mRNA_H-elongata_contig127421.2031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig127421.2031.1
Unique NamemRNA_H-elongata_contig127421.2031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 193 bits (490), Expect = 6.950e-50
Identity = 103/267 (38.58%), Postives = 155/267 (58.05%), Query Frame = 1
Query:    7 RLDPEPTAMGEAQASSEWPQWKRVIAREMDGKLA*GVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG 807
            ++D  P ++ EA+AS EW +WK+ +  EM      G +   + P G+  +G + VF +K D+DG I +YK  LVAQG+ Q+ G+ Y E+ +P     S+R  L + A    E  Q+DV   YL  E+EEEIY+  PE Y D   +V  L+K +YGL  +G  W ++F  +L + GF + +AD CV++RI  G + + I V++DDLL+ S T  D  +   +L + F +KDLGE    +   I RDR  GT++  Q QYI+ +  RFG
Sbjct:  874 KIDNFPRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFG 1139          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 7.490e-49
Identity = 145/486 (29.84%), Postives = 229/486 (47.12%), Query Frame = 1
Query:   64 QWKRVIAREMDGKLA*GVWQVVER-PNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*RRPASF-------------------RPWQPANG---------RRG*RNAPDFLPRNRWGPNVGRGDG--QGRHFIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRRAG*DSKRVAFPTT-------GQGVHD------------PPIDVA-IKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            QW   I +EMDG    G +  +E+ P G+  + T+ VF  K D+ G I  +K  LVA+GF QV G  Y  SSS  P+ +SI++ +      G   R  D+   Y  A+++EE+YV + +       +V  +++A+YGL  +G  W  +    L   G+++ +AD CVFR+I+ G VV +IV+Y+DD++ V + + + ++    L    P+KDLGE ++Y  C I RD   GT T  Q  YI  + +RFG    AS                    +P + A G         R     A + + RN   P +       Q   ++       I    G+  +      A    RD  RR   G     G   G V   +  A    + V+  T+       G+GV +            P    A IK+  +N+GAI + +N FSS R++H+D++ H +R++ + G + VEY+   EQ+AD+LTK+
Sbjct:  750 QWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEE-EGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVG---GTV---VSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKA 1228          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 8.490e-49
Identity = 145/486 (29.84%), Postives = 229/486 (47.12%), Query Frame = 1
Query:   64 QWKRVIAREMDGKLA*GVWQVVER-PNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*RRPASF-------------------RPWQPANG---------RRG*RNAPDFLPRNRWGPNVGRGDG--QGRHFIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRRAG*DSKRVAFPTT-------GQGVHD------------PPIDVA-IKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            QW   I +EMDG    G +  +E+ P G+  + T+ VF  K D+ G I  +K  LVA+GF QV G  Y  SSS  P+ +SI++ +      G   R  D+   Y  A+++EE+YV + +       +V  +++A+YGL  +G  W  +    L   G+++ +AD CVFR+I+ G VV +IV+Y+DD++ V + + + ++    L    P+KDLGE ++Y  C I RD   GT T  Q  YI  + +RFG    AS                    +P + A G         R     A + + RN   P +       Q   ++       I    G+  +      A    RD  RR   G     G   G V   +  A    + V+  T+       G+GV +            P    A IK+  +N+GAI + +N FSS R++H+D++ H +R++ + G + VEY+   EQ+AD+LTK+
Sbjct: 1303 QWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEE-EGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVG---GTV---VSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKA 1781          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.610e-48
Identity = 143/483 (29.61%), Postives = 230/483 (47.62%), Query Frame = 1
Query:   67 WKRVIAREMDGKLA*GVWQVVE-RPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*----RRPASFRPWQPANGRRG*RNAPDFLPRNR-----WGPNVGRGD------GQGRH-----------------FIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRR---AG*DSKRVAFPTTGQGVHDPPIDVA-------------IKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            W++ +  E +G L  G +  V+  P G+  + ++  F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP PS ASI+++L +    G      DV   Y  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L   GF++ +AD CVFR+++  VVV++IV+Y+DD+LV  + + D ++    L   FP K+LGE  ++  C I RD  AGTL   Q  YI +M ERF      R PA+  P      +R      ++  R       W     R D         RH                 +++      I  Q G+     A+++  S +    RR   G     G  G VV  G +        S    +   G+GV +     A             IK+  +N+GAI + +N  SS RT+H+D+++H +R +   G + V++V   EQ+AD+LTK+
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--PGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGL-GLAVYVDASYADTEDRRSVSGLATTVG--GTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKA 1228          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.070e-48
