mRNA_H-canaliculatus_F_contig13313.2707.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13313.2707.1
Unique NamemRNA_H-canaliculatus_F_contig13313.2707.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 6.570e-138
Identity = 212/228 (92.98%), Postives = 224/228 (98.25%), Query Frame = 1
Query:    4 HARARINPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 687
            HARA INPC ERELDLRGYKIPMIENLGVTQDQFDA+DFSDNEIKKLDNFPRYKRLSSL+LCNNHV+KISEDLGTALPNL+CLILTNNKLSTLAELKGLGTC+KL MLSLLHNEV+NKQYYRLYMINL+P+LKQLDFQKVTVKERE+A RLA+SQAGQAM+QDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG
Sbjct:   10 HARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 237          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A6H5L3Q9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 7.910e-65
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 1
Query:  268 KLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 687
            +LSTLAELKGLGTC+KL MLSLLHNEV+NKQYYRLYMINLVP+LKQLDFQKVTVK            AGQAM+QDVAQQAEKAKTFTPGAPAA+EQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG
Sbjct:    2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 129          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 223 bits (567), Expect = 4.800e-64
Identity = 124/220 (56.36%), Postives = 157/220 (71.36%), Query Frame = 1
Query:    7 ARARINPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 666
            ARA +N   ERELDLRG+KIP+IEN+GVTQDQFD IDFSDNEI+KLDNFPR  RL++L+L NN +A+I +D+G  LPNL+CL+LTNN +S L+EL  LG C +L MLSLL N V   Q+YRLY+I+ +P+LK LDF KV  +ER  A RL +S AG+AM +D+A QA   KTF PG  A     LT   R      I +A T EEI+ L + ++AGI P+
Sbjct:   11 ARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A0U2IG20_ACAPC (U2 small nuclear ribonucleoprotein A n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG20_ACAPC)

HSP 1 Score: 207 bits (526), Expect = 1.060e-60
Identity = 119/231 (51.52%), Postives = 158/231 (68.40%), Query Frame = 1
Query:   19 INPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAP--------AADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 687
            INP  +RELDLRGYKIP+IENLG T DQFD ID SDNE++KLD FP+  RL +L+L NN + +++E L   LPNL  L++TNN L  LA+L+ L T  KLEM+SLLHN V+ K+ YRLY+I+  P+LK LDF+K+ +KEREAA  L K++ G+  ++D+  QA KAKTF PGAP        AA+   LT E        IAKA ++EEIE L++ ++ G +P    + GG
Sbjct:   16 INPVRDRELDLRGYKIPVIENLGSTLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDI--QA-KAKTFVPGAPLPEATNNKAANPAGLTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGG 243          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A0K2V8V0_LEPSM (Small nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM)

HSP 1 Score: 203 bits (517), Expect = 2.050e-59
Identity = 113/222 (50.90%), Postives = 154/222 (69.37%), Query Frame = 1
Query:   19 INPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIP 663
