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Homology
BLAST of mRNA_H-elongata_contig14660.3166.1 vs. uniprot
Match: D8LTK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK6_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 4.360e-20 Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 2
Query: 131 AKEHGEGFVNTLGDVLARHGWTIVFVLVVYYNVKDRIRRRWRIWQNERSIADANRSSRRAVLDRERAKVVADKQAE 358
AKE + V+ + D+LARHGWT VF+++V+YN KD ++R +R W+N+RS+ DANR+ RRAVLDRERA+ VA+KQA+
Sbjct: 39 AKEASDRLVSFVADILARHGWTAVFLVIVWYNCKDAVKRHYRKWRNKRSLDDANRADRRAVLDRERARSVAEKQAQ 114
BLAST of mRNA_H-elongata_contig14660.3166.1 vs. uniprot
Match: A0A6H5KQI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI4_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.180e-18 Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 2
Query: 101 GEDFMAKLTGAKEHGEGFVNTLGDVLARHGWTIVFVLVVYYNVKDRIRRRWRIWQNERSIADANRSSRRAVLDRERAKVVADKQAE 358
G ++ + KE + V+ + DVLAR+GWT +F+++V+YN KD ++RR+ W+N+RS+ DANR RRAVLDRERA+ VA+KQA+
Sbjct: 29 GGGWVEGVDSVKEASDRLVSFVADVLARYGWTAIFLVIVWYNCKDAVKRRYWKWRNKRSLDDANRPDRRAVLDRERARSVAEKQAQ 114
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Selenoprotein S |
| Ec32 ortholog | Ec-28_003730.1 |
| Exons | 2 |
| Model size | 1004 |
| Cds size | 315 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929870.9731143-UTR-H-elongata_contig14660:940..1538 | 1622929870.9731143-UTR-H-elongata_contig14660:940..1538 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14660 941..1538 - |
| 1691679189.6755266-UTR-H-elongata_contig14660:940..1538 | 1691679189.6755266-UTR-H-elongata_contig14660:940..1538 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14660 941..1538 - |
| 1622929871.0184782-UTR-H-elongata_contig14660:2844..2935 | 1622929871.0184782-UTR-H-elongata_contig14660:2844..2935 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14660 2845..2935 - |
| 1691679189.7022371-UTR-H-elongata_contig14660:2844..2935 | 1691679189.7022371-UTR-H-elongata_contig14660:2844..2935 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14660 2845..2935 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929870.9887877-CDS-H-elongata_contig14660:1538..1677 | 1622929870.9887877-CDS-H-elongata_contig14660:1538..1677 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14660 1539..1677 - |
| 1691679189.6832814-CDS-H-elongata_contig14660:1538..1677 | 1691679189.6832814-CDS-H-elongata_contig14660:1538..1677 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14660 1539..1677 - |
| 1622929871.0041673-CDS-H-elongata_contig14660:2668..2844 | 1622929871.0041673-CDS-H-elongata_contig14660:2668..2844 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14660 2669..2844 - |
| 1691679189.6910846-CDS-H-elongata_contig14660:2668..2844 | 1691679189.6910846-CDS-H-elongata_contig14660:2668..2844 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14660 2669..2844 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14660.3166.1 >prot_H-elongata_contig14660.3166.1 ID=prot_H-elongata_contig14660.3166.1|Name=mRNA_H-elongata_contig14660.3166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MAWGEDFMAKLTGAKEHGEGFVNTLGDVLARHGWTIVFVLVVYYNVKDRI
RRRWRIWQNERSIADANRSSRRAVLDRERAKVVADKQAEVQAALGTKANN
