mRNA_H-elongata_contig116576.1300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116576.1300.1
Unique NamemRNA_H-elongata_contig116576.1300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 236 bits (603), Expect = 7.570e-69
Identity = 137/361 (37.95%), Postives = 205/361 (56.79%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQ--VGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVF-RRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVTKT-SIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITYG 1077
            +P ++ EA  S+EWP+WK AI +EM      G + +VE PK   ++G++ VF+ K + +  IE YK RLVAQGF QV GI ++E+ +P    ASI ++L++ A   WE  Q+DV  AYL  D+EEE+Y++ P    +  K+  V  LK+ + GL  +G  + KK   EL +    RS+ D CVF  R    V++      VDD  +A  TK       R++ +   + DLGE  + LG  +  DR+  TL+  QH YI  +  RF +    S+   +  G  LS    P T  + E+M  IPYRE++G+LM+AA  TRP+I++A   L++F  NPG  HW AA++  + L  TR+  +T+G
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIA-GTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFG 470          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 240 bits (613), Expect = 2.030e-67
Identity = 129/356 (36.24%), Postives = 205/356 (57.58%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQVGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITY 1074
            EP ++ EAQAS EWP+W++A+  E D     G W++ + PK++  +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G+ + E+ +P     SIR +L++     WE  Q+DV  AYL  D++EE+Y+  PE + D   ++  L+K + GL  +G  W +K   EL    ++R +ADPCV+        V     +VDDLL+ T + +  E+  RDL     + DLGE    +G  I  DR AG +   Q  YI+++ +R+ +   + +   +       ++    +EE ++     Y  +VG+LM+AA  TRP+IS+A   L+K++  P P HW AA++ L+ L  TRDL ITY
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDE--NEEADDRLAGGYASMVGSLMYAAVGTRPDISYAVQTLSKYTACPRPVHWTAAKRVLRYLAGTRDLHITY 1259          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 239 bits (610), Expect = 5.160e-67
Identity = 140/361 (38.78%), Postives = 206/361 (57.06%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQ--VGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVF-RRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVTKT-SIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITYG 1077
            +P ++ EA  S+EWP+WK AIA+EM      G + +VE PK   ++G++ VF+ K + +G IE YK RLVAQGF QV GI ++E+ +P    ASIR++L++ A   WE  Q+DV  AYL  D+EEE+Y+  P    +  K+  V  LK+ + GL  +G  + KK   EL +    RS+ D CVF  R    V++      VDD  +A  TK       R++ +   + DLGE  + LG  +  DR+A TL+  Q  YI  +  RF +    S+   +  G  LS    P T  + E+M  IPYRE +G+LM+AA  TRP+I++A   L++F  NPG  HW AA++  + L  TR+  +T+G
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIA-GTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFG 1280          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 232 bits (591), Expect = 5.940e-66
Identity = 133/362 (36.74%), Postives = 209/362 (57.73%), Query Frame = 1
Query:    1 DPEPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQ--VGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSI--IPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITY 1074
            D +PT+  +A  S++   W +A+  E+D     GVW++V+  +    +G + VFK K D  G IE++K RLVA+GF Q +GI++ E+ SP   + S R++++++A    E  Q+DV  A+L  ++EEE+++  PE + ++ K+  V  LKK++ GL  A   W KKF   + +  F  +  D CV+ +++ G        YVDD+L+A++  +  +     L S   +K+LGEASY LG  I  DR  G L   Q  YI  + +RFG+   +   +P   G K L+K+  P+T+ E  EM  IPY  +VG+LM+A   TRP++SFA   L++F  NPG  HW A +K L+ L RT+D  + Y
Sbjct:  245 DNDPTSFKQATGSNDSDAWTQAMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVY 604          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 226 bits (577), Expect = 9.090e-66
Identity = 137/366 (37.43%), Postives = 200/366 (54.64%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRD--SRKQVGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIK----DLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVTKTSIIPFVVGGK-TLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITYGGE 1083
