mRNA_H-elongata_contig118939.1468.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.420e-33 Identity = 76/156 (48.72%), Postives = 90/156 (57.69%), Query Frame = 1
Query: 52 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG---------GGH-----------------------------------------EDAEVRPYPGLVDGLDSILLEDE--VVSVGCGSRYTLVLS 363
QLGLGTVGE + P VVDAL G+GTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGW+RFG G H E+ EVRPYPGLVDG+D IL +D+ +VSV CG+RYTL S
Sbjct: 353 QLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGFHRRPQQDTTASVIGDSATINDSGASPASGKRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATS 508
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.910e-23 Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 52 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG 240
QLGLGTVGE + P VVDAL G+GTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGW+RFG
Sbjct: 338 QLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFG 400
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A1V9ZBP0_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBP0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 6.700e-16 Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 85 WKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVDGLDSILLEDEVVSVGCGSRYTLVLS 363
+KPM V++L+G+G G FTG+ VACGAWHT A++TTGD+Y+WGW + G +++P+P LVD LE V+ + CG+R T +L+
Sbjct: 199 FKPMRVESLDGVGGY-IGGRFTGLKKVACGAWHTVALTTTGDVYSWGWGQHGQLCGPILDMQPFPTLVD------LESAVLDIACGTRLTALLT 285
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A2D4BK71_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK71_PYTIN) HSP 1 Score: 81.6 bits (200), Expect = 9.120e-16 Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 1 WLH-----TDFNMRLCSRVRINQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVDGLDSILLEDE----VVSVGCGSRYTLVLSR 366
W H TD + C +QLG G +A P VVDAL+G+ DG G+ +VACG WHTAAVS+ GD+YTWGW G G D+ P +VD D +D+ +V C +R+T+VLSR
Sbjct: 198 WKHSAFITTDNKLFTCGWGLYHQLGHGDTRNEA-APRVVDALDGV-----DG---GVVAVACGWWHTAAVSSGGDVYTWGWGPNGQLGSTDSTKHVLPRVVDTTDEYFSQDDPGHHATAVACSARFTVVLSR 320
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 5.050e-15 Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 52 QLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFG-------GGHEDAEVRPYPGLVDGLDSILLEDEVVSVGCGSRYTLVL 360
QLG G ++ +P +V+ L G+G + +GT TGI V+CG WHTAA++T GDLYTWGW RFG G + V+P P LV ++ + G+R+T V+
Sbjct: 48 QLGHGQAVDEP-EPRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLGYGASSGEDRDLVQPTPRLVTCVE------HAQELSAGARHTAVV 150
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6G0XKT7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKT7_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 7.930e-15 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 76 EKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 288
E KP V LEG+G + F+G++ VACGAWHTAA++TTGD+YTWGW + G GHE E + +P L+D
Sbjct: 180 ENVAKPTCVTCLEGVGELLGTKKFSGLAEVACGAWHTAALTTTGDVYTWGWGQHGQLGHETLESQVFPKLLD 251
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A6A3KHE2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KHE2_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.510e-14 Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 49 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEV-RPYPGLVDGLDSILLEDE---VVSVGCGSRYTLVLSR 366
NQLG G+ + +P VVDAL+G+ + + V CG WHTAA++ +GDLYTWGW + G GHE A+ + P +VD + S DE VVS+ CG+R+TL L R
Sbjct: 208 NQLGHGST-QNELEPAVVDALQGLDSE--------VVQVVCGNWHTAALTASGDLYTWGWGKDGQLGHEAAKATQVLPRVVD-VPSTASSDETLDVVSIACGNRFTLALCR 308
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.100e-13 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 49 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 288
+QLG GT + P V +LEG+G ++ + FTG++ VACGAWHTAA++TTGD+YTWGW + G GH + +P L+D
Sbjct: 189 HQLGHGTTNN-VFTPTRVRSLEGVGQLQRNH-FTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLASQAFPTLLD 267
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A485KSG2_9STRA (Aste57867_11047 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSG2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.170e-13 Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 91 PMVVDALEGIGTMRADGT-FTGISSVACGAWHTAAVSTTGDLYTWGWSRFGG-GHEDAEVRPYPGLVD 288
P V +LEG+G DG F+G++SVACGAWHTAA++TTGD+YTWGW + G GH +P+P L+D
Sbjct: 206 PTCVQSLEGVGAF--DGQHFSGLASVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLTSQPHPALLD 271
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Match: A0A3M6VGR6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGR6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 4.290e-13 Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 49 NQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWSRFGGGHEDAEV--RPYPGLVDGLDSILLEDE---VVSVGCGSRYTLVLSR 366
NQLG G+ ++ +P++VDAL G+ + + VACG WHTAA++ +GDLYTWGW + G +A V + P +V L S D+ V+ + CG+RYTL R
Sbjct: 248 NQLGHGSPQDEL-RPVIVDALRGLDS--------DVVQVACGNWHTAALTASGDLYTWGWGKDGQLAHEASVSMQVLPRVVSVLSSPAASDDAKDVMDIACGNRYTLAACR 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118939.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118939.1468.1 >prot_H-elongata_contig118939.1468.1 ID=prot_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MRLCSRVRINQLGLGTVGEKAWKPMVVDALEGIGTMRADGTFTGISSVACback to top mRNA from alignment at H-elongata_contig118939:178..1038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118939.1468.1 ID=mRNA_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=861bp|location=Sequence derived from alignment at H-elongata_contig118939:178..1038+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118939:178..1038+ >mRNA_H-elongata_contig118939.1468.1 ID=mRNA_H-elongata_contig118939.1468.1|Name=mRNA_H-elongata_contig118939.1468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig118939:178..1038+ (Himanthalia elongata Himel1 dioecious)back to top |