mRNA_H-elongata_contig175635.4581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig175635.4581.1
Unique NamemRNA_H-elongata_contig175635.4581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A7S4DC20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC20_HETAK)

HSP 1 Score: 73.9 bits (180), Expect = 9.140e-14
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIV 192
            +GSPMPG VEKV VA G  V EG+ +AVVSAMKMEV+VKA   GK++ +  E G KV++GAL++
Sbjct:  598 IGSPMPGAVEKVCVAAGDDVVEGQTIAVVSAMKMEVEVKAPGRGKIKRIVTETGSKVIDGALMI 661          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A7S3Y4I5_HETAK (Acetyl-CoA carboxytransferase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3Y4I5_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 6.520e-11
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIV 192
            +GSPMPG VEK++VA G  V  G+ +AVV AMKMEV VKA   GK++ +   +G KV+EGAL++
Sbjct: 1266 IGSPMPGQVEKMVVAKGDEVKAGDTLAVVGAMKMEVTVKAPHDGKIKKIVTGKGAKVIEGALMI 1329          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A2A4IPJ0_9SPIR (Acetyl-CoA carboxylase n=5 Tax=Brachyspira TaxID=29521 RepID=A0A2A4IPJ0_9SPIR)

HSP 1 Score: 57.8 bits (138), Expect = 6.210e-9
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
            V + MPG +    VAVG  V+EG+VVA++ AMKME ++ A ++G+V+S+ VE+G  VVEG +I+ +K
Sbjct:   66 VKATMPGTIVSFSVAVGDKVTEGQVVAILEAMKMENELTAPASGEVKSIHVEKGSSVVEGQVILQIK 132          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A4U7NDG9_9SPIR (Biotin/lipoyl-binding protein n=1 Tax=Brachyspira catarrhinii TaxID=2528966 RepID=A0A4U7NDG9_9SPIR)

HSP 1 Score: 57.8 bits (138), Expect = 6.590e-9
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTL 198
            V +PMPG +    V+VG  VSEG+VVA++ AMKME ++ A ++GKV+S+ VE+G  V+E  +I+ +
Sbjct:   69 VKAPMPGTILSFTVSVGDEVSEGQVVAILEAMKMENELTAPASGKVKSIHVEKGSSVIENQVILQI 134          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: D8LM14_ECTSI (Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM14_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 9.670e-9
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEV 108
            VGSPMPGVVEKVLV VG+SVSEGEVVAVVSAMKMEV
Sbjct: 1168 VGSPMPGVVEKVLVEVGSSVSEGEVVAVVSAMKMEV 1203          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: R5H6H2_9SPIR (Biotin/lipoyl attachment domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=R5H6H2_9SPIR)

HSP 1 Score: 58.5 bits (140), Expect = 2.430e-8
Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTL 198
            V + +PG V KVLV+ G ++SEG+V+AV+ AMKME ++K+  +G V+S+ +E G KVV G ++VT+
Sbjct:  529 VKAALPGNVLKVLVSNGDNISEGDVIAVIEAMKMETEIKSPVSGTVKSVDIEVGDKVVTGQVLVTV 594          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A6H5JPG9_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.400e-8
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKM 102
            VGSPMPGVVEKVLV VG+SVSEGEVVAVVSAMKM
Sbjct:  103 VGSPMPGVVEKVLVEVGSSVSEGEVVAVVSAMKM 136          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: UPI000A76CACA (biotin/lipoyl-binding protein n=1 Tax=Rhodococcus sp. EPR-157 TaxID=1813677 RepID=UPI000A76CACA)

HSP 1 Score: 55.1 bits (131), Expect = 4.500e-8
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
            V +PM G V KV V  G  V+EG+++AV+ AMKME  V A  AGKV  LAV+ G  + +G ++  LK
Sbjct:   45 VTAPMQGTVVKVAVEEGQDVAEGDLIAVLEAMKMENPVNAHKAGKVTGLAVQPGSAITQGTVLAELK 111          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A1H1S299_9CORY (Biotin carboxylase n=1 Tax=Corynebacterium timonense TaxID=441500 RepID=A0A1H1S299_9CORY)

HSP 1 Score: 57.8 bits (138), Expect = 4.530e-8
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
            V +PM G V KV V+ G  VSEG+V+ V+ AMKME  VKA  AG V  LA E GG+V +GA+++ LK
Sbjct:  520 VAAPMQGTVIKVNVSEGDEVSEGDVLLVLEAMKMENPVKAHKAGTVTGLAAETGGQVNKGAVLMELK 586          
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Match: A0A7H0SMF8_9CORY (Biotin carboxylase n=2 Tax=unclassified Corynebacterium TaxID=2624378 RepID=A0A7H0SMF8_9CORY)

