIAAMMFETFK 311
            ++E  +V+D GS S K G+SGED PR++FPSVV                  AED S       + T+              EL TY          VL+ EPPLN++  R+++A +MFETFK
Sbjct:    1 MDEGVIVIDAGSGSTKIGYSGEDTPRSIFPSVVDHPVLNEGTSRRPDVMDGAEDSSVHPVKRGMVTDWDQMERLWDHTFGTELRTYPETGSVNGVPVLLTEPPLNDKKSREQMARLMFETFK 122          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: F0ZR57_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZR57_DICPU)

HSP 1 Score: 56.2 bits (134), Expect = 5.860e-7
Identity = 43/137 (31.39%), Postives = 58/137 (42.34%), Query Frame = 3
Query:   45 KVFRRTMAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLA-----------------------------------------------TEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
            K  R    +S+ E T+VVD GS  VKAGF+GED PR++FPS+V   L  +                                               T EL    ++ P VL+ EPPLN +A R+ +   MFE F+V
Sbjct:  535 KSARIEFLSSIKEKTLVVDNGSGMVKAGFAGEDAPRSIFPSIVGYPLFNSVMHGMGKDKYIGEEAQAKRGVLSIKYPVEHGVITNWNDMESLWEYTFTTELRVDPSKHP-VLLTEPPLNPKANRERMVETMFEVFQV 670          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: UPI001446F697 (Actin-like protein n=1 Tax=Daldinia childiae TaxID=326645 RepID=UPI001446F697)

HSP 1 Score: 55.8 bits (133), Expect = 7.100e-7
Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 3
Query:   63 MAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLA-------------------------------TEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
            M  S++   +V+D GS +++AGF+G+DLP+  FPS V     L                                +E L T     P VL+ EPPLN RA R   A ++FETF V
Sbjct:    1 MTDSLHNAPIVLDNGSGTIRAGFAGDDLPKCYFPSFVGRPKHLRVLAGALEGEIPFRTWHSHRLGRYGEIWEYVYSEGLKTISEEHP-VLLTEPPLNPRANRDTAAQILFETFNV 114          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A6A2YM90_HIBSY (Actin n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YM90_HIBSY)

HSP 1 Score: 54.3 bits (129), Expect = 1.790e-6
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 3
Query:   90 VVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLAT------------EELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETF 308
            +V D G+  VKAGFSG+D PR VFPS+V                    +E  +     P VL+ E PLN +A R+++  +MFETF
Sbjct:   10 LVCDNGTGMVKAGFSGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKLEEHP-VLLTEAPLNPKANREKMTQIMFETF 93          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: F0Y9N8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9N8_AURAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-6
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 3
Query:   90 VVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEELSTYRARRPE 233
            +V+D GS+SVKAG+SGED PR+VFPS++ E  + A   L+    RRPE
Sbjct:    7 IVIDAGSASVKAGYSGEDTPRSVFPSILDEGGAEALSGLARSGGRRPE 54          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A438FEN1_VITVI (Actin n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEN1_VITVI)

HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6
Identity = 39/99 (39.39%), Postives = 51/99 (51.52%), Query Frame = 3
Query:   90 VVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEEL-------------------STYRARR--PE---VLMVEPPLNERAQRQEIAAMMFETFKV 314
            +V D G+  VKAGF+G+D PR VFPS+VA DL      L                   + Y   R  PE   VL+ E PLN +A R+++  +MFETF V
Sbjct:   10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVA-DLDTQVSWLGWAKRMLINWDDMEKIWHHTFYNGLRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 107          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A068VJM6_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068VJM6_COFCA)

HSP 1 Score: 52.8 bits (125), Expect = 6.250e-6
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 3
Query:   84 ITVVVDVGSSSVKAGFSGEDLPRTVFPSVV---------AEDLSLA---TEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
            I +V+  G+ S KAGF+G+D P   FP +V         AE + L     +++     R   VL+ EPPLN +A RQ++  +MFETF V
Sbjct:    9 IPIVIYNGTRSTKAGFAGDDFPLASFPHLVGRTRHIIPLAEGVFLKYFLPQKMLHVDPRDHPVLLTEPPLNPKANRQKLTEIMFETFNV 97          
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A8H6H798_9AGAR (Actin family n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6H798_9AGAR)