Identity = 143/483 (29.61%), Postives = 230/483 (47.62%), Query Frame = 1
Query:   67 WKRVIAREMDGKLA*GVWQVVE-RPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*----RRPASFRPWQPANGRRG*RNAPDFLPRNR-----WGPNVGRGD------GQGRH-----------------FIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRR---AG*DSKRVAFPTTGQGVHDPPIDVA-------------IKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            W++ +  E +G L  G +  V+  P G+  + ++  F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP PS ASI+++L +    G      DV   Y  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L   GF++ +AD CVFR+++  VVV++IV+Y+DD+LV  + + D ++    L   FP K+LGE  ++  C I RD  AGTL   Q  YI +M ERF      R PA+  P      +R      ++  R       W     R D         RH                 +++      I  Q G+     A+++  S +    RR   G     G  G VV  G +        S    +   G+GV +     A             IK+  +N+GAI + +N  SS RT+H+D+++H +R +   G + V++V   EQ+AD+LTK+
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--PGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGL-GLAVYVDASYADTEDRRSVSGLATTVG--GTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKA 1607          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.140e-48
Identity = 143/483 (29.61%), Postives = 230/483 (47.62%), Query Frame = 1
Query:   67 WKRVIAREMDGKLA*GVWQVVE-RPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*----RRPASFRPWQPANGRRG*RNAPDFLPRNR-----WGPNVGRGD------GQGRH-----------------FIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRR---AG*DSKRVAFPTTGQGVHDPPIDVA-------------IKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            W++ +  E +G L  G +  V+  P G+  + ++  F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP PS ASI+++L +    G      DV   Y  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L   GF++ +AD CVFR+++  VVV++IV+Y+DD+LV  + + D ++    L   FP K+LGE  ++  C I RD  AGTL   Q  YI +M ERF      R PA+  P      +R      ++  R       W     R D         RH                 +++      I  Q G+     A+++  S +    RR   G     G  G VV  G +        S    +   G+GV +     A             IK+  +N+GAI + +N  SS RT+H+D+++H +R +   G + V++V   EQ+AD+LTK+
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--PGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGL-GLAVYVDASYADTEDRRSVSGLATTVG--GTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKA 1627          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.210e-48
Identity = 143/483 (29.61%), Postives = 230/483 (47.62%), Query Frame = 1
Query:   67 WKRVIAREMDGKLA*GVWQVVE-RPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*----RRPASFRPWQPANGRRG*RNAPDFLPRNR-----WGPNVGRGD------GQGRH-----------------FIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRR---AG*DSKRVAFPTTGQGVHDPPIDVA-------------IKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            W++ +  E +G L  G +  V+  P G+  + ++  F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP PS ASI+++L +    G      DV   Y  A ++EE++++LP    D   ++   ++A+YGL  +G  W       L   GF++ +AD CVFR+++  VVV++IV+Y+DD+LV  + + D ++    L   FP K+LGE  ++  C I RD  AGTL   Q  YI +M ERF      R PA+  P      +R      ++  R       W     R D         RH                 +++      I  Q G+     A+++  S +    RR   G     G  G VV  G +        S    +   G+GV +     A             IK+  +N+GAI + +N  SS RT+H+D+++H +R +   G + V++V   EQ+AD+LTK+
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--PGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGL-GLAVYVDASYADTEDRRSVSGLATTVG--GTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKA 1770          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 7.360e-48
Identity = 133/437 (30.43%), Postives = 211/437 (48.28%), Query Frame = 1
Query:   79 IAREMDGKLA*GVWQVVE-RPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*RRPASFRPWQPANGRRG*RNAPDFLPRNRWGPNVGRGDGQGRHFIRCAPTGEIQQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIGIRRA-----G*DSKRVAFPTTGQGVHDPPID-VAIKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            +  E++G L  G +  V+  P G+  +  +  F  K + +G+I K+K  LVA+GF ++  + Y  SSSP PS ASI+++L +    G      DV   Y  A ++EEI++ LP    D   ++   ++A+YGL  +G  W       L   GF++ +AD CVFR+++  VVV++IV+Y+DD+LV  + + D ++    L   FP K+LGE  ++ RC I RD  AGTL   Q  YI  M +RF  +  +      PA+            P    GP   R D +G  +    P   +    G  TE   +     G R HL  G G R         +V +    A     G   K   F         P     +I++  + +GAI + +N  S  RT+H+D++ H +R +   G + V++V   EQ+ D++TK+
