mRNA_H-fluviatilis_contig100029.68.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100029.68.1
Unique NamemRNA_H-fluviatilis_contig100029.68.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.670e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVKKLTMKKAYEVTMETHK+GKATVTQAWKSK+E YCL+LQQCGLT
Sbjct:  135 VVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLT 180
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.110e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVKKLTMK AYE+TMETHKAGKATVTQAWKS+AE YCL LQQCGLT
Sbjct:   54 VVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLT 99
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.690e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVKKLTMK AYE+TMETHKAGKATVTQAWKS+AE YCL LQQCGLT
Sbjct:  101 VVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLT 146
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7S2EBD0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBD0_TRICV)

HSP 1 Score: 58.2 bits (139), Expect = 6.850e-9
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKATVT+AW+ KAE YCL LQ+ GLT
Sbjct:  167 VVSTLDRKRAFDICMETHGIGKATVTKAWRQKAEQYCLNLQRQGLT 212
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A6U6HVZ7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6HVZ7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.260e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct:   68 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLT 113
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7R9Z3E7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3E7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.370e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct:   86 VVSTLDRKRAFDICMETHGIGKATITKTWRQKAEQYCLNLQRQGLT 131
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A6U6I937_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I937_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.070e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct:  122 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLT 167
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7R9ULH9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9ULH9_DIALT)

HSP 1 Score: 54.3 bits (129), Expect = 9.110e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVK ++ KKAY++T+E H +G ATVT  WK +A+ YC+ LQ+ GLT
Sbjct:  109 VVKTVSRKKAYKITIECHMSGIATVTTTWKQQAKSYCMGLQKMGLT 154
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A8J9TNB5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TNB5_PHATR)

HSP 1 Score: 49.3 bits (116), Expect = 1.870e-6
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            V+  L  K A+E+ ++TH  GKAT+T+ WK +AE +CL LQ+ GLT
Sbjct:   36 VIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQHCLGLQRQGLT 81
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BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A1E7FBP7_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBP7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.680e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   13 LTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            L  K ++E+ +ETH  GKATVT+ WK +AE +CL LQ+ GLT
Sbjct:   97 LDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLT 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LIY1_ECTSI4.670e-2091.30ClpS domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZHY3_9STRA3.110e-1989.13Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
A0A835ZBL6_9STRA5.690e-1989.13Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
A0A7S2EBD0_TRICV6.850e-960.87Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U6HVZ7_9STRA1.260e-856.52Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9Z3E7_9STRA1.370e-856.52Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U6I937_9STRA3.070e-856.52Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9ULH9_DIALT9.110e-854.35Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A8J9TNB5_PHATR1.870e-650.00Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1E7FBP7_9STRA4.680e-654.76ClpS domain-containing protein n=1 Tax=Fragilariop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100029contigH-fluviatilis_contig100029:136..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog2880.D8LIY1
KEGG koko:K06891
EggNOG free text desc.ATP-dependent Clp protease adaptor protein ClpS
EggNOG OGs2E2N9@1,2S9V9@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
Ec32 orthologEc-20_001990.1
Exons2
Model size138
Cds size120
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100029.68.1prot_H-fluviatilis_contig100029.68.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100029 154..862 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.276087-UTR-H-fluviatilis_contig100029:135..1531622928996.276087-UTR-H-fluviatilis_contig100029:135..153Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100029 136..153 +
1691135143.7717063-UTR-H-fluviatilis_contig100029:135..1531691135143.7717063-UTR-H-fluviatilis_contig100029:135..153Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100029 136..153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.2924135-CDS-H-fluviatilis_contig100029:153..2311622928996.2924135-CDS-H-fluviatilis_contig100029:153..231Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100029 154..231 +
1691135143.7829587-CDS-H-fluviatilis_contig100029:153..2311691135143.7829587-CDS-H-fluviatilis_contig100029:153..231Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100029 154..231 +
1622928996.3085349-CDS-H-fluviatilis_contig100029:820..8621622928996.3085349-CDS-H-fluviatilis_contig100029:820..862Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100029 821..862 +
1691135143.7956927-CDS-H-fluviatilis_contig100029:820..8621691135143.7956927-CDS-H-fluviatilis_contig100029:820..862Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100029 821..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100029.68.1

>prot_H-fluviatilis_contig100029.68.1 ID=prot_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=40bp
MKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT
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mRNA from alignment at H-fluviatilis_contig100029:136..862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100029.68.1 ID=mRNA_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=727bp|location=Sequence derived from alignment at H-fluviatilis_contig100029:136..862+ (Heribaudiella fluviatilis SAG_13_90)
GTGGTAAAGAAGCTGACCATGAAGAAGGCGTACGAGGTAACTATGGAAAC
ACACAAAGCGGGGAAGGCTACCGTAACACAAGCGTGGAAAAGCAAGGTGA
TAGCTTACTCTGTTCATCTGCTCGAGCAGTGTTTCCTCGGCATTTTGCAC
GCGTTTGATGAGTGTCGTCGAATGTTGTGTCTTCAGCAAGCTTCCGCCGA
TCTTCGAAGCATCTATTTCGCGAGCTAGCGCCGATAGAGTTAGCCTCACC
GCTACAATGGAGCATGGGCTCAAATATGGTGAACTTGCACCAGCATGAAT
TTTATTCACTCGCCCATGTTGGGCGTTCAAGAGCGAAGCCACGAACACGT
TGTTTCGAACGGATCATCATGACTTCGTACAGTAACATGTGCAAGAACAG
ACCGAACAGGAAGCACTAAGGATCCCAGTGTAGCTGGTCGAGCGCCGTCA
TTCTCACCGTCCAATGTGTACCCTTGTGCAAAATGACAACATCAGGGGGC
AGCTTCCCACACACTGCAACACACCCCGTTGGAGCTGACGTTTAACATGA
AGTACGCTTACGCGCAGCGAGGTACAGCACTTTTGTGTTGTGTTGAGATC
AAGTTGGTAATCCGAGCGAAAGCGAAAATCGCTGCGTTTCTGACGTGTGT
TCTCTATGCCCACCCGAAACGAAAACGCAAAACAGGCGGAGGGATACTGC
CTAAAATTGCAACAGTGTGGTCTAACC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100029:136..862+

>mRNA_H-fluviatilis_contig100029.68.1 ID=mRNA_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=240bp|location=Sequence derived from alignment at H-fluviatilis_contig100029:136..862+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAGAAGGCGTACGAGGTAACTATGGAAACACACAAAGCGGGGAAGGC
TACCGTAACACAAGCGTGGAAAAGCAAGATGAAGAAGGCGTACGAGGTAA
CTATGGAAACACACAAAGCGGGGAAGGCTACCGTAACACAAGCGTGGAAA
AGCAAGGCGGAGGGATACTGCCTAAAATTGCAACAGTGTGGTCTAACCGC
GGAGGGATACTGCCTAAAATTGCAACAGTGTGGTCTAACC
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