            EP T+ EA+AS EWPQW+ AI  E+      G W++ E+P    V+G+  VFK K D  G I KYK RLVAQGF Q+ G+ Y ++ +P    +SIR++ ++ A   WE  Q+DV  AYL  D+EEE++++ P  +      ++V  L K + GL  AG  W KK         F RS  D  VF R      +      VDDL +A A   DE   ++   S L +K    DLGE  + LG  I  DR   T++  Q  YI T+  RF +     +   +    +L+   SP T ++ ++M  I YRE +G+LM+AA  TRP++S+A   L++F  NPG  HW AA++ ++ L  T++  +TYGG+
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIA-ANSVDEMSHIK---SALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGD 390          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.530e-64
Identity = 133/368 (36.14%), Postives = 202/368 (54.89%), Query Frame = 1
Query:   10 PTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRD---------SRKQVGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGV--TKTSIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITYGG 1080
            P T  EA    +  +WK+AIA E+    V   W++V +P  +  +G R VF  K ++ G++ +YK RLVA+G+ Q  GI Y+E+ SP     S+R +L+   A G E  Q DVD A+L  ++EEE+Y+ELPE  R+             V +L +++ GL  A  +W +     L++  F+ + ADPCV+ R   G        YVDD+L+A+  K         +     IKDLG A + +G  I +D    TL   Q  Y +++ ++FG    K  + P   G + L+K+D PQT+E+  +M   PYR +VG+LM+ A  TRP+IS A   L++F +NPG  HW A  K ++ L +T+D+GI Y G
Sbjct:   66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 431          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 231 bits (589), Expect = 2.890e-64
Identity = 137/361 (37.95%), Postives = 203/361 (56.23%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQ--VGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVF-RRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVTKT-SIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITYG 1077
            +P ++ EA  S+EWP+W  AIA+EM      G + +VE PK   ++G++ VF+ K + +G IE YK RLVAQGF QV GI ++E+ +P    ASIR++L++ A   WE  Q+DV   YL  D+EEE+Y+  P    +  K+  V  LK+ + GL  +G  + KK   EL +    RS+ D C+F  R    V++      VDD  +A  TK       R++     + DLGE  + LG  +  DR+A TL+  Q  YI  +  RF +    S+   +  G  LS    P T  + E+M  IPYRE +G+LM+AA  TRP+I++A   L++F  NPG  HW AA++  + L  TR+  +T+G
Sbjct:  744 DPASLNEAMQSTEWPKWTEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIYMWQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCIFWLRNEEDVLILLIALSVDDSTIA-GTKAAVFWFKREISMHFEMSDLGEMHWILGIEVRRDRDARTLSLSQCAYIDMILARFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMKNPGRPHWEAAKRVFRYLAGTRERWLTFG 1103          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 230 bits (587), Expect = 6.180e-64
Identity = 139/362 (38.40%), Postives = 208/362 (57.46%), Query Frame = 1
Query:   16 TMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEA--DVEEEVYVELPE--AYRDSRKQVGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRI-LHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVT--KTSIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITYGG 1080
            T+ EA+   +WP+W  AI  E++   + G W++V+RP    V+G++ V + K D  G I+KYK RLVAQGF Q+ GI Y E+ +P    +SIR++L++ A  GW+ +  D + AYL +  D +E +Y+E P   A +D +  V  L+KA+ GL   G  W +   I L    F R+++D  VF  I  + + V     +VDD  +  ++     +  R +    P+ DLGE S+ LG  +  DR A TL+  QH YI ++  RF  T  K S IP +     L+KS  P +  ++  M +IPYRE +G+LM+AA  TRP+ISFA   LA+FS NPG THW A ++  + L  T++L + YGG
Sbjct:  965 TLEEARKRPDWPKWLAAIRAELESLKLNGTWELVDRPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAIDANNITVLAI--HVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIP-MDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGG 1323          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO)

HSP 1 Score: 230 bits (586), Expect = 8.600e-64