Sbjct:  181 MREELEGHLGTGTFSFVDDAPEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRI----PAS------------PGVDLGPK--RDDEKGGEW----PVXAL----GCHTEDPRLPERDEGPRHHLPTGIGVRACRS-----IVSLSSTEAECIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDKQGAIALVQNPLSPGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHTDLVTKA 585          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 184 bits (466), Expect = 1.020e-46
Identity = 153/511 (29.94%), Postives = 236/511 (46.18%), Query Frame = 1
Query:   10 LDPEPTAMGEAQASSEWPQWKRVIAREMDGKLA*GVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*R--RPASF------------------RPWQPANG---------RRG*RNAPDFLPRNRWGPNVGRGDGQGRHF--IRCAPTGEIQQQPGTDTESAAIFMAHSGSR----DHLRRGTGGRGNEKGNGGGVV-----RIGIRRAG*DSKRVAFPTTGQGV------------------HDPPIDVAIKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            LD EP    EA +  +   WK   A E+       ++  VE+P G+ V+G + VFK K   DG IEKYK  LVA+GF QV+GI Y ++ +P    ASIR VL + A    +  Q+DV   +L  +++EEIY+  P  +      V  L+K++YGL  A   W KK   E E  GF+RS AD  +F ++ +GV+++ I +Y+DD+L+    +   D     L   F + DLG A + L   I RDR   TL+  Q QYI+ + ER G    RP S                   +P+Q A G         R     A   L ++   P         R F  +R +    +  +P ++  + A  + +  +      + RR T G+     +GG V      +  I ++  +++ VA  +  +                      P   V   +  +N+ A+ +AKN     RT+H+ ++HH +RD IE G +  EYV   +Q AD+LTK+
Sbjct:  985 LDGEPLTYEEAMSRPDADMWKAACAEELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVILI-IALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATIDPKPYQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFL-HGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDDLAIPASISRSSPGSKVTPLLLVDNQSAMALAKNSTFHDRTKHIAVRHHFIRDEIERGTLEAEYVPTDDQVADVLTKA 1493          
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.970e-46
Identity = 144/510 (28.24%), Postives = 236/510 (46.27%), Query Frame = 1
Query:   10 LDPEPTAMGEAQASSEWPQWKRVIAREMDGKLA*GVWQVVER-PNGKTVLGTRVVFKRKIDKDGRIEKYKCLLVAQGFRQVKGIHYEESSSPTPSQASIRMVLDMIAALG*EARQLDVDMTYLEAEVEEEIYVELPEAYRDSRKQVRILKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADRCVFRRILHGVVVVVIVVYIDDLLVVSATKGDKDQAARDLCSCFPIKDLGEASYYLRCHITRDRNAGTLTFDQHQYIQAMAERFG*RRPASFRPWQPANGRRG*R-----------------------------NAPDFLPRNRWGPNVGRGDGQGRHFIRCAPTGEI----QQQPGTDTESAAIFMAHSGSRDHLRRGTGGRGNEKGNGGGVVRIG---IRRAG*DSKRVAFPTT-------GQGVHDPPI-------------DVAIKIR*ENEGAIKMAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKS 1368
            ++PEP +  EA  S     W + ++ E++G +  G + +  + P G  V+  R VFK K D+ G+I K K  LVA+GF+Q  G+ Y E+ SPT + ASIR+V+ +      E   LD++  + +++++ E+ ++LP        ++  L K++YGL  A   + K+   +L   GF++S +D CV R ++   V+ +I +++DD+L  + TK   +     L    P K+LGE  ++L C  +RDR AGT+   Q  YI+++ ERF   R +S  P  PAN  R                                NA   + R+   P         +       T  +    +Q    D  +     A   S+   RR   G          +V +    +       K V+  T+       G GV +                   I +  +NEGAI +A+N  SS R++H+D++HH +R++ E GV+ V +V  KEQ+ADILTK+
Sbjct:  209 VEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY-AGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSI-PASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGA---------LVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKA 707          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127421.2031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A284QR88_ARMOS6.950e-5038.58Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A6H5JKS3_9PHAE7.490e-4929.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE8.490e-4929.84Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE4.610e-4829.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE5.070e-4829.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.140e-4829.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.210e-4829.61Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JLS1_9PHAE7.360e-4830.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU1.020e-4629.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JV80_9PHAE1.970e-4628.24Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127421contigH-elongata_contig127421:374..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1371
Cds size147
