mRNA_H-paniculata_contig19637.4989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.760e-38 Identity = 101/292 (34.59%), Postives = 148/292 (50.68%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIA---------GRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V +L+++LYGLKQS R WN T+D+F+ IG + TD C+Y RDD I VV+YVDDL++A +R + F+ + +L + C G+EV R +G + + Q ++ VL +G ++C+ V TP + +K + G D GV YR V ++MY GTR D+A AV ++ DPC + K + R L GI G +G +G ADW ++E R+ST+GYVF LN G I+ S KQ+ V+ SSTE
Sbjct: 136 VCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMI--FVVLYVDDLILACNDTDLLAATKRALSERFEMS-DLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEG--------GCKHDDTMQGVP------------YRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGELIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTE 404
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT) HSP 1 Score: 149 bits (376), Expect = 9.710e-37 Identity = 99/297 (33.33%), Postives = 161/297 (54.21%), Query Frame = 1
Query: 10 FSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVI-AGRREKVDDFKHNINL-----ALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGF-GADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
+S+D RL+K+LYGLKQ+ R WN L++ L +G +S D+C+YF + DG I ++V +YVDDL+I + + + D K +N L A + + ++ + +I + Q Y++E+L +G +C+ V TP+ K S AD P+ P+ + R + YR ++ LMY S TR DI++AV++ ++ +P ++ + K + R L + +T +SN G+ G+ ADW +++DR+ST+G+VF GAIS CS KQQ VS SS E
Sbjct: 997 YSKDSSKCCRLKKALYGLKQASRVWNQKLEETLKRLGFQQSDYDTCVYF-KSDGNRI-LIVAIYVDDLLIFSSCKNWIMDVKRQLNTHFKMKELGEASYCLGMKIIKTGDSITLDQEHYVKEILTKFGMADCKPVTTPLNVSEKLS---KADCPNTPEEI-----------------REMQNVPYREVIGCLMYLSQCTRPDISFAVNKLSQFNSNPGMKHWLAAKHLLRYLQGTSSYKLTYHRESNMDGIVGYCDADWAADIDDRRSTSGFVFMSQGGAISWCSRKQQTVSLSSCE 1271
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL) HSP 1 Score: 142 bits (359), Expect = 4.830e-36 Identity = 99/292 (33.90%), Postives = 146/292 (50.00%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGR--------REKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGF-GADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V RL+KS+YGL QSGR+WN D + +GL ++ D+C+Y+ DG ++ V V+VDDL+I R+++ ++ R GIEV R R GT+ +SQ YI +L YGF V TP+ T + PK + A EY+ M+ LMYA+ TR DIAYAV + ++ +P E CK +FR LS ++G+ G + +G G+ AD+ N++DRKS +GY + L A + S KQ V+ S+TE
Sbjct: 31 VWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYYRERDGEQV--WVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQL------PKDAPPAAPSVRA--------------EYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFAWSSKKQTTVATSTTE 300
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A1Y1NIJ3_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NIJ3_PHOPY) HSP 1 Score: 140 bits (353), Expect = 2.300e-35 Identity = 105/292 (35.96%), Postives = 144/292 (49.32%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGRREKVDDFKHNI--------NLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG-ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V RL++SLYGLKQS R+WNN L LVG G RS D CLY + +G ILV YVDDL+IA EK+ I +L R GIEV R G ISQ YI +++K G E+ + P P++ V P + DKP L D +TEY+ +V L++ + +R DIA V +R++ +P D+N + I R L ++ + + + GL G+ ADW E DRKS +G++FK G IS KQ VS S+ E
Sbjct: 16 VCRLKRSLYGLKQSARSWNNKLHQVLVGDGFKRSEADPCLYSKQVNGKRCYILV--YVDDLIIASEEEKLITLAGRILERNFEIVSLGEVRNYVGIEVERDNA-GDFHISQRKYITDIVKSAGLEDAKSSPIPID--VGYFKPNTEDKP---------LPD---------------NTEYQKLVGKLLFVAVNSRPDIAAPVSILSRKLSNPTQRDWNELRRIVRYLKGSINLKLRLSNRGDDSGLVGYADADWAECRNDRKSNSGFLFKFCGGTISWACRKQTCVSLSTAE 278
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL) HSP 1 Score: 145 bits (365), Expect = 2.830e-35 Identity = 98/292 (33.56%), Postives = 150/292 (51.37%), Query Frame = 1
Query: 37 RLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIA---------GRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEG--KVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
+L+++LYGLKQS R WN T+D+F+ IG + D C+Y R+D + VV+YVDDL++A +R + F+ + +L + C G+EV+R +G + + Q +++ VL +G ++C+ V TP + K+ S + K E + D+ YR V +LMY GTR D+A +V ++ DPC + K + R L GI G S+G +G ADW ++E R+ST+GYV LN G IS S KQ+ V+ SSTE
Sbjct: 1008 KLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSATM--FVVIYVDDLILACNNKDLLAATKRALSERFEMS-DLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDE------TMKDV----------------PYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGELIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTE 1274
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 144 bits (362), Expect = 7.010e-35 Identity = 104/293 (35.49%), Postives = 150/293 (51.19%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVI---------AGRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG-ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V +L+K++YGLKQSGR WNNTLD+ L +G RS ++CLY + G + VYVDDL+I A +R+ F+ + + +LS G+E++R G + + Q +YIR +LK YG + CR V TP++ P L D V N T+Y+ ++ SLMY + +R DI +AV + ++R +P E N K I R LS ++ I + G + GF ADW + DRKS +GY F L A S S KQ +V+ SSTE
