mRNA_H-fluviatilis_contig100046.71.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	75.9
Seed ortholog evalue	1.2e-11
Seed eggNOG ortholog	4792.ETI31938
EggNOG free text desc.	TRAF-type zinc finger
EggNOG OGs	3QCWH@4776,COG0666@1,KOG0297@1,KOG0297@2759,KOG0502@2759,KOG0504@2759
COG Functional cat.	T
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	300
Cds size	300
Stop	0
Start	0

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-fluviatilis_contig100046:229..738-
coding sequence from alignment at H-fluviatilis_contig100046:229..738-

protein sequence of mRNA_H-fluviatilis_contig100046.71.1

>prot_H-fluviatilis_contig100046.71.1 ID=prot_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=100bp
CPLTSVRCRLGCGANMWLKMRTEHESLLCSELTVTCKWGCAEAIKGVFLP
LPTECSTVRGFRQCGNRCGQTVPVADMKTHYAEACPHRFVPCGAGCGYKI

mRNA from alignment at H-fluviatilis_contig100046:229..738-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-fluviatilis_contig100046.71.1 ID=mRNA_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=510bp|location=Sequence derived from alignment at H-fluviatilis_contig100046:229..738- (Heribaudiella fluviatilis SAG_13_90)
TGCCCGCTAACGAGCGTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTG
GCTGAAGATGCGGACGGAACATGAGAGTTTACTGTGCAGCGAGCTGACAG
TGACCTGCAAATGGGGTTGTGCGGAAGCAATAAAGGTGCAGCTTCGCCGT
TGCCCTCGCTTCCGCTTGGTCGGTCCACCTCACCCTGACTGACCATCCGA
ACACAACGAAATCGACTGAACTTAACTTCAGTCCTTAAGAGTATAGCACA
TGGTACTGGAGAAAGGTAAAGAGCTGTGACAACGCTTAGGAGTCTCTCTC
CTGCAATGTACTTTGCGCAGAAATCCTCGCAAAGTTCTGCGGAAGGGTGT
GTTTCTCCCTCTTCCAACAGAATGCTCCACCGTCCGCGGCTTCAGGCAAT
GCGGTAACCGCTGCGGACAGACGGTACCCGTGGCAGATATGAAGACCCAC
TACGCAGAGGCGTGCCCACATCGCTTCGTGCCTTGTGGGGCCGGGTGCGG
TTACAAGATA

Coding sequence (CDS) from alignment at H-fluviatilis_contig100046:229..738-

>mRNA_H-fluviatilis_contig100046.71.1 ID=mRNA_H-fluviatilis_contig100046.71.1|Name=mRNA_H-fluviatilis_contig100046.71.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=600bp|location=Sequence derived from alignment at H-fluviatilis_contig100046:229..738- (Heribaudiella fluviatilis SAG_13_90)
TGCCCGCTAACGAGCGTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTG
GCTGAAGATGCGGACGGAACATGAGAGTTTACTGTGCAGCGAGCTGACAG
TGACCTGCAAATGGGGTTGTGCGGAAGCAATAAAGTGCCCGCTAACGAGC
GTGCGTTGCCGTCTGGGTTGCGGAGCGAACATGTGGCTGAAGATGCGGAC
GGAACATGAGAGTTTACTGTGCAGCGAGCTGACAGTGACCTGCAAATGGG
GTTGTGCGGAAGCAATAAAGGGTGTGTTTCTCCCTCTTCCAACAGAATGC
TCCACCGTCCGCGGCTTCAGGCAATGCGGTAACCGCTGCGGACAGACGGT
ACCCGTGGCAGATATGAAGACCCACTACGCAGAGGCGTGCCCACATCGCT
TCGTGCCTTGTGGGGCCGGGTGCGGTTACAAGATAGGTGTGTTTCTCCCT
CTTCCAACAGAATGCTCCACCGTCCGCGGCTTCAGGCAATGCGGTAACCG
CTGCGGACAGACGGTACCCGTGGCAGATATGAAGACCCACTACGCAGAGG
CGTGCCCACATCGCTTCGTGCCTTGTGGGGCCGGGTGCGGTTACAAGATA

mRNA_H-fluviatilis_contig100046.71.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

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