HSP 1 Score: 57.8 bits (138), Expect = 4.530e-8
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 VGSPMPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEGGKVVEGALIVTLK 201
            V +PM G V KV VA G +VSEG+ V V+ AMKME  VKA  +G ++SL+VE GG V +GA+++ ++
Sbjct:  523 VTAPMQGTVIKVNVAEGDTVSEGDTVVVLEAMKMENPVKAHKSGTIKSLSVEAGGTVTKGAVLLEIE 589          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175635.4581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DC20_HETAK9.140e-1459.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y4I5_HETAK6.520e-1154.69Acetyl-CoA carboxytransferase n=2 Tax=Sar TaxID=26... [more]
A0A2A4IPJ0_9SPIR6.210e-947.76Acetyl-CoA carboxylase n=5 Tax=Brachyspira TaxID=2... [more]
A0A4U7NDG9_9SPIR6.590e-946.97Biotin/lipoyl-binding protein n=1 Tax=Brachyspira ... [more]
D8LM14_ECTSI9.670e-994.44Acetyl-CoA carboxytransferase n=1 Tax=Ectocarpus s... [more]
R5H6H2_9SPIR2.430e-848.48Biotin/lipoyl attachment domain-containing protein... [more]
A0A6H5JPG9_9PHAE3.400e-894.12Lipoyl-binding domain-containing protein n=1 Tax=E... [more]
UPI000A76CACA4.500e-847.76biotin/lipoyl-binding protein n=1 Tax=Rhodococcus ... [more]
A0A1H1S299_9CORY4.530e-853.73Biotin carboxylase n=1 Tax=Corynebacterium timonen... [more]
A0A7H0SMF8_9CORY4.530e-850.75Biotin carboxylase n=2 Tax=unclassified Corynebact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig175635contigH-elongata_contig175635:624..833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.3554835-CDS-H-elongata_contig175635:623..8211622930018.3554835-CDS-H-elongata_contig175635:623..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175635 624..821 -
1691679248.0678518-CDS-H-elongata_contig175635:623..8211691679248.0678518-CDS-H-elongata_contig175635:623..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig175635 624..821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930018.3719532-UTR-H-elongata_contig175635:821..8331622930018.3719532-UTR-H-elongata_contig175635:821..833Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175635 822..833 -
1691679248.0813057-UTR-H-elongata_contig175635:821..8331691679248.0813057-UTR-H-elongata_contig175635:821..833Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig175635 822..833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig175635.4581.1prot_H-elongata_contig175635.4581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig175635 624..821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig175635.4581.1

>prot_H-elongata_contig175635.4581.1 ID=prot_H-elongata_contig175635.4581.1|Name=mRNA_H-elongata_contig175635.4581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MPGVVEKVLVAVGASVSEGEVVAVVSAMKMEVQVKATSAGKVESLAVEEG
GKVVEGALIVTLKGC*
back to top

mRNA from alignment at H-elongata_contig175635:624..833-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig175635.4581.1 ID=mRNA_H-elongata_contig175635.4581.1|Name=mRNA_H-elongata_contig175635.4581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig175635:624..833- (Himanthalia elongata Himel1 dioecious)
GTGGGATCCCCCATGCCCGGGGTGGTGGAGAAGGTGTTGGTCGCGGTGGG GGCCTCCGTTTCGGAGGGGGAGGTAGTGGCGGTTGTTTCAGCCATGAAGA TGGAGGTACAGGTCAAGGCAACATCGGCGGGAAAAGTGGAGTCCTTAGCG GTAGAGGAGGGTGGAAAGGTTGTAGAAGGGGCACTCATAGTGACACTCAA GGGATGCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig175635:624..833-

>mRNA_H-elongata_contig175635.4581.1 ID=mRNA_H-elongata_contig175635.4581.1|Name=mRNA_H-elongata_contig175635.4581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig175635:624..833- (Himanthalia elongata Himel1 dioecious)
ATGCCCGGGGTGGTGGAGAAGGTGTTGGTCGCGGTGGGGGCCTCCGTTTC
GGAGGGGGAGGTAGTGGCGGTTGTTTCAGCCATGAAGATGGAGGTACAGG
TCAAGGCAACATCGGCGGGAAAAGTGGAGTCCTTAGCGGTAGAGGAGGGT
GGAAAGGTTGTAGAAGGGGCACTCATAGTGACACTCAAGGGATGCTAGAT
GCCCGGGGTGGTGGAGAAGGTGTTGGTCGCGGTGGGGGCCTCCGTTTCGG
AGGGGGAGGTAGTGGCGGTTGTTTCAGCCATGAAGATGGAGGTACAGGTC
AAGGCAACATCGGCGGGAAAAGTGGAGTCCTTAGCGGTAGAGGAGGGTGG
AAAGGTTGTAGAAGGGGCACTCATAGTGACACTCAAGGGATGCTAG
back to top