Identity = 137/360 (38.06%), Postives = 201/360 (55.83%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQ--VGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVT--KTSIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITY 1074
            +P T  +A +S E   W  A+  EMD      VW +VE P     +G R VFK K D +G IE++K RLVA+GF Q +GI Y E+ SP   + S+R++L+++A    E  Q+DV  A+L  D+EEEVY++ PE +  S  +  V  L K++ GL  A   W  KF   + +  F+ +  D C+++++  G  +     YVDD+L+AT  K    +  + L     +KD+GEASY +G  I  +R+ G L   Q  YI  + ERF +     S+ P V G K L+ S  P+ D E E M  IPY   VG+LM+A   TRP+I+FA   L ++  NPG  HW+AA+K ++ L  T+D  + Y
Sbjct: 1045 DPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKTKKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEGFLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDK-LALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMY 1402          
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO)

HSP 1 Score: 230 bits (586), Expect = 9.220e-64
Identity = 137/360 (38.06%), Postives = 201/360 (55.83%), Query Frame = 1
Query:    7 EPTTMGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQ--VGLLKKAMCGLVHAGLLW*KKFGIELEAKVFQRSQADPCVFRRILHGVVVXXXXXYVDDLLVATATKRDEEQAVRDLCSCLPIKDLGEASYYLGYHITWDRNAGTLTFDQHQYIQTMAERFGVT--KTSIIPFVVGGKTLSKSDSPQTDEEVEEMCQIPYREIVGALMWAATMTRPNISFAAH*LAKFSDNPGPTHWRAAQKALQNLWRTRDLGITY 1074
            +P T  +A +S E   W  A+  EMD      VW +VE P     +G R VFK K D +G IE++K RLVA+GF Q +GI Y E+ SP   + S+R++L+++A    E  Q+DV  A+L  D+EEEVY++ PE +  S  +  V  L K++ GL  A   W  KF   + +  F+ +  D C+++++  G  +     YVDD+L+AT  K    +  + L     +KD+GEASY +G  I  +R+ G L   Q  YI  + ERF +     S+ P V G K L+ S  P+ D E E M  IPY   VG+LM+A   TRP+I+FA   L ++  NPG  HW+AA+K ++ L  T+D  + Y
Sbjct: 1819 DPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKTKKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEGFLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDK-LALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRYQSNPGIDHWKAAKKVMRYLQGTKDYMLMY 2176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116576.1300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GP19_9APHY7.570e-6937.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY2.030e-6736.24Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401GN13_9APHY5.160e-6738.78Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A2P6SMQ0_ROSCH5.940e-6636.74Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A4Y9ZVS1_9AGAM9.090e-6637.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA2.530e-6436.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H6Z2_9APHY2.890e-6437.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A2R6PCF8_9APHY6.180e-6438.40Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A445FBE9_GLYSO8.600e-6438.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FAJ6_GLYSO9.220e-6438.06Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116576contigH-elongata_contig116576:271..1353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.3
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog102107.XP_008237389.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1083
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116576.1300.1prot_H-elongata_contig116576.1300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116576 289..756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929677.4906251-UTR-H-elongata_contig116576:270..2881622929677.4906251-UTR-H-elongata_contig116576:270..288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116576 271..288 +
1691679115.9193254-UTR-H-elongata_contig116576:270..2881691679115.9193254-UTR-H-elongata_contig116576:270..288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116576 271..288 +
1622929677.5240166-UTR-H-elongata_contig116576:756..13531622929677.5240166-UTR-H-elongata_contig116576:756..1353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116576 757..1353 +
