mRNA_H-elongata_contig119887.1537.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI) HSP 1 Score: 165 bits (418), Expect = 2.190e-45 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
QL NSLQSHY+GALLRQLYKIVGSFDFLGDPVGVLSQLG GVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT
Sbjct: 7267 QLTNSLQSHYIGALLRQLYKIVGSFDFLGDPVGVLSQLGAGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 7353
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A6H5KKT6_9PHAE (VPS13_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.100e-40 Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
QL NSLQSHY+GALLRQLYKIVGSFDFLGDPVG LG GVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTT IT
Sbjct: 528 QLTNSLQSHYIGALLRQLYKIVGSFDFLGDPVG----LGAGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTNIT 610
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: L1IXT3_GUITC (VPS13_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IXT3_GUITC) HSP 1 Score: 108 bits (269), Expect = 5.910e-26 Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS 294
+L +S++ HY L++QLYK+VGSF+FLG+PVG+++ LGTGV+DFFYEPA+G+MKSP F KG+ KG++SL N+T GV +KIT + +++ LS
Sbjct: 74 ELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQGMMKSPAEFAKGMQKGSLSLFKNSTYGVFNAASKITSSMSKSLVQLS 171
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S4JFQ1_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JFQ1_GUITH) HSP 1 Score: 108 bits (269), Expect = 2.700e-25 Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS 294
+L +S++ HY L++QLYK+VGSF+FLG+PVG+++ LGTGV+DFFYEPA+G+MKSP F KG+ KG++SL N+T GV +KIT + +++ LS
Sbjct: 1313 ELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQGMMKSPAEFAKGMQKGSLSLFKNSTYGVFNAASKITSSMSKSLVQLS 1410
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S0HSC2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSC2_9CRYP) HSP 1 Score: 107 bits (268), Expect = 3.650e-25 Identity = 52/98 (53.06%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKITCVLPDAMLVLS 294
+L +S++ HY L++QLYK+VGSF+FLG+PVG+++ LGTGV+DFFYEPA+G+MKSP F KG+ KG++SL N+T GV +KIT + +++ LS
Sbjct: 908 ELSSSIRKHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVQDFFYEPAQGMMKSPAEFAKGMHKGSLSLFKNSTYGVFNAASKITSSMSKSLVQLS 1005
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S0QEK5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEK5_9CRYP) HSP 1 Score: 100 bits (250), Expect = 6.640e-25 Identity = 47/87 (54.02%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
+L+ S+++HY L++QLYK+VGSF+FLG+PVG+++ LGTGV DFFYEPA+G+ KSP F KGV+KG+ SL+ ++T G + +K+T
Sbjct: 78 ELVASIRNHYRTQLIQQLYKLVGSFEFLGNPVGLVNNLGTGVHDFFYEPAQGITKSPAEFLKGVSKGSSSLLSHSTYGFMNAASKVT 164
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S0XUQ8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XUQ8_HEMAN) HSP 1 Score: 103 bits (257), Expect = 1.370e-24 Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
+L++S++ HY LL QLYK++G+F+FLG+PVG+++ LGTGV DFFYEPA+G+ KSP F KGV+KG+MSL+ N GV +KIT
Sbjct: 236 ELVSSIRKHYKTQLLHQLYKLIGAFEFLGNPVGLVNNLGTGVHDFFYEPAQGITKSPGEFAKGVSKGSMSLLRNINYGVFNGVSKIT 322
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: W7TRD9_9STRA (Vacuolar protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.020e-22 Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 QLMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKI 258
++ +LQ+HY L Q Y+IVGS D +G+P+ S LGTGV DFFYEPA+GL+KSP AF +GV KGT SLV NTTSG LG KI
Sbjct: 4745 EIWGTLQAHYTSNFLFQFYRIVGSIDIIGNPLSFASSLGTGVIDFFYEPAQGLVKSPRAFVRGVVKGTSSLVTNTTSGFLGVAGKI 4830
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: UPI001D05367F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D05367F) HSP 1 Score: 94.0 bits (232), Expect = 1.330e-21 Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 4 LMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKIT 261
LM+ ++ HY+ Q YKI+GS D +G+P+G+ S +GTGV DFFYEPA + KSP F G+AKG+MSL+ N+ G+ FT+K+T
Sbjct: 81 LMDKIKKHYIRQATVQFYKILGSLDIIGNPIGLFSDIGTGVVDFFYEPASAITKSPEEFASGLAKGSMSLLKNSVHGIGNFTSKLT 166
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Match: A0A7S4L3E8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L3E8_9EUKA) HSP 1 Score: 97.4 bits (241), Expect = 1.530e-21 Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 4 LMNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGLMKSPTAFGKGVAKGTMSLVGNTTSGVLGFTTKI 258
LM+ + HY+ L Q+YKIV SFD LG+PV ++S LGTGVKDFFYEPA+GL++SP AFG+GVAKG+ SLV ++ G+ +KI
Sbjct: 269 LMDRISQHYIQQGLTQVYKIVFSFDVLGNPVSLVSNLGTGVKDFFYEPAQGLVQSPMAFGRGVAKGSTSLVKHSVYGLSSTVSKI 353 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119887.1537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119887.1537.1 >prot_H-elongata_contig119887.1537.1 ID=prot_H-elongata_contig119887.1537.1|Name=mRNA_H-elongata_contig119887.1537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MNSLQSHYVGALLRQLYKIVGSFDFLGDPVGVLSQLGTGVKDFFYEPAEGback to top mRNA from alignment at H-elongata_contig119887:431..1362+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119887.1537.1 ID=mRNA_H-elongata_contig119887.1537.1|Name=mRNA_H-elongata_contig119887.1537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig119887:431..1362+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119887:431..1362+ >mRNA_H-elongata_contig119887.1537.1 ID=mRNA_H-elongata_contig119887.1537.1|Name=mRNA_H-elongata_contig119887.1537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig119887:431..1362+ (Himanthalia elongata Himel1 dioecious)back to top |