mRNA_H-elongata_contig119246.1484.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 8.960e-21 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 1 SWPEGGITLGMMYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
SWP+ GIT MM V+GIILA+GLV+LP + DHW FH++KLVR + RDM LLIY RFFHMAS+ + R +DG+
Sbjct: 750 SWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGT 826
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.250e-20 Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 1 SWPEGGITLGMMYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
SWP+ GIT MM V+ IIL +GLV+LP M DHW FH++KLVR + RDMFLLIY RFFHMAS+ + R + G+
Sbjct: 544 SWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGT 620
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JWP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP6_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 9.370e-12 Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1
Query: 34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
+Y V+GI++ GL R P + DHW + N+ L R M RD+F++ Y RFFH+A ++ D YD
Sbjct: 15 LYGVMGILITAGLTRKPRIIDHWGVGAHDNYPLARACMPRDLFIMFYDRFFHLAPPTGKLKKDDPQYD 82
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN93_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 5.970e-11 Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
+Y V+GI++ GL + P + DHW + +N LVR M RD+F+L Y RFFH+A ++ D YD
Sbjct: 82 LYGVMGILITTGLTKKPRIIDHWGVEAHNNNPLVRACMPRDLFILFYGRFFHLAPPTGKLKKHDPQYD 149
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JT54_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT54_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 1.990e-10 Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
+Y V+GI++ GL + P + DHW + N+ LVR M RD+F+L Y RFFH+A ++ D YD
Sbjct: 15 LYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAPPNGKLKKDDPQYD 82
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KUF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF1_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.130e-9 Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 1 SWPEGGITLGMMYTVLGIILALGLVR-------LPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
SWP+ IT MM V+GI L + DH FH++KLVR + RD FLLIY RFFHMAS+ + R +DG+
Sbjct: 601 SWPKKAITKSMMQGVIGIRSDLSAATGGHFQATNAAVHDHLSCHSFHDYKLVRACLPRDTFLLIYGRFFHMASSGAPERLQDGT 684
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 5.420e-9 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 73 VRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
V+L + DHW FH+ KLVR + RDMFLL Y RFFHMAS+ + R +DG+
Sbjct: 859 VQLAELQDHWSYHSFHDCKLVRACLPRDMFLLTYGRFFHMASSAAPKRLQDGT 911
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KHW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW0_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.810e-8 Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query: 34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
+Y V+GI++ L + P + D+W + N+ LVR M RD+F+L Y RFFH+A + D YD
Sbjct: 339 LYGVMGILITTRLTKKPRIIDYWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAPPTGKLNKDDPQYD 406
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5LD42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD42_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 2.320e-8 Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMA 195
+Y V+GI++ GL + P + DHW + N+ L R M RD+F+L Y RFFH+A
Sbjct: 111 LYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLFRACMPRDLFILFYGRFFHLA 164
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 6.140e-8 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLT 213
+Y V+GI++ G+ + + DHW + N+ LVR M RD+F+L Y RFFH+A A + T
Sbjct: 101 LYGVMGILITAGITQNRRITDHWGMELHDNYPLVRACMPRDLFVLFYGRFFHLAPATTAT 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig119246.1484.1 >prot_H-elongata_contig119246.1484.1 ID=prot_H-elongata_contig119246.1484.1|Name=mRNA_H-elongata_contig119246.1484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp MMYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRback to top mRNA from alignment at H-elongata_contig119246:34..270+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig119246.1484.1 ID=mRNA_H-elongata_contig119246.1484.1|Name=mRNA_H-elongata_contig119246.1484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig119246:34..270+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig119246:34..270+ >mRNA_H-elongata_contig119246.1484.1 ID=mRNA_H-elongata_contig119246.1484.1|Name=mRNA_H-elongata_contig119246.1484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig119246:34..270+ (Himanthalia elongata Himel1 dioecious)back to top |