mRNA_H-elongata_contig115542.1228.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115542.1228.1
Unique NamemRNA_H-elongata_contig115542.1228.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 237 bits (604), Expect = 3.060e-68
Identity = 131/334 (39.22%), Postives = 202/334 (60.48%), Query Frame = 1
Query:    4 WKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQ--VSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTSI--IPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            W +A+  E+D     GVW++V+  +    +G + VFK K D  G IE++K RLV +GF Q +GI++ E+ SP   + S R++++++A    E  Q+DV  A+L  ++EEEI++   E + ++ K+  V   KK++YGL  A   W KKF   +++ GF  +  D CV+ +++ G   + +++YVDD+L+AS+  +  K     L S F +K+LGEASY LG  I RDR  G+L   Q  YI  + +RFG+   +   +P   G K L+K+  P+T+ E  EM  IPY  +VG+LM+A   TRPD+SFA   L++F  NPG  HW A +KVL+YL
Sbjct:  263 WTQAMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYL 594          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 231 bits (590), Expect = 3.220e-68
Identity = 127/334 (38.02%), Postives = 197/334 (58.98%), Query Frame = 1
Query:    1 QWKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQ--VSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTS-IIPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            +W  A+  E+       VW++VE P+G   +G + VFK K D +G IE+YK RLV +GF Q +GI Y+E+ SP   + S+R++++++A    E  Q+DV  A+L  ++EEE+++   E +    K+  V   KK++YGL  A   W  KF   + + GF+ +  D C++ ++  G   + +++YVDD+L+AS+      +    L   F +KD+GEASY +G  I RDR+ G+L   Q  YI+ + ERFG+ K S  I  +  G   S    PQ + E + M +IPY   VG+L++A T TRPDISFA   L ++  NPG  HW+A +KV++YL
Sbjct:   31 KWIDAMNDELKSMDQNKVWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYL 363          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A438CL20_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CL20_VITVI)

HSP 1 Score: 241 bits (614), Expect = 3.760e-68
Identity = 135/334 (40.42%), Postives = 199/334 (59.58%), Query Frame = 1
Query:    4 WKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGK--KAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGV--TKTSIIPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            WK A+  EM+     GVW +VE P G   +G + VFK K D  G+IE+YK RLVV+G+ Q +GI ++E+ SP   + S R++++++A    E  Q+DV  A+L  D++EE+Y+E    + +  K+  + K  K++YGL  A   W  KF   +   GF+ +  D C++ R+  G   + +V+YVDD+L+AS       +    L + F +KDLGEASY LG  I RDR  G+L   Q  YI+ + +RF +   K++  P V G K  SK+  PQ D E EEM+ IPY  +VG+LM+A   TRPDI+F    L ++  NPG  HW+A +KVL+YL
Sbjct:  788 WKEAMDDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKRDSSGKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAIVAHFDLELHQMDVKTAFLNGDLDEEVYMEQPIGFVEVGKEDLVCKLNKSIYGLKQASRQWYLKFDKIITQNGFKENTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDPDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRAYIERILKRFNMHNCKSTKAPIVKGDK-FSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNPGSQHWKAAKKVLRYL 1119          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 237 bits (604), Expect = 4.360e-68
Identity = 134/334 (40.12%), Postives = 199/334 (59.58%), Query Frame = 1
Query:    1 QWKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQ--VSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTSIIPS-VVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            +W  A+  E+       VW +V+ P G   +G + VFK K D  G+IE+YK RLV +GF Q +G+ Y+E+ SP  ++ S R+V++++A    E  Q+DV  A+L  D+ E++Y+   + ++ S K+  V   KK++YGL  A   W  KF   + + GF+ +  D C++ +I  G  ++ +V+YVDD+L+AS      ++  R L   F +KDLGEAS+ LG  I RDR+ GIL   Q  YI  + ERF ++  +   + VV G  LSK   PQ D E  EM++IPY   VG+LM+A   TRPDI+FA   L +F  +PG  HWRA +KVL+YL
Sbjct:  292 KWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYL 624          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 227 bits (579), Expect = 1.010e-67
Identity = 123/334 (36.83%), Postives = 195/334 (58.38%), Query Frame = 1
Query:    1 QWKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQ--VSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTS-IIPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            +W  A+  E++      VW++VE   G   +G + V+K K+D +G +E++K RLV +G+ Q +GI Y+E+ SP   + S+R+V++++A    E  Q+DV  A+L  ++ E++Y+   E ++   K+  V   KK+ YGL  A   W  KF   +   GF  +Q D C + + + G    ++V+YVDD+L+AS +     ++ R L S F +KDLGEASY +G  I RDR +G L   Q  YI  +  R+ +   S ++  VV G        P+T+ E E+MR IPY  +VG++M+A   TRPDI++ A  L ++  NPG  HW+A +KVL+YL
Sbjct:   50 EWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYL 382          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A251UJK4_HELAN (Putative zinc finger, CCHC-type n=7 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UJK4_HELAN)

HSP 1 Score: 239 bits (610), Expect = 1.350e-67
Identity = 128/335 (38.21%), Postives = 201/335 (60.00%), Query Frame = 1
Query:    1 QWKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQ--VSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVT--KTSIIPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            +W +A+  E++      VW +VE P G   +G + VFK K+D +G +E+YK RLV +G+ Q +GI Y+E+ SP   + S+R+V++++A    E  Q+DV  A+L  D++E++Y++  E ++   ++  V   KK++YGL  A   W  KF   +  +GF ++Q D C + + + G    ++V+YVDD+L+AS +     ++ R L   F +KDLG+ASY +G  I RDR+ GIL   Q  YI  +  R+ +   K S+ P VV G        P T+ E E+M QIPY  +VG+LM+A   TRPDI++ A  L ++  NPG  HW+A +KVL+YL
Sbjct:  809 EWNKAMIDELESMKKNDVWDLVELPNGVKPVGCKWVFKTKLDPNGNVERYKARLVAKGYTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLDEDVYMKQPEGFKPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKRQGFMKNQVDQCTYLK-MSGSDFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGDASYVIGIEIHRDRHKGILGLSQKAYIDRVLTRYNMQQCKPSVAP-VVKGDVFGSFQCPTTEVEKEQMSQIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYL 1141          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A438E9F8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E9F8_VITVI)

HSP 1 Score: 229 bits (584), Expect = 2.420e-67
Identity = 132/334 (39.52%), Postives = 192/334 (57.49%), Query Frame = 1
Query:    4 WKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGK--KAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTSI--IPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            WK A+  EM+     GVW +VE P G   +G + VFK K D  GRIE+YK RLVV+G+ Q +GI ++E+ SP   + S R++LS++A    E  Q+DV  ++L  D++E +Y+E    + +  K+  + K  K++YGL  A   W  KF   +   GF+++  D C++ R+  G   + +V+YVDD+L+AS       +    L + F +KDLGEASY L   I RDR  G+L   Q  YI+ + +RF +   S   +P V   K  SK+  PQ D E EEMR IPY  +VG+LM+A   T PDI+F    L ++  NP   HW+A + VL YL
Sbjct:   32 WKEAMDDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKRDSSGRIERYKTRLVVKGYSQREGIDFKETFSPVSIKDSFRVILSIVAHFDLELHQMDVKTSFLNGDLDENVYMEQPTGFTEVGKEHLVCKLNKSIYGLKQASRQWYLKFDRIITQNGFKKNTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDSDLLIETKHMLSTHFDMKDLGEASYVLSIKIFRDRANGVLKLSQRTYIKKILKRFNMHNCSSTKVPIVKDDK-FSKAQCPQNDDEREEMRTIPYLSLVGSLMYAQVCTHPDIAFVVGMLGRYLSNPRIEHWKAAKNVLMYL 363          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 238 bits (608), Expect = 2.610e-67
Identity = 131/333 (39.34%), Postives = 197/333 (59.16%), Query Frame = 1
Query:    4 WKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAY--RDSRKQVSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTS-IIPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            W  A+  EM+   + GVW +VE P G   +G + VFK K D  G IE+YK RLV +GF Q +GI Y E+ SP   + S+R++L+++A    E +Q+DV  A+L  D+EEE+Y++  E +   D  + V   KK++YGL  A   W  KF   +++ GF  +  D C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+GEASY +G  I RDR  GIL   Q  YI  + ERF +   S  +  +V G   + +  P+ D E E+M+ IPY   VG+LM+A   TRPDI+FA   L ++  +PG  HWRA +KV++YL
Sbjct:  701 WYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCSPSVAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYL 1032          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 239 bits (609), Expect = 2.700e-67
Identity = 136/334 (40.72%), Postives = 199/334 (59.58%), Query Frame = 1
Query:    1 QWKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQ--VSLGKKAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTSIIPS-VVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            +W  A+  E+       VW +V+ P G   +G + VFK K D  G+IE+YK RLV +GF Q +GI Y+E+ SP  ++ S R+V++++A   +E  Q+DV  A+L  D+ E++Y+     ++ S K+  V   KK++YGL  A   W  KF   + + GF+ +  D C++ +I  G  ++ +V+YVDD+L+AS      ++  R L   F +KDLGEAS+ LG  I RDR+ GIL   Q  YI  + ERF ++  S   + VV G  LSK   PQ D E  EM++IPY   VG+LM+A   TRPDI+FA   L +F  +PG  HWRA +KVL+YL
Sbjct:  494 KWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGIDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYL 826          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 235 bits (600), Expect = 3.260e-67
Identity = 127/333 (38.14%), Postives = 193/333 (57.96%), Query Frame = 1
Query:    4 WKRAIAREMDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGK--KAMYGLVHAGLLW*KKFGIELAAKGFQRSQADPCVFRRILHGVVVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLGCHITRDRNTGILTFDQHQYIQTMAERFGVTKTS-IIPSVVGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAVQKVLQYL 993
            W  A+  EM+  ++  VW +V  P G   +G + VFK K D  G IE+YK RLV +GF Q +GI Y E+ SP   + S R++++++A   +E  Q+DV  A+L   +EEE+Y++  E +  S  +  + K  +++YGL  A   W  KF   + + GF+ +  D C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+GEASY +G  I RDRN GIL   Q  YI  + ERF +   S  +  +V G     S  PQ D E E M+ IPY   VG+LM+A   TRPDI++A   L ++  NPG  HW+A +KV++YL
Sbjct:  448 WHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYL 779          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6SMQ0_ROSCH3.060e-6839.22Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6S2B9_ROSCH3.220e-6838.02Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A438CL20_VITVI3.760e-6840.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GV19_FAGSY4.360e-6840.12Integrase catalytic domain-containing protein n=6 ... [more]
A0A5N6NCI1_9ASTR1.010e-6736.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A251UJK4_HELAN1.350e-6738.21Putative zinc finger, CCHC-type n=7 Tax=Helianthus... [more]
A0A438E9F8_VITVI2.420e-6739.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9EM55_FAGSY2.610e-6739.34Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HDZ1_FAGSY2.700e-6740.72RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A2K3LA50_TRIPR3.260e-6738.14Putative retrotransposon Ty1-copia subclass protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115542contigH-elongata_contig115542:1087..2079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.8
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog4081.Solyc03g062850.1.1
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size993
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115542.1228.1prot_H-elongata_contig115542.1228.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115542 1114..1521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.5656207-UTR-H-elongata_contig115542:1086..11131622929669.5656207-UTR-H-elongata_contig115542:1086..1113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115542 1087..1113 +
1691679113.0883508-UTR-H-elongata_contig115542:1086..11131691679113.0883508-UTR-H-elongata_contig115542:1086..1113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115542 1087..1113 +
1622929669.59875-UTR-H-elongata_contig115542:1521..20791622929669.59875-UTR-H-elongata_contig115542:1521..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115542 1522..2079 +
1691679113.1101274-UTR-H-elongata_contig115542:1521..20791691679113.1101274-UTR-H-elongata_contig115542:1521..2079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115542 1522..2079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.5817277-CDS-H-elongata_contig115542:1113..15211622929669.5817277-CDS-H-elongata_contig115542:1113..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115542 1114..1521 +
1691679113.100438-CDS-H-elongata_contig115542:1113..15211691679113.100438-CDS-H-elongata_contig115542:1113..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115542 1114..1521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115542.1228.1

>prot_H-elongata_contig115542.1228.1 ID=prot_H-elongata_contig115542.1228.1|Name=mRNA_H-elongata_contig115542.1228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGF
RQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVE
EEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW*
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mRNA from alignment at H-elongata_contig115542:1087..2079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115542.1228.1 ID=mRNA_H-elongata_contig115542.1228.1|Name=mRNA_H-elongata_contig115542.1228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=993bp|location=Sequence derived from alignment at H-elongata_contig115542:1087..2079+ (Himanthalia elongata Himel1 dioecious)
CAATGGAAAAGGGCGATCGCGCGCGAGATGGATGGGCAAATTGCTCGAGG AGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGA GAGTTGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCGAAAAGTAT AAATGTCGTCTCGTGGTGCAGGGTTTCAGGCAGGTAAAAGGTATACACTA CGAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTAC TCAGCATGATCGCGGCTCTCGGGTGGGAGGCGCGGCAGCTGGACGTCGAC ATGGCCTACCTGGAGGCTGATGTGGAGGAGGAGATCTACGTTGAGCTCCT GGAGGCATACCGTGACTCCAGGAAGCAAGTCAGCCTAGGAAAGAAGGCAA TGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAAAAAAAGTTCGGGATC GAGCTCGCGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCGTGTT CCGGCGAATTCTCCACGGGGTAGTGGTTGTCGTCATTGTGGTCTACGTCG ACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGAAGCAAGCGGTG AGGGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCGTA TTACCTGGGATGCCACATCACGCGGGACCGGAACACCGGGATACTGACGT TCGACCAGCATCAGTACATACAGACTATGGCAGAACGTTTTGGCGTGACG AAGACCAGCATCATTCCGTCCGTGGTAGGAGGGAAGGCCCTTTCAAAATC GGACAGCCCGCAAACGGACGCCGAGGTTGAAGAAATGCGCCAGATTCCCT ACCGAGAAATTGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCC GACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGGG ACCGACACACTGGAGGGCAGTCCAGAAAGTGCTACAATATTTA
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Coding sequence (CDS) from alignment at H-elongata_contig115542:1087..2079+

>mRNA_H-elongata_contig115542.1228.1 ID=mRNA_H-elongata_contig115542.1228.1|Name=mRNA_H-elongata_contig115542.1228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig115542:1087..2079+ (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAATTGCTCGAGGAGTGTGGCAGGTGGTGGAGCGCCCAAA
AGGGAAGACGGTGTTGGGCACGAGAGTTGTTTTCAAGCGAAAAATCGACA
AGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTGGTGCAGGGTTTC
AGGCAGGTAAAAGGTATACACTACGAGGAATCCTCCTCTCCGACTCCTGC
GCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGGTGGG
AGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCTGATGTGGAG
GAGGAGATCTACGTTGAGCTCCTGGAGGCATACCGTGACTCCAGGAAGCA
AGTCAGCCTAGGAAAGAAGGCAATGTACGGACTCGTCCACGCCGGGCTGC
TGTGGTAAATGGATGGGCAAATTGCTCGAGGAGTGTGGCAGGTGGTGGAG
CGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTTGTTTTCAAGCGAAA
AATCGACAAGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTGGTGC
AGGGTTTCAGGCAGGTAAAAGGTATACACTACGAGGAATCCTCCTCTCCG
ACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCT
CGGGTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCTG
ATGTGGAGGAGGAGATCTACGTTGAGCTCCTGGAGGCATACCGTGACTCC
AGGAAGCAAGTCAGCCTAGGAAAGAAGGCAATGTACGGACTCGTCCACGC
CGGGCTGCTGTGGTAA
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