1691679115.9364955-UTR-H-elongata_contig116576:756..13531691679115.9364955-UTR-H-elongata_contig116576:756..1353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116576 757..1353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929677.508729-CDS-H-elongata_contig116576:288..7561622929677.508729-CDS-H-elongata_contig116576:288..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116576 289..756 +
1691679115.928666-CDS-H-elongata_contig116576:288..7561691679115.928666-CDS-H-elongata_contig116576:288..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116576 289..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116576.1300.1

>prot_H-elongata_contig116576.1300.1 ID=prot_H-elongata_contig116576.1300.1|Name=mRNA_H-elongata_contig116576.1300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSEWPQWKRAIAREMDGQTVRGVWQVVERPKEKTVLGTRVVFKR
KIDKDGRIEKYKCRLVAQGFRQVKGIHYDESSSPTPAQASIRMVLSMIAA
LGWEARQLDVDMAYLEADVEEEVYVELPEAYRDSRKQVGLLKKAMCGLVH
AGLLW*
back to top

mRNA from alignment at H-elongata_contig116576:271..1353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116576.1300.1 ID=mRNA_H-elongata_contig116576.1300.1|Name=mRNA_H-elongata_contig116576.1300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig116576:271..1353+ (Himanthalia elongata Himel1 dioecious)
GACCCAGAGCCGACCACCATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCC GCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGTTCGAG GCGTGTGGCAGGTGGTGGAGCGCCCAAAAGAGAAGACGGTGTTGGGCACG AGAGTAGTTTTTAAGCGCAAAATCGACAAGGATGGAAGGATAGAGAAGTA TAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACT ACGATGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTA CTCAGTATGATCGCGGCTCTTGGCTGGGAGGCGCGGCAGCTGGACGTCGA CATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGGTCTACGTTGAGCTCC CGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCA ATGTGCGGACTCGTCCATGCTGGGCTGCTGTGGTAAAAAAAGTTCGGGAT CGAGCTCGAGGCGAAGGTTTTCCAGAGATCTCAAGCTGACCCATGTGTGT TCCGGCGAATTCTCCACGGGGTAGTGGTAGTCGTCATTGTGGTCTACGTC GATGACCTGCTGGTTGCTACTGCGACGAAACGTGACGAGGAGCAAGCGGT GAGGGACCTGTGCTCTTGTTTACCCATCAAGGATCTGGGGGAGGCTTCGT ATTACCTGGGATACCACATCACGTGGGACCGGAACGCCGGGACACTGACG TTCGACCAGCATCAGTATATACAGACTATGGCGGAACGTTTTGGCGTGAC GAAGACCAGCATCATCCCGTTCGTGGTAGGAGGAAAAACCCTTTCGAAAT CAGACAGTCCGCAAACGGACGAAGAGGTTGAAGAAATGTGCCAGATTCCC TACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGACC CAATATTTCATTCGCTGCGCACTAACTGGCGAAATTCAGCGACAACCCGG GACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAAAATTTATGGCGC ACTCGGGACCTCGGGATCACCTACGGAGGGGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig116576:271..1353+

>mRNA_H-elongata_contig116576.1300.1 ID=mRNA_H-elongata_contig116576.1300.1|Name=mRNA_H-elongata_contig116576.1300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig116576:271..1353+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTGTTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGAGAAGACGGTGTTGGGCACGAGAGTAGTTTTTAAGCGC
AAAATCGACAAGGATGGAAGGATAGAGAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGATGAATCCTCCTCTC
CGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGTATGATCGCGGCT
CTTGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGC
CGATGTGGAGGAGGAGGTCTACGTTGAGCTCCCGGAGGCATACCGTGACT
CCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTGCGGACTCGTCCAT
GCTGGGCTGCTGTGGTAAATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCC
GCAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAACTGTTCGAG
GCGTGTGGCAGGTGGTGGAGCGCCCAAAAGAGAAGACGGTGTTGGGCACG
AGAGTAGTTTTTAAGCGCAAAATCGACAAGGATGGAAGGATAGAGAAGTA
TAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACT
ACGATGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTA
CTCAGTATGATCGCGGCTCTTGGCTGGGAGGCGCGGCAGCTGGACGTCGA
CATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGGTCTACGTTGAGCTCC
CGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCA
ATGTGCGGACTCGTCCATGCTGGGCTGCTGTGGTAA
back to top