            INP  +RELDLRGYKIP+IENLG T DQFD IDFSDNEI++LDNFP   RL +L   NN + +I +++  +LPNL  LILTNN L  LA+L+ L     L  LSL+ N V++K  YRLY+I+ +P L+ LDF+KV +KERE A    KS+ G+ +++++ ++A  AKTFTPGAP ADE K  ++   +  D+I       A+ATT+EEIE L++ ++ G IP
Sbjct:   16 INPVRDRELDLRGYKIPVIENLGATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIP 235          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK)

HSP 1 Score: 208 bits (529), Expect = 2.830e-59
Identity = 115/225 (51.11%), Postives = 156/225 (69.33%), Query Frame = 1
Query:    7 ARARINPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 678
            A A INPC ERELDLRGYKIP+IEN+G TQD FD IDFSDNEIKKL+NFPR +RL++L+  NNH++KI+E +   +PNL+ L     ++  LAEL  L    KL +LSLL N V+ +Q+YRLY+I+  P LK LDF+KV  +ER+ A RL KS+AGQ M  DV ++    KTF  G     E+K LT++ + +  + I  ATT EE++ L ++++AGI+P+   K
Sbjct:   11 ADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR)

HSP 1 Score: 202 bits (514), Expect = 3.610e-59
Identity = 111/224 (49.55%), Postives = 152/224 (67.86%), Query Frame = 1
Query:   22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 684
            NP  +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP  KRL +L++ NN + ++ E+L  +LP LT LILTNN +  L +L  L T   L +LSLL N V NK++YRLYMIN +P ++ LDFQKV  KER+ A ++ K + G  + +D+A+   + KTFTPG PA  E+K T   +A      + IA A+++ E+E L   +QAG IP  + ++G
Sbjct:   17 NPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A3Q1EK11_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE)

HSP 1 Score: 201 bits (512), Expect = 7.160e-59
Identity = 109/224 (48.66%), Postives = 153/224 (68.30%), Query Frame = 1
Query:   22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 684
            NP  +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP  +RL +L++ NN + +I E+L  +LP+LT L+LTNN +  L +L  L T   L +LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ K + G  + +D+A+   + KTFTPG  A  E+K T   +A      + IA A+++ E+E L   +QAG IP  + +QG
Sbjct:   17 NPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A672F325_SALFA (LRRcap domain-containing protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672F325_SALFA)

HSP 1 Score: 201 bits (512), Expect = 2.890e-58
Identity = 109/223 (48.88%), Postives = 151/223 (67.71%), Query Frame = 1
Query:   22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRAIYA--DRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 684
            NP  +RELDLRGYKIP++ENLG T DQFD IDFSDNEI+KLD FP  KRL +L++ NN + +I ++L   LP+LT L+LTNN +  L +L  L +   L +LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ K + G  + +D+A+   + KTFTPG PA  E+K       + A  + IA A+++ E+E L   +QAG IP    +QG
Sbjct:   17 NPVRDRELDLRGYKIPVLENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGDNLEQCLPSLTELVLTNNNIQELGDLDPLASVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVPAQPEKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRELRQG 236          
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Match: A0A3Q3LQW2_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=7 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q3LQW2_9TELE)

