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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.9 |
| Seed ortholog evalue | 1.2e-11 |
| Seed eggNOG ortholog | 4792.ETI31938 |
| EggNOG free text desc. | TRAF-type zinc finger |
| EggNOG OGs | 3QCWH@4776,COG0666@1,KOG0297@1,KOG0297@2759,KOG0502@2759,KOG0504@2759 |
| COG Functional cat. | T |
| Best tax level | Peronosporales |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 300 |
| Cds size | 300 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.5130649-CDS-H-fluviatilis_contig100046:228..393 | 1622928996.5130649-CDS-H-fluviatilis_contig100046:228..393 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100046 229..393 - |
| 1691135143.875163-CDS-H-fluviatilis_contig100046:228..393 | 1691135143.875163-CDS-H-fluviatilis_contig100046:228..393 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100046 229..393 - |
| 1622928996.5293324-CDS-H-fluviatilis_contig100046:603..738 | 1622928996.5293324-CDS-H-fluviatilis_contig100046:603..738 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100046 604..738 - |
| 1691135143.886819-CDS-H-fluviatilis_contig100046:603..738 | 1691135143.886819-CDS-H-fluviatilis_contig100046:603..738 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100046 604..738 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100046.71.1 >prot_H-fluviatilis_contig100046.71.1 ID=prot_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=100bp
CPLTSVRCRLGCGANMWLKMRTEHESLLCSELTVTCKWGCAEAIKGVFLP
LPTECSTVRGFRQCGNRCGQTVPVADMKTHYAEACPHRFVPCGAGCGYKI back to topmRNA from alignment at H-fluviatilis_contig100046:229..738- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig100046.71.1 ID=mRNA_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=510bp|location=Sequence derived from alignment at H-fluviatilis_contig100046:229..738- (Heribaudiella fluviatilis SAG_13_90)
TGCCCGCTAACGAGCGTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTG
GCTGAAGATGCGGACGGAACATGAGAGTTTACTGTGCAGCGAGCTGACAG
TGACCTGCAAATGGGGTTGTGCGGAAGCAATAAAGGTGCAGCTTCGCCGT
TGCCCTCGCTTCCGCTTGGTCGGTCCACCTCACCCTGACTGACCATCCGA
ACACAACGAAATCGACTGAACTTAACTTCAGTCCTTAAGAGTATAGCACA
TGGTACTGGAGAAAGGTAAAGAGCTGTGACAACGCTTAGGAGTCTCTCTC
CTGCAATGTACTTTGCGCAGAAATCCTCGCAAAGTTCTGCGGAAGGGTGT
GTTTCTCCCTCTTCCAACAGAATGCTCCACCGTCCGCGGCTTCAGGCAAT
GCGGTAACCGCTGCGGACAGACGGTACCCGTGGCAGATATGAAGACCCAC
TACGCAGAGGCGTGCCCACATCGCTTCGTGCCTTGTGGGGCCGGGTGCGG
TTACAAGATA back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig100046:229..738- >mRNA_H-fluviatilis_contig100046.71.1 ID=mRNA_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=600bp|location=Sequence derived from alignment at H-fluviatilis_contig100046:229..738- (Heribaudiella fluviatilis SAG_13_90)
TGCCCGCTAACGAGCGTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTG
GCTGAAGATGCGGACGGAACATGAGAGTTTACTGTGCAGCGAGCTGACAG
TGACCTGCAAATGGGGTTGTGCGGAAGCAATAAAGTGCCCGCTAACGAGC
GTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTGGCTGAAGATGCGGAC
GGAACATGAGAGTTTACTGTGCAGCGAGCTGACAGTGACCTGCAAATGGG
GTTGTGCGGAAGCAATAAAGGGTGTGTTTCTCCCTCTTCCAACAGAATGC
TCCACCGTCCGCGGCTTCAGGCAATGCGGTAACCGCTGCGGACAGACGGT
ACCCGTGGCAGATATGAAGACCCACTACGCAGAGGCGTGCCCACATCGCT
TCGTGCCTTGTGGGGCCGGGTGCGGTTACAAGATAGGTGTGTTTCTCCCT
CTTCCAACAGAATGCTCCACCGTCCGCGGCTTCAGGCAATGCGGTAACCG
CTGCGGACAGACGGTACCCGTGGCAGATATGAAGACCCACTACGCAGAGG
CGTGCCCACATCGCTTCGTGCCTTGTGGGGCCGGGTGCGGTTACAAGATA back to top
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