mRNA_H-elongata_contig119887.1537.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119887.1537.1
Unique NamemRNA_H-elongata_contig119887.1537.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.190e-45
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
            QL NSLQSHY+GALLRQLYKIVGSFDFLGDPVGVLSQLG GVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT
Sbjct: 7267 QLTNSLQSHYIGALLRQLYKIVGSFDFLGDPVGVLSQLGAGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 7353          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A6H5KKT6_9PHAE (VPS13_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.100e-40
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
            QL NSLQSHY+GALLRQLYKIVGSFDFLGDPVG    LG GVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTT IT
Sbjct:  528 QLTNSLQSHYIGALLRQLYKIVGSFDFLGDPVG----LGAGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTNIT 610          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: L1IXT3_GUITC (VPS13_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IXT3_GUITC)

HSP 1 Score: 108 bits (269), Expect = 5.910e-26
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS 294
            +L +S++ HY   L++QLYK+VGSF+FLG+PVG+++ LGTGV+DFFYEPA+G+MKSP  F KG+ KG++SL  N+T GV    +KIT  +  +++ LS
Sbjct:   74 ELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQGMMKSPAEFAKGMQKGSLSLFKNSTYGVFNAASKITSSMSKSLVQLS 171          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S4JFQ1_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JFQ1_GUITH)

HSP 1 Score: 108 bits (269), Expect = 2.700e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS 294
            +L +S++ HY   L++QLYK+VGSF+FLG+PVG+++ LGTGV+DFFYEPA+G+MKSP  F KG+ KG++SL  N+T GV    +KIT  +  +++ LS
Sbjct: 1313 ELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQGMMKSPAEFAKGMQKGSLSLFKNSTYGVFNAASKITSSMSKSLVQLS 1410          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S0HSC2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSC2_9CRYP)

HSP 1 Score: 107 bits (268), Expect = 3.650e-25
Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS 294
            +L +S++ HY   L++QLYK+VGSF+FLG+PVG+++ LGTGV+DFFYEPA+G+MKSP  F KG+ KG++SL  N+T GV    +KIT  +  +++ LS
Sbjct:  908 ELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQGMMKSPAEFAKGMHKGSLSLFKNSTYGVFNAASKITSSMSKSLVQLS 1005          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S0QEK5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEK5_9CRYP)

HSP 1 Score: 100 bits (250), Expect = 6.640e-25
Identity = 47/87 (54.02%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
            +L+ S+++HY   L++QLYK+VGSF+FLG+PVG+++ LGTGV DFFYEPA+G+ KSP  F KGV+KG+ SL+ ++T G +   +K+T
Sbjct:   78 ELVASIRNHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVHDFFYEPAQGITKSPAEFLKGVSKGSSSLLSHSTYGFMNAASKVT 164          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S0XUQ8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XUQ8_HEMAN)

HSP 1 Score: 103 bits (257), Expect = 1.370e-24
Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
            +L++S++ HY   LL QLYK++G+F+FLG+PVG+++ LGTGV DFFYEPA+G+ KSP  F KGV+KG+MSL+ N   GV    +KIT
Sbjct:  236 ELVSSIRKHYKTQLLHQLYKLIGAFEFLGNPVGLVNNLGTGVHDFFYEPAQGITKSPGEFAKGVSKGSMSLLRNINYGVFNGVSKIT 322          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: W7TRD9_9STRA (Vacuolar protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.020e-22
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKI 258
            ++  +LQ+HY    L Q Y+IVGS D +G+P+   S LGTGV DFFYEPA+GL+KSP AF +GV KGT SLV NTTSG LG   KI
Sbjct: 4745 EIWGTLQAHYTSNFLFQFYRIVGSIDIIGNPLSFASSLGTGVIDFFYEPAQGLVKSPRAFVRGVVKGTSSLVTNTTSGFLGVAGKI 4830          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: UPI001D05367F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D05367F)

HSP 1 Score: 94.0 bits (232), Expect = 1.330e-21
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    4 LMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
            LM+ ++ HY+     Q YKI+GS D +G+P+G+ S +GTGV DFFYEPA  + KSP  F  G+AKG+MSL+ N+  G+  FT+K+T
Sbjct:   81 LMDKIKKHYIRQATVQFYKILGSLDIIGNPIGLFSDIGTGVVDFFYEPASAITKSPEEFASGLAKGSMSLLKNSVHGIGNFTSKLT 166          
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S4L3E8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L3E8_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.530e-21
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    4 LMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKI 258
            LM+ +  HY+   L Q+YKIV SFD LG+PV ++S LGTGVKDFFYEPA+GL++SP AFG+GVAKG+ SLV ++  G+    +KI
Sbjct:  269 LMDRISQHYIQQGLTQVYKIVFSFDVLGNPVSLVSNLGTGVKDFFYEPAQGLVQSPMAFGRGVAKGSTSLVKHSVYGLSSTVSKI 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI2.190e-4596.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKT6_9PHAE2.100e-4090.80VPS13_C domain-containing protein n=1 Tax=Ectocarp... [more]
L1IXT3_GUITC5.910e-2653.06VPS13_C domain-containing protein n=1 Tax=Guillard... [more]
A0A7S4JFQ1_GUITH2.700e-2553.06Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S0HSC2_9CRYP3.650e-2553.06Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0QEK5_9CRYP6.640e-2554.02Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0XUQ8_HEMAN1.370e-2456.32Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
W7TRD9_9STRA1.020e-2259.30Vacuolar protein sorting-associated protein 13 fam... [more]
UPI001D05367F1.330e-2150.00uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S4L3E8_9EUKA1.530e-2157.65Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119887contigH-elongata_contig119887:431..1362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119887.1537.1prot_H-elongata_contig119887.1537.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119887 437..1362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.6904542-UTR-H-elongata_contig119887:430..4361622929702.6904542-UTR-H-elongata_contig119887:430..436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119887 431..436 +
1691679124.971534-UTR-H-elongata_contig119887:430..4361691679124.971534-UTR-H-elongata_contig119887:430..436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119887 431..436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.7113755-CDS-H-elongata_contig119887:436..5411622929702.7113755-CDS-H-elongata_contig119887:436..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119887 437..541 +
1691679124.9866376-CDS-H-elongata_contig119887:436..5411691679124.9866376-CDS-H-elongata_contig119887:436..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119887 437..541 +
1622929702.7259512-CDS-H-elongata_contig119887:1179..13621622929702.7259512-CDS-H-elongata_contig119887:1179..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119887 1180..1362 +
1691679124.9956267-CDS-H-elongata_contig119887:1179..13621691679124.9956267-CDS-H-elongata_contig119887:1179..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119887 1180..1362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119887.1537.1