HSP 1 Score: 201 bits (510), Expect = 6.250e-58
Identity = 111/227 (48.90%), Postives = 154/227 (67.84%), Query Frame = 1
Query:   22 NPCSERELDLRGYKIPMIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISEDLGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYRLYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAKTFTPGAPAADEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGG 693
            NP  +RELDLRGYKIP++ENLG T DQFD IDFSDNEI+KLD FP  KRL +L++ NN + +I E+L  +LP+LT L+LTNN +  L +L  L +   L +LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ K + G  + +D+A+   + KTFTPG  A  E++ T   +A      + IA A+++ E+E L   +QAG IP  +  QG GG
Sbjct:   17 NPVRDRELDLRGYKIPVLENLGATLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLASVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAK---RPKTFTPGVAAQVEKRRTGPSQAEVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLTQGPGG 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13313.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC4_ECTSI6.570e-13892.98U2 small nuclear ribonucleoprotein A n=1 Tax=Ectoc... [more]
A0A6H5L3Q9_9PHAE7.910e-6586.43SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZE59_9STRA4.800e-6456.36Leucine-rich repeat-domain-containing protein n=1 ... [more]
A0A0U2IG20_ACAPC1.060e-6051.52U2 small nuclear ribonucleoprotein A n=1 Tax=Acart... [more]
A0A0K2V8V0_LEPSM2.050e-5950.90Small nuclear ribonucleoprotein polypeptide A' [La... [more]
A0A7S3XKJ1_HETAK2.830e-5951.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3Q3N132_9LABR3.610e-5949.55Small nuclear ribonucleoprotein polypeptide A' n=2... [more]
A0A3Q1EK11_9TELE7.160e-5948.66Small nuclear ribonucleoprotein polypeptide A' n=6... [more]
A0A672F325_SALFA2.890e-5848.88LRRcap domain-containing protein n=4 Tax=Percomorp... [more]
A0A3Q3LQW2_9TELE6.250e-5848.90Small nuclear ribonucleoprotein polypeptide A' n=7... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13313contigH-canaliculatus_F_contig13313:142..3193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.2
Seed ortholog evalue1.3e-100
Seed eggNOG ortholog2880.D8LSC4
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU2 small nuclear ribonucleoprotein A
Ec32 orthologEc-21_003190.1
Exons5
Model size1285
Cds size1086
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.6109662-UTR-H-canaliculatus_F_contig13313:141..2101622929070.6109662-UTR-H-canaliculatus_F_contig13313:141..210Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13313 142..210 +
1696845668.3825636-UTR-H-canaliculatus_F_contig13313:141..2101696845668.3825636-UTR-H-canaliculatus_F_contig13313:141..210Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13313 142..210 +
1622929070.7237136-UTR-H-canaliculatus_F_contig13313:3063..31931622929070.7237136-UTR-H-canaliculatus_F_contig13313:3063..3193Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13313 3064..3193 +
1696845668.4504359-UTR-H-canaliculatus_F_contig13313:3063..31931696845668.4504359-UTR-H-canaliculatus_F_contig13313:3063..3193Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13313 3064..3193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.6285672-CDS-H-canaliculatus_F_contig13313:210..2281622929070.6285672-CDS-H-canaliculatus_F_contig13313:210..228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 211..228 +
1696845668.3968537-CDS-H-canaliculatus_F_contig13313:210..2281696845668.3968537-CDS-H-canaliculatus_F_contig13313:210..228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 211..228 +
1622929070.6410034-CDS-H-canaliculatus_F_contig13313:612..7951622929070.6410034-CDS-H-canaliculatus_F_contig13313:612..795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 613..795 +
1696845668.4093535-CDS-H-canaliculatus_F_contig13313:612..7951696845668.4093535-CDS-H-canaliculatus_F_contig13313:612..795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 613..795 +
1622929070.6524298-CDS-H-canaliculatus_F_contig13313:984..11461622929070.6524298-CDS-H-canaliculatus_F_contig13313:984..1146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 985..1146 +
1696845668.420952-CDS-H-canaliculatus_F_contig13313:984..11461696845668.420952-CDS-H-canaliculatus_F_contig13313:984..1146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 985..1146 +
1622929070.6854894-CDS-H-canaliculatus_F_contig13313:1592..17811622929070.6854894-CDS-H-canaliculatus_F_contig13313:1592..1781Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 1593..1781 +
1696845668.4310534-CDS-H-canaliculatus_F_contig13313:1592..17811696845668.4310534-CDS-H-canaliculatus_F_contig13313:1592..1781Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 1593..1781 +
1622929070.7081828-CDS-H-canaliculatus_F_contig13313:2529..30631622929070.7081828-CDS-H-canaliculatus_F_contig13313:2529..3063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 2530..3063 +
1696845668.4403434-CDS-H-canaliculatus_F_contig13313:2529..30631696845668.4403434-CDS-H-canaliculatus_F_contig13313:2529..3063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13313 2530..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13313.2707.1prot_H-canaliculatus_F_contig13313.2707.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13313 211..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13313.2707.1

>prot_H-canaliculatus_F_contig13313.2707.1 ID=prot_H-canaliculatus_F_contig13313.2707.1|Name=mRNA_H-canaliculatus_F_contig13313.2707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=362bp
MIENLGVTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLMLCNNHVAKISED
LGTALPNLTCLILTNNKLSTLAELKGLGTCSKLEMLSLLHNEVLNKQYYR
LYMINLVPTLKQLDFQKVTVKEREAAGRLAKSQAGQAMMQDVAQQAEKAK
TFTPGAPAADEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSA
NYKQGGGGGEGGGVANGAVAAPAAAAAAASPAKAGTPAPVEGTPASSQEA
PSSKPAPAPAAAAAGDDAASAAAAAPTAPAAAETTPPAAAAAASVPVAAA
SSSMDVDDDAEGTTAAAAAGDHGPGSGDGKQAASPTPASGEGEEEGKEEA
ASSAKGGGGWR*
back to top

