mRNA_H-elongata_contig118939.1468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118939.1468.1
Unique NamemRNA_H-elongata_contig118939.1468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.420e-33
Identity = 76/156 (48.72%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   52 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG---------GGH-----------------------------------------EDAEVRPYPGLVDGLDSILLEDE--VVSVGCGSRYTLVLS 363
            QLGLGTVGE +  P VVDAL G+GTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGW+RFG         G H                                         E+ EVRPYPGLVDG+D IL +D+  +VSV CG+RYTL  S
Sbjct:  353 QLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGFHRRPQQDTTASVIGDSATINDSGASPASGKRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATS 508          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.910e-23
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   52 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG 240
            QLGLGTVGE +  P VVDAL G+GTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGW+RFG
Sbjct:  338 QLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFG 400          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A1V9ZBP0_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBP0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.700e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   85 WKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVDGLDSILLEDEVVSVGCGSRYTLVLS 363
            +KPM V++L+G+G     G FTG+  VACGAWHT A++TTGD+Y+WGW + G       +++P+P LVD      LE  V+ + CG+R T +L+
Sbjct:  199 FKPMRVESLDGVGGY-IGGRFTGLKKVACGAWHTVALTTTGDVYSWGWGQHGQLCGPILDMQPFPTLVD------LESAVLDIACGTRLTALLT 285          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A2D4BK71_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK71_PYTIN)

HSP 1 Score: 81.6 bits (200), Expect = 9.120e-16
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 1
Query:    1 WLH-----TDFNMRLCSRVRINQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVDGLDSILLEDE----VVSVGCGSRYTLVLSR 366
            W H     TD  +  C     +QLG G    +A  P VVDAL+G+     DG   G+ +VACG WHTAAVS+ GD+YTWGW   G  G  D+     P +VD  D    +D+      +V C +R+T+VLSR
Sbjct:  198 WKHSAFITTDNKLFTCGWGLYHQLGHGDTRNEA-APRVVDALDGV-----DG---GVVAVACGWWHTAAVSSGGDVYTWGWGPNGQLGSTDSTKHVLPRVVDTTDEYFSQDDPGHHATAVACSARFTVVLSR 320          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.050e-15
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   52 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG-------GGHEDAEVRPYPGLVDGLDSILLEDEVVSVGCGSRYTLVL 360
            QLG G   ++  +P +V+ L G+G +  +GT TGI  V+CG WHTAA++T GDLYTWGW RFG        G +   V+P P LV  ++          +  G+R+T V+
Sbjct:   48 QLGHGQAVDEP-EPRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLGYGASSGEDRDLVQPTPRLVTCVE------HAQELSAGARHTAVV 150          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6G0XKT7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKT7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.930e-15
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   76 EKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 288
            E   KP  V  LEG+G +     F+G++ VACGAWHTAA++TTGD+YTWGW + G  GHE  E + +P L+D
Sbjct:  180 ENVAKPTCVTCLEGVGELLGTKKFSGLAEVACGAWHTAALTTTGDVYTWGWGQHGQLGHETLESQVFPKLLD 251          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6A3KHE2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KHE2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.510e-14
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   49 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEV-RPYPGLVDGLDSILLEDE---VVSVGCGSRYTLVLSR 366
            NQLG G+  +   +P VVDAL+G+ +         +  V CG WHTAA++ +GDLYTWGW + G  GHE A+  +  P +VD + S    DE   VVS+ CG+R+TL L R
Sbjct:  208 NQLGHGST-QNELEPAVVDALQGLDSE--------VVQVVCGNWHTAALTASGDLYTWGWGKDGQLGHEAAKATQVLPRVVD-VPSTASSDETLDVVSIACGNRFTLALCR 308          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.100e-13
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   49 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 288
            +QLG GT     + P  V +LEG+G ++ +  FTG++ VACGAWHTAA++TTGD+YTWGW + G  GH     + +P L+D
Sbjct:  189 HQLGHGTTNN-VFTPTRVRSLEGVGQLQRNH-FTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLASQAFPTLLD 267          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A485KSG2_9STRA (Aste57867_11047 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSG2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.170e-13
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   91 PMVVDALEGIGTMRADGT-FTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 288
            P  V +LEG+G    DG  F+G++SVACGAWHTAA++TTGD+YTWGW + G  GH     +P+P L+D
Sbjct:  206 PTCVQSLEGVGAF--DGQHFSGLASVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLTSQPHPALLD 271          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A3M6VGR6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGR6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.290e-13
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   49 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGGGHEDAEV--RPYPGLVDGLDSILLEDE---VVSVGCGSRYTLVLSR 366
            NQLG G+  ++  +P++VDAL G+ +         +  VACG WHTAA++ +GDLYTWGW + G    +A V  +  P +V  L S    D+   V+ + CG+RYTL   R
Sbjct:  248 NQLGHGSPQDEL-RPVIVDALRGLDS--------DVVQVACGNWHTAALTASGDLYTWGWGKDGQLAHEASVSMQVLPRVVSVLSSPAASDDAKDVMDIACGNRYTLAACR 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF1_9PHAE1.420e-3348.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN13_ECTSI1.910e-2376.19Regulator of chromosome condensation-like protein ... [more]
A0A1V9ZBP0_9STRA6.700e-1644.68Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A2D4BK71_PYTIN9.120e-1640.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2WVU6_9STRA5.050e-1540.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XKT7_9STRA7.930e-1551.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3KHE2_9STRA1.510e-1444.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W4GMU7_9STRA3.100e-1348.15Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A485KSG2_9STRA3.170e-1354.41Aste57867_11047 protein n=1 Tax=Aphanomyces stella... [more]
A0A3M6VGR6_9STRA4.290e-1339.64Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118939contigH-elongata_contig118939:178..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog2880.D8LN13
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118939.1468.1prot_H-elongata_contig118939.1468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118939 199..1038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.2102597-UTR-H-elongata_contig118939:177..1981622929696.2102597-UTR-H-elongata_contig118939:177..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118939 178..198 +
1691679122.456206-UTR-H-elongata_contig118939:177..1981691679122.456206-UTR-H-elongata_contig118939:177..198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118939 178..198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.2257435-CDS-H-elongata_contig118939:198..4161622929696.2257435-CDS-H-elongata_contig118939:198..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118939 199..416 +
1691679122.468944-CDS-H-elongata_contig118939:198..4161691679122.468944-CDS-H-elongata_contig118939:198..416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118939 199..416 +
1622929696.2362885-CDS-H-elongata_contig118939:911..10381622929696.2362885-CDS-H-elongata_contig118939:911..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118939 912..1038 +
1691679122.477685-CDS-H-elongata_contig118939:911..10381691679122.477685-CDS-H-elongata_contig118939:911..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118939 912..1038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118939.1468.1