Sbjct: 960 VLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFL-GLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLD----------------PGFLVCCKDDSCVKV---------NVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTE 1222
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A8H6XNZ2_9AGAR (Uncharacterized protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNZ2_9AGAR) HSP 1 Score: 143 bits (360), Expect = 1.310e-34 Identity = 104/294 (35.37%), Postives = 146/294 (49.66%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGR-REKVDDFKHNI-------NLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG---ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V RL K++YGLKQSGR WN D L I L ++ D C+Y+ DG V V+VDDL+I R + + K I +L R GIE+RR R +GTI +SQ Y+ +L YG + + + TP++ V T AD P P L +Y+ ++ LMYA+ TR DIAYAV ++ +P E ++ CK + R LS ++G+ G S+ + G AD+ NV+DRKS +GY F L A + S KQ V+ SSTE
Sbjct: 1036 VWRLLKTIYGLKQSGREWNREFDRKLTSIQLVKTAVDHCVYYREHDGERT--WVTVWVDDLLILSTSRHEAERTKAEIEGLFDTKDLGEPRKIIGIEIRRDRGSGTITLSQLHYVETLLAKYGLTDAKPLATPMDPNV-TLRKVPADAPEAPAELRG---------------------QYQSIIGGLMYAAICTRPDIAYAVTTLSQYCSNPGPEHWSACKRVLRYLSGTRNYGLVYGNTSDSDEIVSTGYSDADYAANVDDRKSISGYAFMLGGAAYAWSSKKQSTVATSSTE 1305
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A6G0X2D0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2D0_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.640e-34 Identity = 104/292 (35.62%), Postives = 143/292 (48.97%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGRREKVDD---------FKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V +L+KSL GLKQ+ R WN T+D F++ I + +S D C+Y R G +LV +YVDDL++A K+ FK ALS C GIEV R P+G++ I Q +++ VL + + C+ V TP E + S E +G + +YR V LMY TR DIA AV A++ +E+P ++ K IFR L DFGI G + G ADW + R ST+GY F LN G +S S KQ+ V+ SSTE
Sbjct: 77 VLKLKKSLCGLKQAPRLWNETIDGFMLSIRIAKSNADHCIYVMRT--GSRVVLVSLYVDDLILASNCNKMMQATKEALSKRFKMTDLGALSY-CLGIEVMR-SPSGSVFIHQSKFLKSVLVKFNMQGCKPVKTPQESGQRLSKYMCPTTDEEKTDMGRI--------------------QYRSAVGCLMYLMVTTRPDIAVAVGVASQFLENPGQRHWSAVKRIFRYLKGTEDFGIKYSGSQDVCGY--TDADWVGDANTRHSTSGYCFMLNNGLVSWKSRKQRTVALSSTE 342
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 142 bits (357), Expect = 3.250e-34 Identity = 106/301 (35.22%), Postives = 150/301 (49.83%), Query Frame = 1
Query: 31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFS--RDDGGEIDILVV-VYVDDL--------------VIAGRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG-ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
V +L+KSLYGLKQS R WN+TLD FL G + DSCLY + G+I+ +++ ++VDD+ V G + KV+D ++ G+ ++R R + T+ ISQ Y+ VLK + EEC+ V TP+E P LSD R N EY+ ++ L Y +T TR D+A AV ++ M P E + K I R + L+FGIT K L G+ ADW + E R+ST+GY+F+++ IS CS KQ VS SSTE
Sbjct: 975 VCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHIL------GMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLE----------------PGKQFHELSD---------DERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTE 1244
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A329RB64_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RB64_9STRA) HSP 1 Score: 135 bits (340), Expect = 3.260e-34 Identity = 96/275 (34.91%), Postives = 140/275 (50.91%), Query Frame = 1
Query: 46 KSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIA-----GRREKVDDFKHNINL---ALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGIT---SGGKSNGHGLGGF-GADWTENVEDRKSTTGYVFKLNVGAIS 834
K+LYGL+QSGR WN+ L+ +L+ G RS T+ CLY+ D G +L++VYVDD+++A G++ DD + L GIEV + + ++ I+Q Y E+L+ +G+ + V P+E KVK V S + S EYR V LMY +TGTR D+A+AV Q +R + P + T K I R L+ + +GIT + + L G+ +DW + E RKSTTG+VF L GAIS
Sbjct: 57 KALYGLRQSGREWNSELNQWLLDRGYQRSMTEPCLYYRFD--GNTTMLILVYVDDIMVATNEEEGKKILFDDLDTAYGIKDQGLLTQYLGIEVAQ--TDDSVTINQSKYAHEILETFGYSQAHAVGNPMETKVKL-------------------------VPLGESEDADTSFEYRKAVGMLMYLATGTRPDLAFAVEQLSRFVAKPSAKHVGTLKRILRYLAGTVGYGITYERANEVPSSVALEGYCDSDWANDPESRKSTTGFVFTLAGGAIS 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19637.4989.1 >prot_H-paniculata_contig19637.4989.1 ID=prot_H-paniculata_contig19637.4989.1|Name=mRNA_H-paniculata_contig19637.4989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp FSPFSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLback to top mRNA from alignment at H-paniculata_contig19637:510..1409+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19637.4989.1 ID=mRNA_H-paniculata_contig19637.4989.1|Name=mRNA_H-paniculata_contig19637.4989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=900bp|location=Sequence derived from alignment at H-paniculata_contig19637:510..1409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19637:510..1409+ >mRNA_H-paniculata_contig19637.4989.1 ID=mRNA_H-paniculata_contig19637.4989.1|Name=mRNA_H-paniculata_contig19637.4989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig19637:510..1409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |