prot_H-elongata_contig115542.1228.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig115542.1228.1
Unique Nameprot_H-elongata_contig115542.1228.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 106 bits (265), Expect = 2.090e-26
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAY--------RDSRKQVSLGKKAMYGLVHAGLLW 135
            W +V+RP+GKTV+G+R VF+ K+  DG +E+ K RLV +GF Q+ G HY E+ +     +SIR V+++ A    E  QLD   AYL  ++EEEIY+E+ +          +D   +VS  +KA+YGL  +G +W
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 111 bits (277), Expect = 9.850e-26
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW 135
            GV++ V RP+ + ++G++ VFK K   DG++EKYK RLV QGF QV+GI Y E+ +P     SIR++L++ A   WE  Q+DV  A+L  ++EEEIY+++   ++ S   V   KKA+YGL  A   W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A5BDW5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=16 Tax=Vitis vinifera TaxID=29760 RepID=A5BDW5_VITVI)

HSP 1 Score: 101 bits (252), Expect = 1.040e-24
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 0
Query:    1 MDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAY--RDSRKQVSLGKKAMYGLVHAGLLW 135
            M       VW +V+ P G   +G + VFK K D  G IE+YK RLV +GF Q +GI Y E+ SP   + S+R++L+++A    E +Q+DV  A+L  ++EEE+Y++  E +   D  + VS  KK++YGL  A   W
Sbjct:    5 MSSMKCNDVWDLVDLPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQW 141          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A226CZD0_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226CZD0_FOLCA)

HSP 1 Score: 107 bits (268), Expect = 1.550e-24
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 0
Query:    1 MDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW 135
            M      G W++V+RP GK VL  R V+K K + +G IEK+K RLVV+GF QVKG+ Y E+ +P     +IR +LS+ AA   +  Q D+  AYL ++++EE+Y+E  E Y      V L  K +YGL  +G  W
Sbjct:  256 MRSHSENGTWRLVKRPVGKKVLKNRWVYKIKHNPNGEIEKFKARLVVKGFNQVKGVDYTETFAPVSRYETIRTLLSVAAARKLKLVQFDIGTAYLNSELKEEVYMEQAEGYEIGSDMVYLLDKTLYGLPQSGRAW 390          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 107 bits (268), Expect = 1.570e-24
Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRK-QVSLGKKAMYGLVHAGLLW 135
            W+VV+ P  K  +G + ++K K + DG IE+YK RLV QGF Q++GI Y+E  SP     S+R  L+++ A  WE  Q+DV+ A+L  D+EEE+Y++L E ++ + K +V   +K++YGL  A   W
Sbjct:  582 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5)

HSP 1 Score: 105 bits (262), Expect = 1.890e-24
Identity = 50/128 (39.06%), Postives = 80/128 (62.50%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW 135
            G W++V+ P+GK ++G + VF  K   DG +E+YK RLV +GF Q  G+ Y+E+ +P     S+R++LS+ AA  W   QLDV  A+L  D+EEE+++ L   + ++  +V   KK++YGL  +   W
Sbjct:   14 GTWKLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQSPRAW 141          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 107 bits (266), Expect = 2.500e-24
Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRK-QVSLGKKAMYGLVHAGLLW 135
            W+VV+ P  K  +G + ++K K + DG IE+YK RLV QGF Q++GI Y+E+ SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++L E ++ + K +V   +K++YGL  A   W
Sbjct:  113 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A226DCE7_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DCE7_FOLCA)

HSP 1 Score: 107 bits (266), Expect = 3.020e-24
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 0
Query:    1 MDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW 135
            M      G W++V+RP GK VL  R V+K K + +G IEK+K RLVV+GF QVKG+ Y E+ +P     +IR +LS+ AA   +  Q D+  AYL ++++EE+Y+E  E Y      V +  K +YGL  +G  W
Sbjct:  846 MRSHSENGTWRLVKRPVGKKVLKNRWVYKIKHNPNGEIEKFKARLVVKGFNQVKGVDYTETFAPVSRYETIRTLLSVAAARKLKLVQFDIGTAYLNSELKEEVYMEQAEGYEIGSDMVYILDKTLYGLPQSGRAW 980          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 106 bits (265), Expect = 4.030e-24
Identity = 51/126 (40.48%), Postives = 81/126 (64.29%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW 135
            W++VE PKG+ V+G+R V+K K+D+DGR  +YK RLV QGF Q  GI + ++ +P    ++IR+++S+  AL      +D+  AYL   ++EE+Y++    Y D   +V L ++A+YGL  AG  W
Sbjct:  725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAW 850          
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 106 bits (264), Expect = 5.520e-24
Identity = 53/127 (41.73%), Postives = 81/127 (63.78%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELLEAYRDSRK-QVSLGKKAMYGLVHAGLLW 135
            W+VV+ P  K  +G + ++K K + DG IE+YK RLV QGF Q++GI Y+E  SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++L E ++ + K +V   +K++YGL  A   W
Sbjct:  836 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115542.1228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9Y7J8_LYGHE2.090e-2641.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK9.850e-2643.75Integrase catalytic domain-containing protein (Fra... [more]
A5BDW5_VITVI1.040e-2439.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A226CZD0_FOLCA1.550e-2442.22Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A438E4T4_VITVI1.570e-2441.73Retrovirus-related Pol polyprotein from transposon... [more]
UPI00192EECC51.890e-2439.06uncharacterized protein LOC120294339 n=1 Tax=Eucal... [more]
A0A438GNV2_VITVI2.500e-2441.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A226DCE7_FOLCA3.020e-2441.48Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A177TV96_9BASI4.030e-2440.48Integrase catalytic domain-containing protein n=1 ... [more]
A5BCC7_VITVI5.520e-2441.73Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..135
e-value: 1.7E-30
score: 106.5
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..128
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115542contigH-elongata_contig115542:1114..1521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115542.1228.1mRNA_H-elongata_contig115542.1228.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig115542 1087..2079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig115542.1228.1 ID=prot_H-elongata_contig115542.1228.1|Name=mRNA_H-elongata_contig115542.1228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MDGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVVQGF
RQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVE
EEIYVELLEAYRDSRKQVSLGKKAMYGLVHAGLLW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like