>prot_H-elongata_contig118939.1468.1 ID=prot_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MRLCSRVRINQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVAC
GAWHTAAVSTTGDLYTWGWSRFGGGHEDAEVRPYPGLVDGLDSILLEDEV
VSVGCGSRYTLVLSR
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mRNA from alignment at H-elongata_contig118939:178..1038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118939.1468.1 ID=mRNA_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig118939:178..1038+ (Himanthalia elongata Himel1 dioecious)
TGGCTGCATACCGATTTTAACATGCGCCTCTGCTCCCGCGTTCGAATAAA CCAGCTTGGCCTGGGGACCGTCGGCGAGAAGGCGTGGAAGCCAATGGTCG TCGATGCCCTTGAAGGCATTGGCACGATGAGAGCGGACGGAACGTTCACG GGTATTTCATCGGTGGCCTGTGGGGCGTGGCACACCGCGGCAGTCTCCAC CACCGGAGACTTGTACACCTGGGGGTGGTCCCGCTTCGGGTGAGCTCCCC ACGTGACACATCCCTCTACCACCCAGGGCAACGTACGTACTCGCACGCGT TGTAAATAGTCGTTTGAAGCGATGTTCAAAGCAAATACAAGGCCAGGCCG CGCAGCCATGCAGCCGAAGTAAATGTGATAGTTAATACTTCACAAGCGAA GGTTATAGATGTTTTACCCTCTCGCCACGAAATCCGCACGGGATATGAGA TATGTCCGAAATACGAATACATTACTTTTCTCAGCGGACCCCTCTTTTAG CGTCGAATCCACCGCGCATTTTTTCGCGCGGCGATTTTGATGTCATCCCC CTAGAACTGCTTGGTCCTGGCCTTCAACATCTGTTTTGTTTTTGTCTTTT ATTCCCTCCGGTGAACGAAGGGCTCTAGGGGACCTGCCAAAAGACGAAGC CGCCCCTCGAAGTATCGCCCACGATGGAGCGCGACAGCAGAATGACGAGC CAGAAGACGGCGTCCATAGAGCCGGTGCGACCAGGGGGGGACACGAGGAT GCTGAGGTGCGCCCTTACCCTGGTTTGGTGGATGGCTTGGATTCCATCCT CTTGGAAGACGAAGTAGTGTCCGTCGGGTGCGGGTCTCGGTACACGCTGG TGCTGTCGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig118939:178..1038+

>mRNA_H-elongata_contig118939.1468.1 ID=mRNA_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig118939:178..1038+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCTCTGCTCCCGCGTTCGAATAAACCAGCTTGGCCTGGGGACCGT
CGGCGAGAAGGCGTGGAAGCCAATGGTCGTCGATGCCCTTGAAGGCATTG
GCACGATGAGAGCGGACGGAACGTTCACGGGTATTTCATCGGTGGCCTGT
GGGGCGTGGCACACCGCGGCAGTCTCCACCACCGGAGACTTGTACACCTG
GGGGTGGTCCCGCTTCGGATGCGCCTCTGCTCCCGCGTTCGAATAAACCA
GCTTGGCCTGGGGACCGTCGGCGAGAAGGCGTGGAAGCCAATGGTCGTCG
ATGCCCTTGAAGGCATTGGCACGATGAGAGCGGACGGAACGTTCACGGGT
ATTTCATCGGTGGCCTGTGGGGCGTGGCACACCGCGGCAGTCTCCACCAC
CGGAGACTTGTACACCTGGGGGTGGTCCCGCTTCGGGGGGGGACACGAGG
ATGCTGAGGTGCGCCCTTACCCTGGTTTGGTGGATGGCTTGGATTCCATC
CTCTTGGAAGACGAAGTAGTGTCCGTCGGGTGCGGGTCTCGGTACACGCT
GGTGCTGTCGCGGGGGGGGACACGAGGATGCTGAGGTGCGCCCTTACCCT
GGTTTGGTGGATGGCTTGGATTCCATCCTCTTGGAAGACGAAGTAGTGTC
CGTCGGGTGCGGGTCTCGGTACACGCTGGTGCTGTCGCGG
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