mRNA_H-elongata_contig119246.1484.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig119246.1484.1
Unique NamemRNA_H-elongata_contig119246.1484.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.960e-21
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 SWPEGGITLGMMYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
            SWP+ GIT  MM  V+GIILA+GLV+LP + DHW    FH++KLVR  + RDM LLIY RFFHMAS+ +  R +DG+
Sbjct:  750 SWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGT 826          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.250e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 SWPEGGITLGMMYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
            SWP+ GIT  MM  V+ IIL +GLV+LP M DHW    FH++KLVR  + RDMFLLIY RFFHMAS+ +  R + G+
Sbjct:  544 SWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGT 620          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JWP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.370e-12
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
            +Y V+GI++  GL R P + DHW +    N+ L R  M RD+F++ Y RFFH+A      ++ D  YD
Sbjct:   15 LYGVMGILITAGLTRKPRIIDHWGVGAHDNYPLARACMPRDLFIMFYDRFFHLAPPTGKLKKDDPQYD 82          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN93_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.970e-11
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
            +Y V+GI++  GL + P + DHW +   +N  LVR  M RD+F+L Y RFFH+A      ++ D  YD
Sbjct:   82 LYGVMGILITTGLTKKPRIIDHWGVEAHNNNPLVRACMPRDLFILFYGRFFHLAPPTGKLKKHDPQYD 149          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JT54_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT54_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.990e-10
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
            +Y V+GI++  GL + P + DHW +    N+ LVR  M RD+F+L Y RFFH+A      ++ D  YD
Sbjct:   15 LYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAPPNGKLKKDDPQYD 82          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KUF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-9
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 SWPEGGITLGMMYTVLGIILALGLVR-------LPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
            SWP+  IT  MM  V+GI   L              + DH     FH++KLVR  + RD FLLIY RFFHMAS+ +  R +DG+
Sbjct:  601 SWPKKAITKSMMQGVIGIRSDLSAATGGHFQATNAAVHDHLSCHSFHDYKLVRACLPRDTFLLIYGRFFHMASSGAPERLQDGT 684          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.420e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   73 VRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGS 231
            V+L  + DHW    FH+ KLVR  + RDMFLL Y RFFHMAS+ +  R +DG+
Sbjct:  859 VQLAELQDHWSYHSFHDCKLVRACLPRDMFLLTYGRFFHMASSAAPKRLQDGT 911          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5KHW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.810e-8
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLTRRKDGSYD 237
            +Y V+GI++   L + P + D+W +    N+ LVR  M RD+F+L Y RFFH+A       + D  YD
Sbjct:  339 LYGVMGILITTRLTKKPRIIDYWGVEAHDNYPLVRACMPRDLFILFYGRFFHLAPPTGKLNKDDPQYD 406          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5LD42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD42_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.320e-8
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMA 195
            +Y V+GI++  GL + P + DHW +    N+ L R  M RD+F+L Y RFFH+A
Sbjct:  111 LYGVMGILITTGLTKKPRIIDHWGVEAHDNYPLFRACMPRDLFILFYGRFFHLA 164          
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.140e-8
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   34 MYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSRFFHMASALSLT 213
            +Y V+GI++  G+ +   + DHW +    N+ LVR  M RD+F+L Y RFFH+A A + T
Sbjct:  101 LYGVMGILITAGITQNRRITDHWGMELHDNYPLVRACMPRDLFVLFYGRFFHLAPATTAT 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119246.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JFU5_9PHAE8.960e-2158.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3T1_9PHAE2.250e-2057.14DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JWP6_9PHAE9.370e-1239.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN93_9PHAE5.970e-1141.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT54_9PHAE1.990e-1041.18DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KUF1_9PHAE1.130e-942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVH8_9PHAE5.420e-952.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHW0_9PHAE1.810e-838.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD42_9PHAE2.320e-844.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC56_9PHAE6.140e-841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119246contigH-elongata_contig119246:34..270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size237
Cds size207
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.725171-UTR-H-elongata_contig119246:33..631622929697.725171-UTR-H-elongata_contig119246:33..63Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119246 34..63 +
1691679122.9383056-UTR-H-elongata_contig119246:33..631691679122.9383056-UTR-H-elongata_contig119246:33..63Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig119246 34..63 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.7347572-CDS-H-elongata_contig119246:63..2701622929697.7347572-CDS-H-elongata_contig119246:63..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119246 64..270 +
1691679122.9464505-CDS-H-elongata_contig119246:63..2701691679122.9464505-CDS-H-elongata_contig119246:63..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig119246 64..270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119246.1484.1prot_H-elongata_contig119246.1484.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig119246 64..270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig119246.1484.1

>prot_H-elongata_contig119246.1484.1 ID=prot_H-elongata_contig119246.1484.1|Name=mRNA_H-elongata_contig119246.1484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MMYTVLGIILALGLVRLPGMPDHWDLSDFHNFKLVRQSMKRDMFLLIYSR
FFHMASALSLTRRKDGSYD
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mRNA from alignment at H-elongata_contig119246:34..270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig119246.1484.1 ID=mRNA_H-elongata_contig119246.1484.1|Name=mRNA_H-elongata_contig119246.1484.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig119246:34..270+ (Himanthalia elongata Himel1 dioecious)
TCGTGGCCCGAGGGTGGCATTACGCTAGGCATGATGTACACCGTCCTTGG CATCATCTTGGCGCTGGGACTTGTGAGGCTCCCGGGAATGCCAGACCACT GGGATTTGAGTGACTTCCACAACTTTAAGCTGGTCCGACAGAGTATGAAG CGAGATATGTTTCTCCTCATCTACAGTCGGTTTTTCCACATGGCATCCGC ACTCTCTCTTACGAGACGAAAAGATGGATCGTACGAT
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Coding sequence (CDS) from alignment at H-elongata_contig119246:34..270+

>mRNA_H-elongata_contig119246.1484.1 ID=mRNA_H-elongata_contig119246.1484.1|Name=mRNA_H-elongata_contig119246.1484.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig119246:34..270+ (Himanthalia elongata Himel1 dioecious)
ATGATGTACACCGTCCTTGGCATCATCTTGGCGCTGGGACTTGTGAGGCT
CCCGGGAATGCCAGACCACTGGGATTTGAGTGACTTCCACAACTTTAAGC
TGGTCCGACAGAGTATGAAGCGAGATATGTTTCTCCTCATCTACAGTCGG
TTTTTCCACATGGCATCCGCACTCTCTCTTACGAGACGAAAAGATGGATC
GTACGATATGATGTACACCGTCCTTGGCATCATCTTGGCGCTGGGACTTG
TGAGGCTCCCGGGAATGCCAGACCACTGGGATTTGAGTGACTTCCACAAC
TTTAAGCTGGTCCGACAGAGTATGAAGCGAGATATGTTTCTCCTCATCTA
CAGTCGGTTTTTCCACATGGCATCCGCACTCTCTCTTACGAGACGAAAAG
ATGGATCGTACGAT
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