mRNA_H-fluviatilis_contig100029.68.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 4.670e-20 Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VVKKLTMKKAYEVTMETHK+GKATVTQAWKSK+E YCL+LQQCGLT
Sbjct: 135 VVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLT 180
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.110e-19 Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VVKKLTMK AYE+TMETHKAGKATVTQAWKS+AE YCL LQQCGLT
Sbjct: 54 VVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLT 99
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.690e-19 Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VVKKLTMK AYE+TMETHKAGKATVTQAWKS+AE YCL LQQCGLT
Sbjct: 101 VVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLT 146
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7S2EBD0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBD0_TRICV) HSP 1 Score: 58.2 bits (139), Expect = 6.850e-9 Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VV L K+A+++ METH GKATVT+AW+ KAE YCL LQ+ GLT
Sbjct: 167 VVSTLDRKRAFDICMETHGIGKATVTKAWRQKAEQYCLNLQRQGLT 212
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A6U6HVZ7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6HVZ7_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.260e-8 Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VV L K+A+++ METH GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct: 68 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLT 113
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7R9Z3E7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3E7_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.370e-8 Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VV L K+A+++ METH GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct: 86 VVSTLDRKRAFDICMETHGIGKATITKTWRQKAEQYCLNLQRQGLT 131
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A6U6I937_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I937_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.070e-8 Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VV L K+A+++ METH GKAT+T+ W+ KAE YCL LQ+ GLT
Sbjct: 122 VVTTLDRKRAFDICMETHGIGKATITKVWRQKAEQYCLNLQRQGLT 167
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A7R9ULH9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9ULH9_DIALT) HSP 1 Score: 54.3 bits (129), Expect = 9.110e-8 Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
VVK ++ KKAY++T+E H +G ATVT WK +A+ YC+ LQ+ GLT
Sbjct: 109 VVKTVSRKKAYKITIECHMSGIATVTTTWKQQAKSYCMGLQKMGLT 154
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A8J9TNB5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TNB5_PHATR) HSP 1 Score: 49.3 bits (116), Expect = 1.870e-6 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 Query: 1 VVKKLTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
V+ L K A+E+ ++TH GKAT+T+ WK +AE +CL LQ+ GLT
Sbjct: 36 VIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQHCLGLQRQGLT 81
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Match: A0A1E7FBP7_9STRA (ClpS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBP7_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 4.680e-6 Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 Query: 13 LTMKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLT 138
L K ++E+ +ETH GKATVT+ WK +AE +CL LQ+ GLT
Sbjct: 97 LDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLT 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100029.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100029.68.1 >prot_H-fluviatilis_contig100029.68.1 ID=prot_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=40bp MKKAYEVTMETHKAGKATVTQAWKSKAEGYCLKLQQCGLTback to top mRNA from alignment at H-fluviatilis_contig100029:136..862+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig100029.68.1 ID=mRNA_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=727bp|location=Sequence derived from alignment at H-fluviatilis_contig100029:136..862+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig100029:136..862+ >mRNA_H-fluviatilis_contig100029.68.1 ID=mRNA_H-fluviatilis_contig100029.68.1|Name=mRNA_H-fluviatilis_contig100029.68.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=240bp|location=Sequence derived from alignment at H-fluviatilis_contig100029:136..862+ (Heribaudiella fluviatilis SAG_13_90)back to top |