mRNA_H-canaliculatus_F_contig13313.2707.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 412 bits (1058), Expect = 6.570e-138 Identity = 212/228 (92.98%), Postives = 224/228 (98.25%), Query Frame = 1
Query: 4 HARARINPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 687
HARA INPC ERELDLRGYKIPMIENLGVTQDQFDA+DFSDNEIKKLDNFPRYKRLSSL+LCNNHV+KISEDLGTALPNL+CLILTNNKLSTLAELKGLGTC+KL MLSLLHNEV+NKQYYRLYMINL+P+LKQLDFQKVTVKERE+A RLA+SQAGQAM+QDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG
Sbjct: 10 HARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 237
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A6H5L3Q9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE) HSP 1 Score: 220 bits (560), Expect = 7.910e-65 Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 1
Query: 268 KLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 687
+LSTLAELKGLGTC+KL MLSLLHNEV+NKQYYRLYMINLVP+LKQLDFQKVTVK AGQAM+QDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG
Sbjct: 2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 129
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 223 bits (567), Expect = 4.800e-64 Identity = 124/220 (56.36%), Postives = 157/220 (71.36%), Query Frame = 1
Query: 7 ARARINPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 666
ARA +N ERELDLRG+KIP+IEN+GVTQDQFD IDFSDNEI+KLDNFPR RL++L+L NN +A+I +D+G LPNL+CL+LTNN +S L+EL LG C +L MLSLL N V Q+YRLY+I+ +P+LK LDF KV +ER A RL +S AG+AM +D+A QA KTF PG A LT R I +A T EEI+ L + ++AGI P+
Sbjct: 11 ARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A0U2IG20_ACAPC (U2 small nuclear ribonucleoprotein A n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG20_ACAPC) HSP 1 Score: 207 bits (526), Expect = 1.060e-60 Identity = 119/231 (51.52%), Postives = 158/231 (68.40%), Query Frame = 1
Query: 19 INPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAP--------AADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 687
INP +RELDLRGYKIP+IENLG T DQFD ID SDNE++KLD FP+ RL +L+L NN + +++E L LPNL L++TNN L LA+L+ L T KLEM+SLLHN V+ K+ YRLY+I+ P+LK LDF+K+ +KEREAA L K++ G+ ++D+ QA KAKTF PGAP AA+ LT E IAKA ++EEIE L++ ++ G +P + GG
Sbjct: 16 INPVRDRELDLRGYKIPVIENLGSTLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDI--QA-KAKTFVPGAPLPEATNNKAANPAGLTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGG 243
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A0K2V8V0_LEPSM (Small nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM) HSP 1 Score: 203 bits (517), Expect = 2.050e-59 Identity = 113/222 (50.90%), Postives = 154/222 (69.37%), Query Frame = 1
Query: 19 INPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIP 663
INP +RELDLRGYKIP+IENLG T DQFD IDFSDNEI++LDNFP RL +L NN + +I +++ +LPNL LILTNN L LA+L+ L L LSL+ N V++K YRLY+I+ +P L+ LDF+KV +KERE A KS+ G+ +++++ ++A AKTFTPGAP ADE K ++ + D+I A+ATT+EEIE L++ ++ G IP
Sbjct: 16 INPVRDRELDLRGYKIPVIENLGATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIP 235
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 208 bits (529), Expect = 2.830e-59 Identity = 115/225 (51.11%), Postives = 156/225 (69.33%), Query Frame = 1
Query: 7 ARARINPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 678
A A INPC ERELDLRGYKIP+IEN+G TQD FD IDFSDNEIKKL+NFPR +RL++L+ NNH++KI+E + +PNL+ L ++ LAEL L KL +LSLL N V+ +Q+YRLY+I+ P LK LDF+KV +ER+ A RL KS+AGQ M DV ++ KTF G E+K LT++ + + + I ATT EE++ L ++++AGI+P+ K
Sbjct: 11 ADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR) HSP 1 Score: 202 bits (514), Expect = 3.610e-59 Identity = 111/224 (49.55%), Postives = 152/224 (67.86%), Query Frame = 1
Query: 22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 684
NP +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP KRL +L++ NN + ++ E+L +LP LT LILTNN + L +L L T L +LSLL N V NK++YRLYMIN +P ++ LDFQKV KER+ A ++ K + G + +D+A+ + KTFTPG PA E+K T +A + IA A+++ E+E L +QAG IP + ++G
Sbjct: 17 NPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A3Q1EK11_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE) HSP 1 Score: 201 bits (512), Expect = 7.160e-59 Identity = 109/224 (48.66%), Postives = 153/224 (68.30%), Query Frame = 1
Query: 22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 684
NP +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP +RL +L++ NN + +I E+L +LP+LT L+LTNN + L +L L T L +LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ K + G + +D+A+ + KTFTPG A E+K T +A + IA A+++ E+E L +QAG IP + +QG
Sbjct: 17 NPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A672F325_SALFA (LRRcap domain-containing protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672F325_SALFA) HSP 1 Score: 201 bits (512), Expect = 2.890e-58 Identity = 109/223 (48.88%), Postives = 151/223 (67.71%), Query Frame = 1
Query: 22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYA--DRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 684
NP +RELDLRGYKIP++ENLG T DQFD IDFSDNEI+KLD FP KRL +L++ NN + +I ++L LP+LT L+LTNN + L +L L + L +LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ K + G + +D+A+ + KTFTPG PA E+K + A + IA A+++ E+E L +QAG IP +QG
Sbjct: 17 NPVRDRELDLRGYKIPVLENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGDNLEQCLPSLTELVLTNNNIQELGDLDPLASVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVPAQPEKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRELRQG 236
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A3Q3LQW2_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=7 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q3LQW2_9TELE) HSP 1 Score: 201 bits (510), Expect = 6.250e-58 Identity = 111/227 (48.90%), Postives = 154/227 (67.84%), Query Frame = 1
Query: 22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGG 693
NP +RELDLRGYKIP++ENLG T DQFD IDFSDNEI+KLD FP KRL +L++ NN + +I E+L +LP+LT L+LTNN + L +L L + L +LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ K + G + +D+A+ + KTFTPG A E++ T +A + IA A+++ E+E L +QAG IP + QG GG
Sbjct: 17 NPVRDRELDLRGYKIPVLENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLASVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAK---RPKTFTPGVAAQVEKRRTGPSQAEVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLTQGPGG 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13313.2707.1 >prot_H-canaliculatus_F_contig13313.2707.1 ID=prot_H-canaliculatus_F_contig13313.2707.1|Name=mRNA_H-canaliculatus_F_contig13313.2707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=362bp MIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDback to top mRNA from alignment at H-canaliculatus_F_contig13313:142..3193+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13313.2707.1 ID=mRNA_H-canaliculatus_F_contig13313.2707.1|Name=mRNA_H-canaliculatus_F_contig13313.2707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13313:142..3193+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13313:142..3193+ >mRNA_H-canaliculatus_F_contig13313.2707.1 ID=mRNA_H-canaliculatus_F_contig13313.2707.1|Name=mRNA_H-canaliculatus_F_contig13313.2707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2172bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13313:142..3193+ (Hapterophycus canaliculatus Oshoro5f female)back to top |