mRNA_H-elongata_contig14660.3166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14660.3166.1
Unique NamemRNA_H-elongata_contig14660.3166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14660.3166.1 vs. uniprot
Match: D8LTK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK6_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.360e-20
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 2 
Query:  131 AKEHGEGFVNTLGDVLARHGWTIVFVLVVYYNVKDRIRRRWRIWQNERSIADANRSSRRAVLDRERAKVVADKQAE 358
            AKE  +  V+ + D+LARHGWT VF+++V+YN KD ++R +R W+N+RS+ DANR+ RRAVLDRERA+ VA+KQA+
Sbjct:   39 AKEASDRLVSFVADILARHGWTAVFLVIVWYNCKDAVKRHYRKWRNKRSLDDANRADRRAVLDRERARSVAEKQAQ 114
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BLAST of mRNA_H-elongata_contig14660.3166.1 vs. uniprot
Match: A0A6H5KQI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.180e-18
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 2 
Query:  101 GEDFMAKLTGAKEHGEGFVNTLGDVLARHGWTIVFVLVVYYNVKDRIRRRWRIWQNERSIADANRSSRRAVLDRERAKVVADKQAE 358
            G  ++  +   KE  +  V+ + DVLAR+GWT +F+++V+YN KD ++RR+  W+N+RS+ DANR  RRAVLDRERA+ VA+KQA+
Sbjct:   29 GGGWVEGVDSVKEASDRLVSFVADVLARYGWTAIFLVIVWYNCKDAVKRRYWKWRNKRSLDDANRPDRRAVLDRERARSVAEKQAQ 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14660.3166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTK6_ECTSI4.360e-2057.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQI4_9PHAE3.180e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14660contigH-elongata_contig14660:941..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSelenoprotein S
Ec32 orthologEc-28_003730.1
Exons2
Model size1004
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14660.3166.1prot_H-elongata_contig14660.3166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14660 1539..2844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.9731143-UTR-H-elongata_contig14660:940..15381622929870.9731143-UTR-H-elongata_contig14660:940..1538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14660 941..1538 -
1691679189.6755266-UTR-H-elongata_contig14660:940..15381691679189.6755266-UTR-H-elongata_contig14660:940..1538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14660 941..1538 -
1622929871.0184782-UTR-H-elongata_contig14660:2844..29351622929871.0184782-UTR-H-elongata_contig14660:2844..2935Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14660 2845..2935 -
1691679189.7022371-UTR-H-elongata_contig14660:2844..29351691679189.7022371-UTR-H-elongata_contig14660:2844..2935Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14660 2845..2935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.9887877-CDS-H-elongata_contig14660:1538..16771622929870.9887877-CDS-H-elongata_contig14660:1538..1677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14660 1539..1677 -
1691679189.6832814-CDS-H-elongata_contig14660:1538..16771691679189.6832814-CDS-H-elongata_contig14660:1538..1677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14660 1539..1677 -
1622929871.0041673-CDS-H-elongata_contig14660:2668..28441622929871.0041673-CDS-H-elongata_contig14660:2668..2844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14660 2669..2844 -
1691679189.6910846-CDS-H-elongata_contig14660:2668..28441691679189.6910846-CDS-H-elongata_contig14660:2668..2844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14660 2669..2844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14660.3166.1

>prot_H-elongata_contig14660.3166.1 ID=prot_H-elongata_contig14660.3166.1|Name=mRNA_H-elongata_contig14660.3166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MAWGEDFMAKLTGAKEHGEGFVNTLGDVLARHGWTIVFVLVVYYNVKDRI
