prot_H-elongata_contig118939.1468.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig118939.1468.1
Unique Nameprot_H-elongata_contig118939.1468.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.870e-34
Identity = 76/157 (48.41%), Postives = 90/157 (57.32%), Query Frame = 0
Query:   10 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG---------GGH-----------------------------------------EDAEVRPYPGLVDGLDSILLEDE--VVSVGCGSRYTLVLS 114
             QLGLGTVGE +  P VVDAL G+GTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGW+RFG         G H                                         E+ EVRPYPGLVDG+D IL +D+  +VSV CG+RYTL  S
Sbjct:  352 GQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGFHRRPQQDTTASVIGDSATINDSGASPASGKRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATS 508          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.080e-23
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0
Query:   10 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG 73
             QLGLGTVGE +  P VVDAL G+GTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGW+RFG
Sbjct:  337 GQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFG 400          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A1V9ZBP0_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBP0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.250e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   22 WKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVDGLDSILLEDEVVSVGCGSRYTLVLS 114
            +KPM V++L+G+G     G FTG+  VACGAWHT A++TTGD+Y+WGW + G       +++P+P LVD      LE  V+ + CG+R T +L+
Sbjct:  199 FKPMRVESLDGVGGY-IGGRFTGLKKVACGAWHTVALTTTGDVYSWGWGQHGQLCGPILDMQPFPTLVD------LESAVLDIACGTRLTALLT 285          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.980e-15
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0
Query:   11 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG-------GGHEDAEVRPYPGLVDGLDSILLEDEVVSVGCGSRYTLVL 113
            QLG G   ++  +P +V+ L G+G +  +GT TGI  V+CG WHTAA++T GDLYTWGW RFG        G +   V+P P LV  ++          +  G+R+T V+
Sbjct:   48 QLGHGQAVDEP-EPRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLGYGASSGEDRDLVQPTPRLVTCVE------HAQELSAGARHTAVV 150          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6G0XKT7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKT7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.230e-15
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 0
Query:   19 EKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 89
            E   KP  V  LEG+G +     F+G++ VACGAWHTAA++TTGD+YTWGW + G  GHE  E + +P L+D
Sbjct:  180 ENVAKPTCVTCLEGVGELLGTKKFSGLAEVACGAWHTAALTTTGDVYTWGWGQHGQLGHETLESQVFPKLLD 251          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A2D4BK71_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK71_PYTIN)

HSP 1 Score: 79.0 bits (193), Expect = 6.700e-15
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 0
Query:   10 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVDGLDSILLEDE----VVSVGCGSRYTLVLSR 115
            +QLG G    +A  P VVDAL+G+     DG   G+ +VACG WHTAAVS+ GD+YTWGW   G  G  D+     P +VD  D    +D+      +V C +R+T+VLSR
Sbjct:  219 HQLGHGDTRNEA-APRVVDALDGV-----DG---GVVAVACGWWHTAAVSSGGDVYTWGWGPNGQLGSTDSTKHVLPRVVDTTDEYFSQDDPGHHATAVACSARFTVVLSR 320          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6A3KHE2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KHE2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.580e-15
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 0
Query:   10 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEV-RPYPGLVDGLDSILLEDE---VVSVGCGSRYTLVLSR 115
            NQLG G+  +   +P VVDAL+G+ +         +  V CG WHTAA++ +GDLYTWGW + G  GHE A+  +  P +VD + S    DE   VVS+ CG+R+TL L R
Sbjct:  208 NQLGHGST-QNELEPAVVDALQGLDSE--------VVQVVCGNWHTAALTASGDLYTWGWGKDGQLGHEAAKATQVLPRVVD-VPSTASSDETLDVVSIACGNRFTLALCR 308          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.770e-13
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0
Query:   10 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 89
            +QLG GT     + P  V +LEG+G ++ +  FTG++ VACGAWHTAA++TTGD+YTWGW + G  GH     + +P L+D
Sbjct:  189 HQLGHGTTNN-VFTPTRVRSLEGVGQLQRNH-FTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLASQAFPTLLD 267          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A3M6VGR6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGR6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.460e-13
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 0
Query:   10 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGGGHEDAEV--RPYPGLVDGLDSILLEDE---VVSVGCGSRYTLVLSR 115
            NQLG G+  ++  +P++VDAL G+ +         +  VACG WHTAA++ +GDLYTWGW + G    +A V  +  P +V  L S    D+   V+ + CG+RYTL   R
Sbjct:  248 NQLGHGSPQDEL-RPVIVDALRGLDS--------DVVQVACGNWHTAALTASGDLYTWGWGKDGQLAHEASVSMQVLPRVVSVLSSPAASDDAKDVMDIACGNRYTLAACR 349          
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A485KSG2_9STRA (Aste57867_11047 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSG2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.500e-13
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0
Query:   24 PMVVDALEGIGTMRADGT-FTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 89
            P  V +LEG+G    DG  F+G++SVACGAWHTAA++TTGD+YTWGW + G  GH     +P+P L+D
Sbjct:  206 PTCVQSLEGVGAF--DGQHFSGLASVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLTSQPHPALLD 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF1_9PHAE7.870e-3448.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN13_ECTSI1.080e-2375.00Regulator of chromosome condensation-like protein ... [more]
A0A1V9ZBP0_9STRA5.250e-1644.68Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A7S2WVU6_9STRA3.980e-1540.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XKT7_9STRA6.230e-1551.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4BK71_PYTIN6.700e-1544.14Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A3KHE2_9STRA8.580e-1544.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W4GMU7_9STRA1.770e-1348.15Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A3M6VGR6_9STRA2.460e-1339.64Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A485KSG2_9STRA2.500e-1354.41Aste57867_11047 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 4..115
e-value: 5.5E-19
score: 70.2
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 11..113
NoneNo IPR availablePFAMPF13540RCC1_2coord: 45..73
e-value: 7.6E-7
score: 28.8
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 12..114
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 48..58
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 62..115
score: 10.625

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118939contigH-elongata_contig118939:199..1038 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118939.1468.1mRNA_H-elongata_contig118939.1468.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig118939 178..1038 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig118939.1468.1 ID=prot_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MRLCSRVRINQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVAC
GAWHTAAVSTTGDLYTWGWSRFGGGHEDAEVRPYPGLVDGLDSILLEDEV
VSVGCGSRYTLVLSR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens