mRNA_H-fluviatilis_contig100984.267.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100984.267.1
Unique NamemRNA_H-fluviatilis_contig100984.267.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100984.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100984contigH-fluviatilis_contig100984:22..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.8821476-CDS-H-fluviatilis_contig100984:21..1681622929027.8821476-CDS-H-fluviatilis_contig100984:21..168Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100984 22..168 +
1691135155.4364123-CDS-H-fluviatilis_contig100984:21..1681691135155.4364123-CDS-H-fluviatilis_contig100984:21..168Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100984 22..168 +
1622929027.8939195-CDS-H-fluviatilis_contig100984:236..3441622929027.8939195-CDS-H-fluviatilis_contig100984:236..344Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100984 237..344 +
1691135155.4474127-CDS-H-fluviatilis_contig100984:236..3441691135155.4474127-CDS-H-fluviatilis_contig100984:236..344Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100984 237..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100984.267.1prot_H-fluviatilis_contig100984.267.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100984 22..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100984.267.1

>prot_H-fluviatilis_contig100984.267.1 ID=prot_H-fluviatilis_contig100984.267.1|Name=mRNA_H-fluviatilis_contig100984.267.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=85bp
CAHSVKESATPAAAVTAEQFLEASETGDLATLLRGLAQYPPVDINAVDKA
GCTALHTAVWRKDARMVSLLLAQPPPNAIRVDARH
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mRNA from alignment at H-fluviatilis_contig100984:22..346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100984.267.1 ID=mRNA_H-fluviatilis_contig100984.267.1|Name=mRNA_H-fluviatilis_contig100984.267.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=325bp|location=Sequence derived from alignment at H-fluviatilis_contig100984:22..346+ (Heribaudiella fluviatilis SAG_13_90)
TGCGCACATAGTGTCAAAGAGAGCGCAACGCCAGCAGCTGCGGTGACGGC
GGAGCAATTTTTAGAAGCATCCGAGACAGGCGATTTGGCGACGCTGCTGC
GCGGGTTAGCACAATACCCACCTGTCGACATCAACGCTGTTGATAAGGTG
AATCTTTGGTGTTGCTGGTGTTTCTGTTTGCCGTGCGCGTGACGTGAGTG
GTTCGTCGTTGGCAGGCTGGCTGCACGGCGTTGCACACGGCAGTGTGGAG
AAAGGACGCGCGGATGGTTTCACTATTGCTGGCACAGCCACCGCCCAACG
CGATTCGTGTCGATGCACGCCACAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100984:22..346+

>mRNA_H-fluviatilis_contig100984.267.1 ID=mRNA_H-fluviatilis_contig100984.267.1|Name=mRNA_H-fluviatilis_contig100984.267.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=510bp|location=Sequence derived from alignment at H-fluviatilis_contig100984:22..346+ (Heribaudiella fluviatilis SAG_13_90)
TGCGCACATAGTGTCAAAGAGAGCGCAACGCCAGCAGCTGCGGTGACGGC
GGAGCAATTTTTAGAAGCATCCGAGACAGGCGATTTGGCGACGCTGCTGC
GCGGGTTAGCACAATACCCACCTGTCGACATCAACGCTGTTGATAAGTGC
GCACATAGTGTCAAAGAGAGCGCAACGCCAGCAGCTGCGGTGACGGCGGA
GCAATTTTTAGAAGCATCCGAGACAGGCGATTTGGCGACGCTGCTGCGCG
GGTTAGCACAATACCCACCTGTCGACATCAACGCTGTTGATAAGGCTGGC
TGCACGGCGTTGCACACGGCAGTGTGGAGAAAGGACGCGCGGATGGTTTC
ACTATTGCTGGCACAGCCACCGCCCAACGCGATTCGTGTCGATGCACGCC
ACGCTGGCTGCACGGCGTTGCACACGGCAGTGTGGAGAAAGGACGCGCGG
ATGGTTTCACTATTGCTGGCACAGCCACCGCCCAACGCGATTCGTGTCGA
TGCACGCCAC
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