RRRWRIWQNERSIADANRSSRRAVLDRERAKVVADKQAEVQAALGTKANN
KKKS*
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mRNA from alignment at H-elongata_contig14660:941..2935-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14660.3166.1 ID=mRNA_H-elongata_contig14660.3166.1|Name=mRNA_H-elongata_contig14660.3166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1995bp|location=Sequence derived from alignment at H-elongata_contig14660:941..2935- (Himanthalia elongata Himel1 dioecious)
CAGAGCTGCACAAGTATCTTCAAGACGTTTGAGGAAAACTGAAACCACAA
GCCATACTACTGGTGGGAGGCACGGGAGGCTGAGCGAAGCGATGGCTTGG
GGGGAAGACTTCATGGCGAAGCTCACCGGCGCGAAGGAGCATGGCGAAGG
ATTCGTAAACACGCTGGGAGACGTGCTGGCGCGACACGGTTGGACCATCG
TCTTCGTCCTTGTGGTGTACTATAACGTCAAAGATCGCATACGTCGGAGG
TGGCGGATCTGGCAAAAGTGAGTTTAGTGACTGATTCTGCTTCTTGTGTA
ACTGCTTGTAAGGAATCTACGCGAGCAGCTTACGGTTTATTTCGCTACCG
AAGAACGATACCGAAGTAATTACTTGGTACGGTTTTGGTACAAATTCAGG
CCCGTGTTTTCCGAGCGCATTTCTTCATCCCCTTCATCTCTGTCTTGTCG
TATCCTATTCTATACGACCATGCTATATCGTTTATCGCCCCCTGTCCTGT
ATTGTCTTGCCAAGATCGCCCTTTTACAAACCGCGCATGAACTCAAAGAG
AGAGTTGATGGGGAAAAGCTCTGAACTCTTTGAATGGTTACTTATTCGGT
CTACCTTGGGCCACTGAAACAAACTACCGCCTACCGCTGAAGATGACCCA
CTGTACAAGGTAGTCCCCAATGCTTCAATATATAGTATTTGATATTTAAC
GCCCCCCCCGAACGGAAATCCCTTACCTACATAGCGGCAAGTGACATTAA
TATTGATTAAGCTATGTAAACAATATGCCGGTACAAGTTGTCACATAGAG
CACCGCGATTGGTTTCAAACGACCTCGTGGAGGTTTTCCCCTAAAGTCCC
TGACGTTTCCGCACCCATCCTGCTGCAGGAGACTTTGACAGGGAATGTCG
GCCCCTGTATTACCTATGTCTAGTCACCCATGCTTCAACTGTCTGATATT
AGATCTAGCCGTCCTGTACAAGTGCCAGGAATAATCTGATGTTCCTATTT
CCAAGAATGCGGCACTTACGAAGCTTTGATTGATTCAGTAATTGAGCTAA
CACATGCCAGATTAAGTTTTTTTCGTGATACTACCCCCAACCCCAAATTA
AACGCTTGGTACAATGGCACGCTCTTGTGCACCAATTCCGTAACTTAGCC
ATTAGTTACCCCCAGAACGGGAAACGAATGGTCACTGACTACATCTTCTC
GTCCCGCATCCCACGCGACACGTTCGTTTACTGTTTTCCGATTGTTTAAC
AAGCGTAGCGAGCGGTCGATCGCTGATGCAAACAGATCATCACGCAGGGC
TGTGCTCGATCGCGAACGGGCTAAGGTTGTGGCAGACAAGCAGGCGGAGG
TACAGGCTGCACTTGGCACCAAGGCGAATAACAAAAAGAAGAGTTAGCTC
TAGACTAGACTCCGAAGGCGTCAACACACTGTATTTTAAGTCCTTCGTGG
AGTAAATCTGGAATGGTTCCTCCTCTTGGAAGGATCGCATGAGTGACTGA
CGAGAGAGGGTAGTTCTAGTGTGAGTGCTTCAGCATTACTCGGCGAAGGT
TATGGATAACAAGCAATCTCACAGTTTGGCGTTCACATAGGGCAGTAGTC
AAGGACGTCACAATAGGCCGAGATATTTGAACAGGTGACTCGATTGCATG
TTCAACCGTGGCAACGCAAGAGACCTCATTGCGGTATCGCTAGTCTTGCG
CCCCATATGCAGTGCAGTGCAGTGCAGGTAATGTACTGAAAAATCTCCAG
CTTTTCGTGCATCGGGTAAATTATTTTGAAGACTGACTTGTATAATAAAT
GTTCAGAGATGACGCCCCCTCATGGAGATATTTGCCGTCCGCTCTTTTCT
CTTTTGCAGCAACGAAGCGAGTCAAACTAATACTATCGACAGTATCAAAG
ATAATTTGTACGGCCGTGCTGTAAATAATAAGGAGTAATGCACCACCCCT
TTATGTACCGCCAAATCTTACAGTCAAACATCAACCCTTCCTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig14660:941..2935-

>mRNA_H-elongata_contig14660.3166.1 ID=mRNA_H-elongata_contig14660.3166.1|Name=mRNA_H-elongata_contig14660.3166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig14660:941..2935- (Himanthalia elongata Himel1 dioecious)
ATGGCTTGGGGGGAAGACTTCATGGCGAAGCTCACCGGCGCGAAGGAGCA
TGGCGAAGGATTCGTAAACACGCTGGGAGACGTGCTGGCGCGACACGGTT
GGACCATCGTCTTCGTCCTTGTGGTGTACTATAACGTCAAAGATCGCATA
CGTCGGAGGTGGCGGATCTGGCAAAAATGGCTTGGGGGGAAGACTTCATG
GCGAAGCTCACCGGCGCGAAGGAGCATGGCGAAGGATTCGTAAACACGCT
GGGAGACGTGCTGGCGCGACACGGTTGGACCATCGTCTTCGTCCTTGTGG
TGTACTATAACGTCAAAGATCGCATACGTCGGAGGTGGCGGATCTGGCAA
AACGAGCGGTCGATCGCTGATGCAAACAGATCATCACGCAGGGCTGTGCT
CGATCGCGAACGGGCTAAGGTTGTGGCAGACAAGCAGGCGGAGGTACAGG
CTGCACTTGGCACCAAGGCGAATAACAAAAAGAAGAGTTAGCGAGCGGTC
GATCGCTGATGCAAACAGATCATCACGCAGGGCTGTGCTCGATCGCGAAC
GGGCTAAGGTTGTGGCAGACAAGCAGGCGGAGGTACAGGCTGCACTTGGC
ACCAAGGCGAATAACAAAAAGAAGAGTTAG
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