mRNA_H-elongata_contig175635.4581.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A7S4DC20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC20_HETAK) HSP 1 Score: 73.9 bits (180), Expect = 9.140e-14 Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIV 192
+GSPMPG VEKV VA G V EG+ +AVVSAMKMEV+VKA GK++ + E G KV++GAL++
Sbjct: 598 IGSPMPGAVEKVCVAAGDDVVEGQTIAVVSAMKMEVEVKAPGRGKIKRIVTETGSKVIDGALMI 661
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A7S3Y4I5_HETAK (Acetyl-CoA carboxytransferase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y4I5_HETAK) HSP 1 Score: 65.9 bits (159), Expect = 6.520e-11 Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIV 192
+GSPMPG VEK++VA G V G+ +AVV AMKMEV VKA GK++ + +G KV+EGAL++
Sbjct: 1266 IGSPMPGQVEKMVVAKGDEVKAGDTLAVVGAMKMEVTVKAPHDGKIKKIVTGKGAKVIEGALMI 1329
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A2A4IPJ0_9SPIR (Acetyl-CoA carboxylase n=5 Tax=Brachyspira TaxID=29521 RepID=A0A2A4IPJ0_9SPIR) HSP 1 Score: 57.8 bits (138), Expect = 6.210e-9 Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
V + MPG + VAVG V+EG+VVA++ AMKME ++ A ++G+V+S+ VE+G VVEG +I+ +K
Sbjct: 66 VKATMPGTIVSFSVAVGDKVTEGQVVAILEAMKMENELTAPASGEVKSIHVEKGSSVVEGQVILQIK 132
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A4U7NDG9_9SPIR (Biotin/lipoyl-binding protein n=1 Tax=Brachyspira catarrhinii TaxID=2528966 RepID=A0A4U7NDG9_9SPIR) HSP 1 Score: 57.8 bits (138), Expect = 6.590e-9 Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTL 198
V +PMPG + V+VG VSEG+VVA++ AMKME ++ A ++GKV+S+ VE+G V+E +I+ +
Sbjct: 69 VKAPMPGTILSFTVSVGDEVSEGQVVAILEAMKMENELTAPASGKVKSIHVEKGSSVIENQVILQI 134
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: D8LM14_ECTSI (Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM14_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 9.670e-9 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEV 108
VGSPMPGVVEKVLV VG+SVSEGEVVAVVSAMKMEV
Sbjct: 1168 VGSPMPGVVEKVLVEVGSSVSEGEVVAVVSAMKMEV 1203
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: R5H6H2_9SPIR (Biotin/lipoyl attachment domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=R5H6H2_9SPIR) HSP 1 Score: 58.5 bits (140), Expect = 2.430e-8 Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTL 198
V + +PG V KVLV+ G ++SEG+V+AV+ AMKME ++K+ +G V+S+ +E G KVV G ++VT+
Sbjct: 529 VKAALPGNVLKVLVSNGDNISEGDVIAVIEAMKMETEIKSPVSGTVKSVDIEVGDKVVTGQVLVTV 594
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A6H5JPG9_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG9_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 3.400e-8 Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKM 102
VGSPMPGVVEKVLV VG+SVSEGEVVAVVSAMKM
Sbjct: 103 VGSPMPGVVEKVLVEVGSSVSEGEVVAVVSAMKM 136
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: UPI000A76CACA (biotin/lipoyl-binding protein n=1 Tax=Rhodococcus sp. EPR-157 TaxID=1813677 RepID=UPI000A76CACA) HSP 1 Score: 55.1 bits (131), Expect = 4.500e-8 Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
V +PM G V KV V G V+EG+++AV+ AMKME V A AGKV LAV+ G + +G ++ LK
Sbjct: 45 VTAPMQGTVVKVAVEEGQDVAEGDLIAVLEAMKMENPVNAHKAGKVTGLAVQPGSAITQGTVLAELK 111
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A1H1S299_9CORY (Biotin carboxylase n=1 Tax=Corynebacterium timonense TaxID=441500 RepID=A0A1H1S299_9CORY) HSP 1 Score: 57.8 bits (138), Expect = 4.530e-8 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
V +PM G V KV V+ G VSEG+V+ V+ AMKME VKA AG V LA E GG+V +GA+++ LK
Sbjct: 520 VAAPMQGTVIKVNVSEGDEVSEGDVLLVLEAMKMENPVKAHKAGTVTGLAAETGGQVNKGAVLMELK 586
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A7H0SMF8_9CORY (Biotin carboxylase n=2 Tax=unclassified Corynebacterium TaxID=2624378 RepID=A0A7H0SMF8_9CORY) HSP 1 Score: 57.8 bits (138), Expect = 4.530e-8 Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
V +PM G V KV VA G +VSEG+ V V+ AMKME VKA +G ++SL+VE GG V +GA+++ ++
Sbjct: 523 VTAPMQGTVIKVNVAEGDTVSEGDTVVVLEAMKMENPVKAHKSGTIKSLSVEAGGTVTKGAVLLEIE 589 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig175635.4581.1 >prot_H-elongata_contig175635.4581.1 ID=prot_H-elongata_contig175635.4581.1|Name=mRNA_H-elongata_contig175635.4581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp MPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGback to top mRNA from alignment at H-elongata_contig175635:624..833- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig175635.4581.1 ID=mRNA_H-elongata_contig175635.4581.1|Name=mRNA_H-elongata_contig175635.4581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig175635:624..833- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig175635:624..833- >mRNA_H-elongata_contig175635.4581.1 ID=mRNA_H-elongata_contig175635.4581.1|Name=mRNA_H-elongata_contig175635.4581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig175635:624..833- (Himanthalia elongata Himel1 dioecious)back to top |