mRNA_H-fluviatilis_contig100029.68.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.670e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVKKLTMKKAYEVTMETHK+GKATVTQAWKSK+E YCL+LQQCGLT
Sbjct:  135 VVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLT 180

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.110e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVKKLTMK AYE+TMETHKAGKATVTQAWKS+AE YCL LQQCGLT
Sbjct:   54 VVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLT 99

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.690e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVKKLTMK AYE+TMETHKAGKATVTQAWKS+AE YCL LQQCGLT
Sbjct:  101 VVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLT 146

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7S2EBD0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBD0_TRICV)

HSP 1 Score: 58.2 bits (139), Expect = 6.850e-9
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKATVT+AW+ KAE YCL LQ+ GLT
Sbjct:  167 VVSTLDRKRAFDICMETHGIGKATVTKAWRQKAEQYCLNLQRQGLT 212

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A6U6HVZ7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6HVZ7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.260e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct:   68 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLT 113

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7R9Z3E7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3E7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.370e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct:   86 VVSTLDRKRAFDICMETHGIGKATITKTWRQKAEQYCLNLQRQGLT 131

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A6U6I937_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I937_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.070e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VV  L  K+A+++ METH  GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct:  122 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLT 167

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7R9ULH9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9ULH9_DIALT)

HSP 1 Score: 54.3 bits (129), Expect = 9.110e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            VVK ++ KKAY++T+E H +G ATVT  WK +A+ YC+ LQ+ GLT
Sbjct:  109 VVKTVSRKKAYKITIECHMSGIATVTTTWKQQAKSYCMGLQKMGLT 154

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A8J9TNB5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TNB5_PHATR)

HSP 1 Score: 49.3 bits (116), Expect = 1.870e-6
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            V+  L  K A+E+ ++TH  GKAT+T+ WK +AE +CL LQ+ GLT
Sbjct:   36 VIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQHCLGLQRQGLT 81

[Close]

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A1E7FBP7_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBP7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.680e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1

Query:   13 LTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
            L  K ++E+ +ETH  GKATVT+ WK +AE +CL LQ+ GLT
Sbjct:   97 LDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLT 138

The following BLAST results are available for this feature:

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot

BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LIY1_ECTSI	4.670e-20	91.30	ClpS domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A835ZHY3_9STRA	3.110e-19	89.13	Ribosomal protein L7/L12, C-terminal/adaptor prote...	[more]
A0A835ZBL6_9STRA	5.690e-19	89.13	Ribosomal protein L7/L12, C-terminal/adaptor prote...	[more]
A0A7S2EBD0_TRICV	6.850e-9	60.87	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A6U6HVZ7_9STRA	1.260e-8	56.52	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7R9Z3E7_9STRA	1.370e-8	56.52	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A6U6I937_9STRA	3.070e-8	56.52	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
A0A7R9ULH9_DIALT	9.110e-8	54.35	Hypothetical protein n=1 Tax=Diacronema lutheri Ta...	[more]
A0A8J9TNB5_PHATR	1.870e-6	50.00	Hypothetical protein (Fragment) n=2 Tax=Phaeodacty...	[more]
A0A1E7FBP7_9STRA	4.680e-6	54.76	ClpS domain-containing protein n=1 Tax=Fragilariop...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-fluviatilis_contig100029	contig	H-fluviatilis_contig100029:136..862 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-fluviatilis_contig100029:136..862+
coding sequence from alignment at H-fluviatilis_contig100029:136..862+

protein sequence of mRNA_H-fluviatilis_contig100029.68.1

>prot_H-fluviatilis_contig100029.68.1 ID=prot_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=40bp
MKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT

mRNA from alignment at H-fluviatilis_contig100029:136..862+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-fluviatilis_contig100029.68.1 ID=mRNA_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=727bp|location=Sequence derived from alignment at H-fluviatilis_contig100029:136..862+ (Heribaudiella fluviatilis SAG_13_90)
GTGGTAAAGAAGCTGACCATGAAGAAGGCGTACGAGGTAACTATGGAAAC
ACACAAAGCGGGGAAGGCTACCGTAACACAAGCGTGGAAAAGCAAGGTGA
TAGCTTACTCTGTTCATCTGCTCGAGCAGTGTTTCCTCGGCATTTTGCAC
GCGTTTGATGAGTGTCGTCGAATGTTGTGTCTTCAGCAAGCTTCCGCCGA
TCTTCGAAGCATCTATTTCGCGAGCTAGCGCCGATAGAGTTAGCCTCACC
GCTACAATGGAGCATGGGCTCAAATATGGTGAACTTGCACCAGCATGAAT
TTTATTCACTCGCCCATGTTGGGCGTTCAAGAGCGAAGCCACGAACACGT
TGTTTCGAACGGATCATCATGACTTCGTACAGTAACATGTGCAAGAACAG
ACCGAACAGGAAGCACTAAGGATCCCAGTGTAGCTGGTCGAGCGCCGTCA
TTCTCACCGTCCAATGTGTACCCTTGTGCAAAATGACAACATCAGGGGGC
AGCTTCCCACACACTGCAACACACCCCGTTGGAGCTGACGTTTAACATGA
AGTACGCTTACGCGCAGCGAGGTACAGCACTTTTGTGTTGTGTTGAGATC
AAGTTGGTAATCCGAGCGAAAGCGAAAATCGCTGCGTTTCTGACGTGTGT
TCTCTATGCCCACCCGAAACGAAAACGCAAAACAGGCGGAGGGATACTGC
CTAAAATTGCAACAGTGTGGTCTAACC

Coding sequence (CDS) from alignment at H-fluviatilis_contig100029:136..862+

>mRNA_H-fluviatilis_contig100029.68.1 ID=mRNA_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=240bp|location=Sequence derived from alignment at H-fluviatilis_contig100029:136..862+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAGAAGGCGTACGAGGTAACTATGGAAACACACAAAGCGGGGAAGGC
TACCGTAACACAAGCGTGGAAAAGCAAGATGAAGAAGGCGTACGAGGTAA
CTATGGAAACACACAAAGCGGGGAAGGCTACCGTAACACAAGCGTGGAAA
AGCAAGGCGGAGGGATACTGCCTAAAATTGCAACAGTGTGGTCTAACCGC
GGAGGGATACTGCCTAAAATTGCAACAGTGTGGTCTAACC