>prot_H-elongata_contig119887.1537.1 ID=prot_H-elongata_contig119887.1537.1|Name=mRNA_H-elongata_contig119887.1537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEG
LMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS
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mRNA from alignment at H-elongata_contig119887:431..1362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119887.1537.1 ID=mRNA_H-elongata_contig119887.1537.1|Name=mRNA_H-elongata_contig119887.1537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig119887:431..1362+ (Himanthalia elongata Himel1 dioecious)
CAGCTCATGAACTCCCTGCAAAGCCACTACGTCGGCGCTCTCCTGAGGCA GCTGTACAAGATCGTGGGTAGCTTCGACTTTCTCGGCGACCCGGTCGGCG TCCTCAGTCAGGTACAAGTACAGGGATGGATGAGAGACAAGCCGATCCTA TTACAGAGCTTTTCGTTGGGTGCCCCCTTAAAATACGCCTCGGAGTTTCG GAAAAAGGAATGCCCGCCAGGCCGTACAGAACGTGTGTGTGTGTGTGTGT GTTTTTTTTGTTTTTTTTTCATTGTAGTATTTCTATTTAACAAAAATATG ATCTCCTTCCAGCCCTCCGAACATCCACGCCTTCTTTATAGCCATTGTTG TCCCTCCTCTAGTTAAGTACTAGTTTTTTTTTTCCCCCCACGACTGGAGA TCACATCTCCGGCTATCTGTTGCATGTTATTTTCTATACATTATTTCTAT TTCACTCTCCTCCTCCCCCCCACCCCATAATTACATGAAGGCGTTCTCTG TCGAGATTATTATTAATAGTATTAGATAGAGATTTCTTCCCTACTCGACC AAATATCACAGATGTATGTGTCGAGGTCGTGACAGAGGGGTCGCGAGAGA TGTGAATCTCATTGCCTCTTGAGACGGTAAACGAAGGATGCTGGGATGAT GTTTATGTTGTTGTTCTGACGACGATGCGGTGCGTTGCGGTGCGCCCTCC CTCCTTGAGAAAAACGAAACCACCACGTTTGTTTCTTCCCCCGATACAGC TCGGCACCGGAGTGAAGGATTTCTTCTACGAGCCGGCGGAGGGTTTGATG AAAAGCCCGACGGCGTTCGGCAAGGGGGTGGCCAAGGGAACTATGTCCCT CGTCGGCAACACGACGTCCGGGGTGCTGGGGTTCACCACCAAAATTACGT GCGTTTTACCCGATGCGATGCTTGTACTGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig119887:431..1362+

>mRNA_H-elongata_contig119887.1537.1 ID=mRNA_H-elongata_contig119887.1537.1|Name=mRNA_H-elongata_contig119887.1537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig119887:431..1362+ (Himanthalia elongata Himel1 dioecious)
ATGAACTCCCTGCAAAGCCACTACGTCGGCGCTCTCCTGAGGCAGCTGTA
CAAGATCGTGGGTAGCTTCGACTTTCTCGGCGACCCGGTCGGCGTCCTCA
GTCAGATGAACTCCCTGCAAAGCCACTACGTCGGCGCTCTCCTGAGGCAG
CTGTACAAGATCGTGGGTAGCTTCGACTTTCTCGGCGACCCGGTCGGCGT
CCTCAGTCAGCTCGGCACCGGAGTGAAGGATTTCTTCTACGAGCCGGCGG
AGGGTTTGATGAAAAGCCCGACGGCGTTCGGCAAGGGGGTGGCCAAGGGA
ACTATGTCCCTCGTCGGCAACACGACGTCCGGGGTGCTGGGGTTCACCAC
CAAAATTACGTGCGTTTTACCCGATGCGATGCTTGTACTGTCGCTCGGCA
CCGGAGTGAAGGATTTCTTCTACGAGCCGGCGGAGGGTTTGATGAAAAGC
CCGACGGCGTTCGGCAAGGGGGTGGCCAAGGGAACTATGTCCCTCGTCGG
CAACACGACGTCCGGGGTGCTGGGGTTCACCACCAAAATTACGTGCGTTT
TACCCGATGCGATGCTTGTACTGTCG
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