KKKS* back to topmRNA from alignment at H-elongata_contig14660:941..2935- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig14660.3166.1 ID=mRNA_H-elongata_contig14660.3166.1|Name=mRNA_H-elongata_contig14660.3166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1995bp|location=Sequence derived from alignment at H-elongata_contig14660:941..2935- (Himanthalia elongata Himel1 dioecious)
CAGAGCTGCACAAGTATCTTCAAGACGTTTGAGGAAAACTGAAACCACAA
GCCATACTACTGGTGGGAGGCACGGGAGGCTGAGCGAAGCGATGGCTTGG
GGGGAAGACTTCATGGCGAAGCTCACCGGCGCGAAGGAGCATGGCGAAGG
ATTCGTAAACACGCTGGGAGACGTGCTGGCGCGACACGGTTGGACCATCG
TCTTCGTCCTTGTGGTGTACTATAACGTCAAAGATCGCATACGTCGGAGG
TGGCGGATCTGGCAAAAGTGAGTTTAGTGACTGATTCTGCTTCTTGTGTA
ACTGCTTGTAAGGAATCTACGCGAGCAGCTTACGGTTTATTTCGCTACCG
AAGAACGATACCGAAGTAATTACTTGGTACGGTTTTGGTACAAATTCAGG
CCCGTGTTTTCCGAGCGCATTTCTTCATCCCCTTCATCTCTGTCTTGTCG
TATCCTATTCTATACGACCATGCTATATCGTTTATCGCCCCCTGTCCTGT
ATTGTCTTGCCAAGATCGCCCTTTTACAAACCGCGCATGAACTCAAAGAG
AGAGTTGATGGGGAAAAGCTCTGAACTCTTTGAATGGTTACTTATTCGGT
CTACCTTGGGCCACTGAAACAAACTACCGCCTACCGCTGAAGATGACCCA
CTGTACAAGGTAGTCCCCAATGCTTCAATATATAGTATTTGATATTTAAC
GCCCCCCCCGAACGGAAATCCCTTACCTACATAGCGGCAAGTGACATTAA
TATTGATTAAGCTATGTAAACAATATGCCGGTACAAGTTGTCACATAGAG
CACCGCGATTGGTTTCAAACGACCTCGTGGAGGTTTTCCCCTAAAGTCCC
TGACGTTTCCGCACCCATCCTGCTGCAGGAGACTTTGACAGGGAATGTCG
GCCCCTGTATTACCTATGTCTAGTCACCCATGCTTCAACTGTCTGATATT
AGATCTAGCCGTCCTGTACAAGTGCCAGGAATAATCTGATGTTCCTATTT
CCAAGAATGCGGCACTTACGAAGCTTTGATTGATTCAGTAATTGAGCTAA
CACATGCCAGATTAAGTTTTTTTCGTGATACTACCCCCAACCCCAAATTA
AACGCTTGGTACAATGGCACGCTCTTGTGCACCAATTCCGTAACTTAGCC
ATTAGTTACCCCCAGAACGGGAAACGAATGGTCACTGACTACATCTTCTC
GTCCCGCATCCCACGCGACACGTTCGTTTACTGTTTTCCGATTGTTTAAC
AAGCGTAGCGAGCGGTCGATCGCTGATGCAAACAGATCATCACGCAGGGC
TGTGCTCGATCGCGAACGGGCTAAGGTTGTGGCAGACAAGCAGGCGGAGG
TACAGGCTGCACTTGGCACCAAGGCGAATAACAAAAAGAAGAGTTAGCTC
TAGACTAGACTCCGAAGGCGTCAACACACTGTATTTTAAGTCCTTCGTGG
AGTAAATCTGGAATGGTTCCTCCTCTTGGAAGGATCGCATGAGTGACTGA
CGAGAGAGGGTAGTTCTAGTGTGAGTGCTTCAGCATTACTCGGCGAAGGT
TATGGATAACAAGCAATCTCACAGTTTGGCGTTCACATAGGGCAGTAGTC
AAGGACGTCACAATAGGCCGAGATATTTGAACAGGTGACTCGATTGCATG
TTCAACCGTGGCAACGCAAGAGACCTCATTGCGGTATCGCTAGTCTTGCG
CCCCATATGCAGTGCAGTGCAGTGCAGGTAATGTACTGAAAAATCTCCAG
CTTTTCGTGCATCGGGTAAATTATTTTGAAGACTGACTTGTATAATAAAT
GTTCAGAGATGACGCCCCCTCATGGAGATATTTGCCGTCCGCTCTTTTCT
CTTTTGCAGCAACGAAGCGAGTCAAACTAATACTATCGACAGTATCAAAG
ATAATTTGTACGGCCGTGCTGTAAATAATAAGGAGTAATGCACCACCCCT
TTATGTACCGCCAAATCTTACAGTCAAACATCAACCCTTCCTGCC back to topCoding sequence (CDS) from alignment at H-elongata_contig14660:941..2935- >mRNA_H-elongata_contig14660.3166.1 ID=mRNA_H-elongata_contig14660.3166.1|Name=mRNA_H-elongata_contig14660.3166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig14660:941..2935- (Himanthalia elongata Himel1 dioecious)
ATGGCTTGGGGGGAAGACTTCATGGCGAAGCTCACCGGCGCGAAGGAGCA
TGGCGAAGGATTCGTAAACACGCTGGGAGACGTGCTGGCGCGACACGGTT
GGACCATCGTCTTCGTCCTTGTGGTGTACTATAACGTCAAAGATCGCATA
CGTCGGAGGTGGCGGATCTGGCAAAAATGGCTTGGGGGGAAGACTTCATG
GCGAAGCTCACCGGCGCGAAGGAGCATGGCGAAGGATTCGTAAACACGCT
GGGAGACGTGCTGGCGCGACACGGTTGGACCATCGTCTTCGTCCTTGTGG
TGTACTATAACGTCAAAGATCGCATACGTCGGAGGTGGCGGATCTGGCAA
AACGAGCGGTCGATCGCTGATGCAAACAGATCATCACGCAGGGCTGTGCT
CGATCGCGAACGGGCTAAGGTTGTGGCAGACAAGCAGGCGGAGGTACAGG
CTGCACTTGGCACCAAGGCGAATAACAAAAAGAAGAGTTAGCGAGCGGTC
GATCGCTGATGCAAACAGATCATCACGCAGGGCTGTGCTCGATCGCGAAC
GGGCTAAGGTTGTGGCAGACAAGCAGGCGGAGGTACAGGCTGCACTTGGC
ACCAAGGCGAATAACAAAAAGAAGAGTTAG back to top
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