mRNA_H-elongata_contig196853.5488.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: D8LC05_ECTSI (Actin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC05_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 4.440e-22 Identity = 65/135 (48.15%), Postives = 71/135 (52.59%), Query Frame = 3
Query: 81 EITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEELSTYRARRPE---------------------------------------------------------VLMVEPPLNERAQRQEIAAMMFETFKV 314
E T+V+DVGSSS KAGFSGED+PR V PSV AEDL L+ EELSTYRARRPE VLMVEPPLNER+QRQE+AAMMFETFKV
Sbjct: 9 EATIVIDVGSSSAKAGFSGEDMPRAVCPSV-AEDLHLSAEELSTYRARRPESRECYLEYGNTGKDDEAVAAGDHPVRRGVLRDIDEMEKLMDNLFNFELAAYAGAHTPVLMVEPPLNERSQRQEMAAMMFETFKV 142
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A395IVZ5_9HELO (Uncharacterized protein n=1 Tax=Monilinia fructigena TaxID=38457 RepID=A0A395IVZ5_9HELO) HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8 Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 3
Query: 63 MAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLS-----LATEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
MA +++ +V+D GS +++AGF+GEDLP+ + S +D+ + E L T P VL+ EPPLN R+ R A ++FETF V
Sbjct: 1 MADTLHNAPIVLDNGSGTIRAGFAGEDLPKITWHSYRLDDMERIWEYVYGEGLKTLSEEHP-VLLTEPPLNPRSNRDTAAQILFETFNV 88
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A7S2D3H2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3H2_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 4.100e-8 Identity = 43/122 (35.25%), Postives = 59/122 (48.36%), Query Frame = 3
Query: 75 VNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVV------------------AEDLS-------LATE--------------ELSTY----RARRPEVLMVEPPLNERAQRQEIAAMMFETFK 311
++E +V+D GS S K G+SGED PR++FPSVV AED S + T+ EL TY VL+ EPPLN++ R+++A +MFETFK
Sbjct: 1 MDEGVIVIDAGSGSTKIGYSGEDTPRSIFPSVVDHPVLNEGTSRRPDVMDGAEDSSVHPVKRGMVTDWDQMERLWDHTFGTELRTYPETGSVNGVPVLLTEPPLNDKKSREQMARLMFETFK 122
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: F0ZR57_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZR57_DICPU) HSP 1 Score: 56.2 bits (134), Expect = 5.860e-7 Identity = 43/137 (31.39%), Postives = 58/137 (42.34%), Query Frame = 3
Query: 45 KVFRRTMAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLA-----------------------------------------------TEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
K R +S+ E T+VVD GS VKAGF+GED PR++FPS+V L + T EL ++ P VL+ EPPLN +A R+ + MFE F+V
Sbjct: 535 KSARIEFLSSIKEKTLVVDNGSGMVKAGFAGEDAPRSIFPSIVGYPLFNSVMHGMGKDKYIGEEAQAKRGVLSIKYPVEHGVITNWNDMESLWEYTFTTELRVDPSKHP-VLLTEPPLNPKANRERMVETMFEVFQV 670
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: UPI001446F697 (Actin-like protein n=1 Tax=Daldinia childiae TaxID=326645 RepID=UPI001446F697) HSP 1 Score: 55.8 bits (133), Expect = 7.100e-7 Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 3
Query: 63 MAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLA-------------------------------TEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
M S++ +V+D GS +++AGF+G+DLP+ FPS V L +E L T P VL+ EPPLN RA R A ++FETF V
Sbjct: 1 MTDSLHNAPIVLDNGSGTIRAGFAGDDLPKCYFPSFVGRPKHLRVLAGALEGEIPFRTWHSHRLGRYGEIWEYVYSEGLKTISEEHP-VLLTEPPLNPRANRDTAAQILFETFNV 114
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A6A2YM90_HIBSY (Actin n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YM90_HIBSY) HSP 1 Score: 54.3 bits (129), Expect = 1.790e-6 Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 3
Query: 90 VVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLAT------------EELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETF 308
+V D G+ VKAGFSG+D PR VFPS+V +E + P VL+ E PLN +A R+++ +MFETF
Sbjct: 10 LVCDNGTGMVKAGFSGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKLEEHP-VLLTEAPLNPKANREKMTQIMFETF 93
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: F0Y9N8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9N8_AURAN) HSP 1 Score: 54.7 bits (130), Expect = 1.870e-6 Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 3
Query: 90 VVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEELSTYRARRPE 233
+V+D GS+SVKAG+SGED PR+VFPS++ E + A L+ RRPE
Sbjct: 7 IVIDAGSASVKAGYSGEDTPRSVFPSILDEGGAEALSGLARSGGRRPE 54
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A438FEN1_VITVI (Actin n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEN1_VITVI) HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6 Identity = 39/99 (39.39%), Postives = 51/99 (51.52%), Query Frame = 3
Query: 90 VVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEEL-------------------STYRARR--PE---VLMVEPPLNERAQRQEIAAMMFETFKV 314
+V D G+ VKAGF+G+D PR VFPS+VA DL L + Y R PE VL+ E PLN +A R+++ +MFETF V
Sbjct: 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVA-DLDTQVSWLGWAKRMLINWDDMEKIWHHTFYNGLRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 107
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A068VJM6_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068VJM6_COFCA) HSP 1 Score: 52.8 bits (125), Expect = 6.250e-6 Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 3
Query: 84 ITVVVDVGSSSVKAGFSGEDLPRTVFPSVV---------AEDLSLA---TEELSTYRARRPEVLMVEPPLNERAQRQEIAAMMFETFKV 314
I +V+ G+ S KAGF+G+D P FP +V AE + L +++ R VL+ EPPLN +A RQ++ +MFETF V
Sbjct: 9 IPIVIYNGTRSTKAGFAGDDFPLASFPHLVGRTRHIIPLAEGVFLKYFLPQKMLHVDPRDHPVLLTEPPLNPKANRQKLTEIMFETFNV 97
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Match: A0A8H6H798_9AGAR (Actin family n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6H798_9AGAR) HSP 1 Score: 52.8 bits (125), Expect = 8.670e-6 Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 3
Query: 90 VVVDVGSSSVKAGFSGEDLPRTVFPS-----------------VVA--EDLSLATEELSTYRARRPE---VLMVEPPLNERAQRQEIAAMMFETFKV 314
VV++ GSS KAGF+GED PRTVFP+ +V ED+ + + PE VL+ E PLN +A+R++ A +MFET+ +
Sbjct: 9 VVIENGSSQCKAGFAGEDGPRTVFPAKGFAYGALAFSHPVENGIVKNWEDMERVWDHVFREIRASPEEHPVLLTESPLNPKAEREKAAQVMFETYNI 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196853.5488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig196853.5488.1 >prot_H-elongata_contig196853.5488.1 ID=prot_H-elongata_contig196853.5488.1|Name=mRNA_H-elongata_contig196853.5488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp MAASVNEITVVVDVGSSSVKAGFSGEDLPRTVFPSVVAEDLSLATEELSTback to top mRNA from alignment at H-elongata_contig196853:52..973- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig196853.5488.1 ID=mRNA_H-elongata_contig196853.5488.1|Name=mRNA_H-elongata_contig196853.5488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=922bp|location=Sequence derived from alignment at H-elongata_contig196853:52..973- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig196853:52..973- >mRNA_H-elongata_contig196853.5488.1 ID=mRNA_H-elongata_contig196853.5488.1|Name=mRNA_H-elongata_contig196853.5488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig196853:52..973- (Himanthalia elongata Himel1 dioecious)back to top |