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127421.2031.1prot_H-elongata_contig127421.2031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig127421 1708..1854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.8287537-UTR-H-elongata_contig127421:373..14401622929755.8287537-UTR-H-elongata_contig127421:373..1440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127421 374..1440 +
1691679145.6304076-UTR-H-elongata_contig127421:373..14401691679145.6304076-UTR-H-elongata_contig127421:373..1440Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127421 374..1440 +
1622929755.8509145-UTR-H-elongata_contig127421:1550..17071622929755.8509145-UTR-H-elongata_contig127421:1550..1707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127421 1551..1707 +
1691679145.640081-UTR-H-elongata_contig127421:1550..17071691679145.640081-UTR-H-elongata_contig127421:1550..1707Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig127421 1551..1707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.867941-CDS-H-elongata_contig127421:1707..18541622929755.867941-CDS-H-elongata_contig127421:1707..1854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127421 1708..1854 +
1691679145.6495047-CDS-H-elongata_contig127421:1707..18541691679145.6495047-CDS-H-elongata_contig127421:1707..1854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig127421 1708..1854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig127421.2031.1

>prot_H-elongata_contig127421.2031.1 ID=prot_H-elongata_contig127421.2031.1|Name=mRNA_H-elongata_contig127421.2031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MAKNRFSSRRTRHVDIKHHLVRDVIEGGVVHVEYVRPKEQYADILTKSV
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mRNA from alignment at H-elongata_contig127421:374..1854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig127421.2031.1 ID=mRNA_H-elongata_contig127421.2031.1|Name=mRNA_H-elongata_contig127421.2031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1481bp|location=Sequence derived from alignment at H-elongata_contig127421:374..1854+ (Himanthalia elongata Himel1 dioecious)
ACGAGGCGGCTAGACCCAGAGCCGACAGCCATGGGCGAGGCGCAAGCGTC GTCGGAGTGGCCGCAATGGAAAAGGGTGATCGCGCGCGAGATGGATGGGA AACTTGCTTGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAACGGGAAGACG GTGTTGGGAACGAGAGTAGTTTTCAAGCGAAAAATCGACAAGGATGGAAG GATCGAGAAGTATAAATGTCTTCTTGTGGCGCAGGGTTTCAGGCAGGTCA AAGGCATACACTACGAAGAATCTTCCTCTCCGACTCCTTCGCAGGCCAGC ATTAGAATGGTACTAGACATGATCGCGGCTCTCGGCTGAGAGGCGCGGCA GCTGGACGTCGACATGACCTACCTGGAGGCCGAAGTGGAGGAGGAGATCT ACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCAGGATA TTAAAGAAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAAAA AAAGTTCGGGATTGAGCTCGAAGCGAAGGGTTTCCAGAGATCTCAAGCCG ACCGATGCGTGTTCCGGCGGATCCTCCACGGGGTAGTGGTAGTCGTCATT GTGGTCTACATCGACGACCTGCTGGTTGTTAGTGCGACGAAAGGTGACAA GGATCAAGCGGCGAGGGATCTGTGCTCCTGTTTCCCCATCAAGGATCTGG GGGAGGCTTCGTATTACCTGAGATGCCACATCACGCGGGACCGGAACGCC GGGACACTGACGTTCGACCAGCATCAGTACATTCAGGCTATGGCGGAACG TTTTGGGTGACGAAGACCAGCATCATTCCGTCCGTGGCAGCCCGCAAACG GACGCAGGGGTTGAAGAAATGCGCCAGATTTCCTACCGAGAAATCGTTGG GGCCCTAATGTGGGCAGAGGCGATGGCCAGGGCCGACATTTCATTCGCTG CGCACCAACTGGCGAAATTCAACAACAACCCGGGACCGACACAGAAAGCG CTGCAATATTTATGGCGCACTCGGGATCTCGGGATCACCTACGGAGGGGA ACCGGGGGGAGGGGCAAGTTATCAGCTTGGATCGACGCAGACTACGGCAC CTGCCCGGACACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGCTG GCGGGGCCATTAGTTGGTTCTCACGAGTGAAAAAGGTAACGGCGGCGGCG TCGTCCGAATCGGAATACGTCGCGCTGGCTGAGATAGTAAACGAGTTGCG TTTCCTACGACAGGTCAAGGAGTTCATGACCCCCCAATCGACGTCGCCAT CAAGATACGCTAGGAAAACGAAGGCGCAATCAAGATGGCGAAAAACCGCT TCAGCAGCCGACGAACGAGGCACGTGGACATCAAGCATCACCTTGTCCGC GACGTGATCGAGGGGGGGGTGGTTCACGTAGAATACGTTCGGCCCAAAGA ACAGTACGCCGACATCCTCACGAAGTCCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig127421:374..1854+

>mRNA_H-elongata_contig127421.2031.1 ID=mRNA_H-elongata_contig127421.2031.1|Name=mRNA_H-elongata_contig127421.2031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig127421:374..1854+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAAAAACCGCTTCAGCAGCCGACGAACGAGGCACGTGGACATCAA
GCATCACCTTGTCCGCGACGTGATCGAGGGGGGGGTGGTTCACGTAGAAT
ACGTTCGGCCCAAAGAACAGTACGCCGACATCCTCACGAAGTCCGTAATG
GCGAAAAACCGCTTCAGCAGCCGACGAACGAGGCACGTGGACATCAAGCA
TCACCTTGTCCGCGACGTGATCGAGGGGGGGGTGGTTCACGTAGAATACG
TTCGGCCCAAAGAACAGTACGCCGACATCCTCACGAAGTCCGTA
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