mRNA from alignment at H-canaliculatus_F_contig13313:142..3193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13313.2707.1 ID=mRNA_H-canaliculatus_F_contig13313.2707.1|Name=mRNA_H-canaliculatus_F_contig13313.2707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13313:142..3193+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCATGCCCGCGCACGCATCAACCCGTGCTCTGAGCGGGAGCTTGACCT GCGGGGGTACAAGATCCCGATGATCGAAAACTTGGGGGTGAGACGGATGG AGAGCGGGGAGTTGCCGCGAAGTGCAGGGAGAGACAGCCAGCCAGCTAGG AGGCTGTGCAGAGAGAGAGAGAGGGAGGGAGAGAGAGAGAGAGAGAGAAG GAGAAGGGCATTGAAATCGTGGGGTAAAAGAGTTCGATGATTAGAATGCC AGACATTGCGGTAAGGAAGGCGGTGGTCGTCGCGCTCCCTGTTATTCCCC AAGCTGCGTGTTTTGCTCTATCGGCGCCATCACCGCTGTCGCTGTCGCTG TCGCTGTCGCTGCCCCAAGGCCGGTGTTTAGATGATGCTGCTTTGTGTGG CGTTCACGCGACTGCGTCCTGACCAACTCAGCCTGGCTCGCGCGTATCTT ACGGAACGACACCGCGTTCAGGTCACTCAAGACCAGTTCGACGCCATCGA CTTTTCGGACAACGAGATCAAGAAGCTGGACAACTTCCCGCGCTACAAGC GCCTTTCCTCCCTCATGCTCTGCAACAACCACGTGGCCAAGATATCCGAG GACCTCGGCACTGCTCTGCCCAACCTGACTTGCTTGATCCTCACCAACAA TAAGGTGGGGGGTGGGGAGGATGGCTTGGGTCGCGACAGGGTGGAACGGG ATGTGGCTGTCAGCCTTTCGTCTTTGTTGAGGATAAGCCCGTCAAGGTTG ATGATCGGAAGATTGCGACCACGCAGGGTTGAATGTTGACAGGCACACCA CACCACCCATACCCCCCCCCCCCCCTCATTACTGGTTTATCAGCTGTCCA CGCTTGCGGAGCTGAAGGGCCTTGGCACCTGCTCGAAGCTGGAAATGCTG TCGTTGCTGCACAACGAGGTGCTGAACAAGCAGTACTACCGCCTGTACAT GATCAACCTCGTGCCCACCCTGAAGCAGCTGGATTTCCAGAAGGTCACGG TTAAGGTGAGCATCGCTTCGCACACCCGAGAAGAGGAGAGAAGAGGAGAG GACAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAAGAGAAGAGAAGAG AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAGAAGGAAATAA AAAAGAGGCGTTACGCGTGCGTGCCGGGGTCACGCGGGCCGTTCCGTTGG CTGTCCCGTTCGCACGTTTCGTGCTGCTGCCGCAGCAACGCTTCGCATCG TCCCGCGCCCCCCCTCGCCCGCCCGCCCAGCTTCAACCCTATCCCGCCGT CAACCCAACCCAGCCTTCCCAGTCGGTGTGTGCTAACGTGTGCCTGTACG CGCGTGCTCTCGTCCTGTACGCGCGTCTTGTTCTCCCTCCACCTACGCCA GGAGCGTGAGGCGGCGGGCCGGCTCGCGAAGTCGCAGGCGGGGCAGGCGA TGATGCAGGACGTGGCCCAGCAGGCAGAGAAGGCCAAGACCTTCACGCCG GGGGCGCCGGCGGCGGACGAGCAGAAGCTGACGGACGAGCACAGAGCCAT CTACGCCGACCGCATCGCCAAGGCGACCACGGTGGAGGAGGTGCGTCGCG TTGTCTGCGGTTCTGTTGGGAGCCTGTGGGATGCGGGGGGGGCAGGGGGG CTGGCGGGGGCGGCTGCGGAGGGTAGCAGGGAGGTGGGGTTGATCGAGCT CGATCTGTCGCTTGATGAAAGCGCGGTGGTAGTACCAGCGTTATGCACCA GAAAGCCATCGCCTGGTCCGATGCAGCAGTAGGACAGTGCGGTACTACAG TTATGCGGTTGAGAGAGCGGTGAGAAAAGCAGGAGGTTTGACGCTGTGCA AAGCAAATGCGAGACGTTGCATCTCATGCATGGAGGCCATGCGCAGAGGG CAATCGGCACCAACAGAAGGATGTAGTGAGCATGGCAGCAAAGATAGCAT CAGTCGTTTTTTGTCGGTCGCCTGGATGAAAACCCAGAGCCATCTTTCGA ACGACCGGACATGCAGCGCATTCTAAAGGGCGGGGGCACCTCTCCCCTCT TTTCTTACCCTGCTTGTCGCAACGGCGTCAGCTCCGCCTCAGAACTATCC ACCATTCCGTCGCTGCTTCATCTTGAGCCAAGGGGTACATCTTGATAGCG GCCCGCGCTTCTGTTCGAGATCGTCTGGGTGATTTTGTGGCATTCACCGG CCCGTGTCCCGATCTCACGAACGCGAACCCGACCGCCGAAAGCGTGCACG CTCTTGCCCTTGAAATGCTTACGTGCCTCGCCCCTGCGCGCCTCACCCAC GACTCTTTCGCTCCCCGCTTGTGTTCTATTTGTCGCAGATCGAGATGCTT TCCAAGAAGATCCAAGCCGGCATCATCCCGTCCGCGAACTACAAGCAAGG CGGCGGCGGTGGGGAAGGGGGAGGGGTGGCGAACGGGGCTGTCGCTGCGC CAGCCGCCGCCGCCGCCGCCGCGTCTCCCGCAAAGGCTGGTACCCCGGCT CCGGTTGAGGGTACGCCAGCGTCGTCGCAAGAGGCTCCTTCTTCGAAGCC GGCGCCGGCTCCGGCTGCAGCAGCAGCGGGGGATGATGCCGCCTCTGCTG CTGCCGCTGCTCCGACCGCGCCGGCGGCGGCGGAGACGACGCCCCCAGCC GCAGCAGCAGCAGCTTCAGTACCTGTAGCAGCGGCGTCGTCGAGCATGGA CGTGGACGACGACGCAGAAGGGACGACGGCAGCAGCGGCGGCGGGGGACC ATGGCCCTGGGAGCGGAGATGGTAAGCAAGCCGCCTCGCCAACACCAGCG TCCGGAGAGGGAGAGGAAGAGGGCAAGGAGGAAGCGGCAAGTAGCGCCAA GGGGGGGGGGGGGTGGCGATGACGACGACGGTGATGCGATGGTCGATGAC GGAGGGGCAGAAGACGAGGAGGAGGAGGCGGCGGAGGCGGCGGTAGAGGA GGTGAAGGCGGCGGCGACGGAGGAGGGGGCAGGGGACATGGACGAGGAGG AA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13313:142..3193+

>mRNA_H-canaliculatus_F_contig13313.2707.1 ID=mRNA_H-canaliculatus_F_contig13313.2707.1|Name=mRNA_H-canaliculatus_F_contig13313.2707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2172bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13313:142..3193+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGAAAACTTGGGGATGATCGAAAACTTGGGGGTCACTCAAGACCA
GTTCGACGCCATCGACTTTTCGGACAACGAGATCAAGAAGCTGGACAACT
TCCCGCGCTACAAGCGCCTTTCCTCCCTCATGCTCTGCAACAACCACGTG
GCCAAGATATCCGAGGACCTCGGCACTGCTCTGCCCAACCTGACTTGCTT
GATCCTCACCAACAATAAGGTCACTCAAGACCAGTTCGACGCCATCGACT
TTTCGGACAACGAGATCAAGAAGCTGGACAACTTCCCGCGCTACAAGCGC
CTTTCCTCCCTCATGCTCTGCAACAACCACGTGGCCAAGATATCCGAGGA
CCTCGGCACTGCTCTGCCCAACCTGACTTGCTTGATCCTCACCAACAATA
AGCTGTCCACGCTTGCGGAGCTGAAGGGCCTTGGCACCTGCTCGAAGCTG
GAAATGCTGTCGTTGCTGCACAACGAGGTGCTGAACAAGCAGTACTACCG
CCTGTACATGATCAACCTCGTGCCCACCCTGAAGCAGCTGGATTTCCAGA
AGGTCACGGTTAAGCTGTCCACGCTTGCGGAGCTGAAGGGCCTTGGCACC
TGCTCGAAGCTGGAAATGCTGTCGTTGCTGCACAACGAGGTGCTGAACAA
GCAGTACTACCGCCTGTACATGATCAACCTCGTGCCCACCCTGAAGCAGC
TGGATTTCCAGAAGGTCACGGTTAAGGAGCGTGAGGCGGCGGGCCGGCTC
GCGAAGTCGCAGGCGGGGCAGGCGATGATGCAGGACGTGGCCCAGCAGGC
AGAGAAGGCCAAGACCTTCACGCCGGGGGCGCCGGCGGCGGACGAGCAGA
AGCTGACGGACGAGCACAGAGCCATCTACGCCGACCGCATCGCCAAGGCG
ACCACGGTGGAGGAGGAGCGTGAGGCGGCGGGCCGGCTCGCGAAGTCGCA
GGCGGGGCAGGCGATGATGCAGGACGTGGCCCAGCAGGCAGAGAAGGCCA
AGACCTTCACGCCGGGGGCGCCGGCGGCGGACGAGCAGAAGCTGACGGAC
GAGCACAGAGCCATCTACGCCGACCGCATCGCCAAGGCGACCACGGTGGA
GGAGATCGAGATGCTTTCCAAGAAGATCCAAGCCGGCATCATCCCGTCCG
CGAACTACAAGCAAGGCGGCGGCGGTGGGGAAGGGGGAGGGGTGGCGAAC
GGGGCTGTCGCTGCGCCAGCCGCCGCCGCCGCCGCCGCGTCTCCCGCAAA
GGCTGGTACCCCGGCTCCGGTTGAGGGTACGCCAGCGTCGTCGCAAGAGG
CTCCTTCTTCGAAGCCGGCGCCGGCTCCGGCTGCAGCAGCAGCGGGGGAT
GATGCCGCCTCTGCTGCTGCCGCTGCTCCGACCGCGCCGGCGGCGGCGGA
GACGACGCCCCCAGCCGCAGCAGCAGCAGCTTCAGTACCTGTAGCAGCGG
CGTCGTCGAGCATGGACGTGGACGACGACGCAGAAGGGACGACGGCAGCA
GCGGCGGCGGGGGACCATGGCCCTGGGAGCGGAGATGGTAAGCAAGCCGC
CTCGCCAACACCAGCGTCCGGAGAGGGAGAGGAAGAGGGCAAGGAGGAAG
CGGCAAGTAGCGCCAAGGGGGGGGGGGGGTGGCGATGAATCGAGATGCTT
TCCAAGAAGATCCAAGCCGGCATCATCCCGTCCGCGAACTACAAGCAAGG
CGGCGGCGGTGGGGAAGGGGGAGGGGTGGCGAACGGGGCTGTCGCTGCGC
CAGCCGCCGCCGCCGCCGCCGCGTCTCCCGCAAAGGCTGGTACCCCGGCT
CCGGTTGAGGGTACGCCAGCGTCGTCGCAAGAGGCTCCTTCTTCGAAGCC
GGCGCCGGCTCCGGCTGCAGCAGCAGCGGGGGATGATGCCGCCTCTGCTG
CTGCCGCTGCTCCGACCGCGCCGGCGGCGGCGGAGACGACGCCCCCAGCC
GCAGCAGCAGCAGCTTCAGTACCTGTAGCAGCGGCGTCGTCGAGCATGGA
CGTGGACGACGACGCAGAAGGGACGACGGCAGCAGCGGCGGCGGGGGACC
ATGGCCCTGGGAGCGGAGATGGTAAGCAAGCCGCCTCGCCAACACCAGCG
TCCGGAGAGGGAGAGGAAGAGGGCAAGGAGGAAGCGGCAAGTAGCGCCAA
GGGGGGGGGGGGGTGGCGATGA
back to top