HSP 1 Score: 52.8 bits (125), Expect = 8.670e-6
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 3
Query:   90 VVVDVGSSSVKAGFSGEDLPRTVFPS-----------------VVA--EDLSLATEELSTYRARRPE---VLMVEPPLNERAQRQEIAAMMFETFKV 314
            VV++ GSS  KAGF+GED PRTVFP+                 +V   ED+    + +       PE   VL+ E PLN +A+R++ A +MFET+ +
Sbjct:    9 VVIENGSSQCKAGFAGEDGPRTVFPAKGFAYGALAFSHPVENGIVKNWEDMERVWDHVFREIRASPEEHPVLLTESPLNPKAEREKAAQVMFETYNI 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LC05_ECTSI4.440e-2248.15Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A395IVZ5_9HELO1.050e-839.33Uncharacterized protein n=1 Tax=Monilinia fructige... [more]
A0A7S2D3H2_9STRA4.100e-835.25Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0ZR57_DICPU5.860e-731.39Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
UPI001446F6977.100e-733.04Actin-like protein n=1 Tax=Daldinia childiae TaxID... [more]
A0A6A2YM90_HIBSY1.790e-638.82Actin n=1 Tax=Hibiscus syriacus TaxID=106335 RepID... [more]
F0Y9N8_AURAN1.870e-654.17Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A438FEN1_VITVI4.250e-639.39Actin n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A... [more]
A0A068VJM6_COFCA6.250e-638.20Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
A0A8H6H798_9AGAR8.670e-637.11Actin family n=1 Tax=Tulosesus angulatus TaxID=980... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196853contigH-elongata_contig196853:52..973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue6.6e-19
Seed eggNOG ortholog2880.D8LC05
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196853.5488.1prot_H-elongata_contig196853.5488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196853 52..911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930114.370012-CDS-H-elongata_contig196853:51..1321622930114.370012-CDS-H-elongata_contig196853:51..132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196853 52..132 -
1691679286.0920274-CDS-H-elongata_contig196853:51..1321691679286.0920274-CDS-H-elongata_contig196853:51..132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196853 52..132 -
1622930114.3811235-CDS-H-elongata_contig196853:740..9111622930114.3811235-CDS-H-elongata_contig196853:740..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196853 741..911 -
1691679286.1111202-CDS-H-elongata_contig196853:740..9111691679286.1111202-CDS-H-elongata_contig196853:740..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196853 741..911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930114.3915675-UTR-H-elongata_contig196853:911..9731622930114.3915675-UTR-H-elongata_contig196853:911..973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig196853 912..973 -
1691679286.1277847-UTR-H-elongata_contig196853:911..9731691679286.1277847-UTR-H-elongata_contig196853:911..973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig196853 912..973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196853.5488.1

>prot_H-elongata_contig196853.5488.1 ID=prot_H-elongata_contig196853.5488.1|Name=mRNA_H-elongata_contig196853.5488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEELST
YRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV
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mRNA from alignment at H-elongata_contig196853:52..973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196853.5488.1 ID=mRNA_H-elongata_contig196853.5488.1|Name=mRNA_H-elongata_contig196853.5488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=922bp|location=Sequence derived from alignment at H-elongata_contig196853:52..973- (Himanthalia elongata Himel1 dioecious)
GTTCTATGCCCATGGGGTAGTATCTTACGGATTTCGACTTCCCCAAGGTA TTCCGGCGAACTATGGCTGCTTCAGTAAACGAAATCACAGTCGTGGTTGA TGTTGGTAGCTCCAGTGTAAAGGCTGGCTTCTCTGGAGAGGACTTACCCC GGACAGTGTTTCCGTCTGTTGTTGCGGAAGATCTCTCCCTCGCCACCGAG GAACTGTCCACCTATCGTGCTCGGCGACCGGAGGTGTGATACAACATTAG ACACCGTATGCCCATTTGTCGATAGATACGACTTACATTAGTCGTAAGTG GGGTGATTTACGCTCACTCACACCCGGTTTCGCTCGCTTTGACATTTGAA CATAGGCTATAGCTTACAACTATATGGACAATATGAACAATATAATACCT CAGAGCAAGGAGTGTTATCTCGAGTATAGGAGGAAGGAGACCGAGGGAGC CACTAGCGATGAAGCCACGACCTTCGACCATCCCGTGCAGCGTGGTCTGC TTAAAGACATTGAAAAGATGGAAAAGCTTATGGATAACCTCTTCAACCTT GAGCTCGCCACGCATACCGGAGCTCGCACCCCGGTGGGCGATAATACATC TCCTGAGCCTGATCATGCGAAGAGCTAATGCTTTAAGGATTTGAAAAAAA AATGATTTCTCACATAACAAGCTGATGTCAAAATCCAGCCCGTGGTCACA AGGTAGAAAAAGCACCACCCGGAAGGAGAAAAACGTTCAACATACTCTCC AATAAGTTCATGCTATATATAATGTGCTGAAAATAATAACCAAGTTAAAA AGTTCGCACGGTTTCTCAAGCTCGCGCGACGCCCATTGCAGGTCTTGATG GTGGAACCCCCACTAAACGAACGGGCACAGCGGCAAGAGATAGCGGCGAT GATGTTCGAAACCTTCAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig196853:52..973-

>mRNA_H-elongata_contig196853.5488.1 ID=mRNA_H-elongata_contig196853.5488.1|Name=mRNA_H-elongata_contig196853.5488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig196853:52..973- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCTTCAGTAAACGAAATCACAGTCGTGGTTGATGTTGGTAGCTC
CAGTGTAAAGGCTGGCTTCTCTGGAGAGGACTTACCCCGGACAGTGTTTC
CGTCTGTTGTTGCGGAAGATCTCTCCCTCGCCACCGAGGAACTGTCCACC
TATCGTGCTCGGCGACCGGAGATGGCTGCTTCAGTAAACGAAATCACAGT
CGTGGTTGATGTTGGTAGCTCCAGTGTAAAGGCTGGCTTCTCTGGAGAGG
ACTTACCCCGGACAGTGTTTCCGTCTGTTGTTGCGGAAGATCTCTCCCTC
GCCACCGAGGAACTGTCCACCTATCGTGCTCGGCGACCGGAGGTCTTGAT
GGTGGAACCCCCACTAAACGAACGGGCACAGCGGCAAGAGATAGCGGCGA
TGATGTTCGAAACCTTCAAGGTGGTCTTGATGGTGGAACCCCCACTAAAC
GAACGGGCACAGCGGCAAGAGATAGCGGCGATGATGTTCGAAACCTTCAA
GGTG
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