mRNA_H-paniculata_contig19637.4989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19637.4989.1
Unique NamemRNA_H-paniculata_contig19637.4989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.760e-38
Identity = 101/292 (34.59%), Postives = 148/292 (50.68%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIA---------GRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V +L+++LYGLKQS R WN T+D+F+  IG  +  TD C+Y  RDD   I   VV+YVDDL++A          +R   + F+ + +L   + C G+EV R   +G + + Q  ++  VL  +G ++C+ V TP +  +K +              G    D   GV             YR  V ++MY   GTR D+A AV   ++   DPC   +   K + R L      GI   G  +G  +G   ADW  ++E R+ST+GYVF LN G I+  S KQ+ V+ SSTE
Sbjct:  136 VCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMI--FVVLYVDDLILACNDTDLLAATKRALSERFEMS-DLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEG--------GCKHDDTMQGVP------------YRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGELIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTE 404          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT)

HSP 1 Score: 149 bits (376), Expect = 9.710e-37
Identity = 99/297 (33.33%), Postives = 161/297 (54.21%), Query Frame = 1
Query:   10 FSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVI-AGRREKVDDFKHNINL-----ALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGF-GADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            +S+D     RL+K+LYGLKQ+ R WN  L++ L  +G  +S  D+C+YF + DG  I ++V +YVDDL+I +  +  + D K  +N       L  A + + ++  +   +I + Q  Y++E+L  +G  +C+ V TP+    K S    AD P+ P+ +                 R   +  YR ++  LMY S  TR DI++AV++ ++   +P ++ +   K + R L     + +T   +SN  G+ G+  ADW  +++DR+ST+G+VF    GAIS CS KQQ VS SS E
Sbjct:  997 YSKDSSKCCRLKKALYGLKQASRVWNQKLEETLKRLGFQQSDYDTCVYF-KSDGNRI-LIVAIYVDDLLIFSSCKNWIMDVKRQLNTHFKMKELGEASYCLGMKIIKTGDSITLDQEHYVKEILTKFGMADCKPVTTPLNVSEKLS---KADCPNTPEEI-----------------REMQNVPYREVIGCLMYLSQCTRPDISFAVNKLSQFNSNPGMKHWLAAKHLLRYLQGTSSYKLTYHRESNMDGIVGYCDADWAADIDDRRSTSGFVFMSQGGAISWCSRKQQTVSLSSCE 1271          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 142 bits (359), Expect = 4.830e-36
Identity = 99/292 (33.90%), Postives = 146/292 (50.00%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGR--------REKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGF-GADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V RL+KS+YGL QSGR+WN   D  +  +GL ++  D+C+Y+   DG ++   V V+VDDL+I           R+++       ++   R   GIEV R R  GT+ +SQ  YI  +L  YGF     V TP+     T   +       PK        + A              EY+ M+  LMYA+  TR DIAYAV + ++   +P  E    CK +FR LS   ++G+  G + +G    G+  AD+  N++DRKS +GY + L   A +  S KQ  V+ S+TE
Sbjct:   31 VWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYYRERDGEQV--WVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQL------PKDAPPAAPSVRA--------------EYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFAWSSKKQTTVATSTTE 300          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A1Y1NIJ3_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NIJ3_PHOPY)

HSP 1 Score: 140 bits (353), Expect = 2.300e-35
Identity = 105/292 (35.96%), Postives = 144/292 (49.32%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGRREKVDDFKHNI--------NLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG-ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V RL++SLYGLKQS R+WNN L   LVG G  RS  D CLY  + +G    ILV  YVDDL+IA   EK+      I        +L   R   GIEV R    G   ISQ  YI +++K  G E+ +  P P++  V    P + DKP         L D               +TEY+ +V  L++ +  +R DIA  V   +R++ +P   D+N  + I R L   ++  +    + +  GL G+  ADW E   DRKS +G++FK   G IS    KQ  VS S+ E
Sbjct:   16 VCRLKRSLYGLKQSARSWNNKLHQVLVGDGFKRSEADPCLYSKQVNGKRCYILV--YVDDLIIASEEEKLITLAGRILERNFEIVSLGEVRNYVGIEVERDNA-GDFHISQRKYITDIVKSAGLEDAKSSPIPID--VGYFKPNTEDKP---------LPD---------------NTEYQKLVGKLLFVAVNSRPDIAAPVSILSRKLSNPTQRDWNELRRIVRYLKGSINLKLRLSNRGDDSGLVGYADADWAECRNDRKSNSGFLFKFCGGTISWACRKQTCVSLSTAE 278          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 145 bits (365), Expect = 2.830e-35
Identity = 98/292 (33.56%), Postives = 150/292 (51.37%), Query Frame = 1
Query:   37 RLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIA---------GRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEG--KVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            +L+++LYGLKQS R WN T+D+F+  IG  +   D C+Y  R+D   +   VV+YVDDL++A          +R   + F+ + +L   + C G+EV+R   +G + + Q  +++ VL  +G ++C+ V TP +   K+  S  +   K  E       + D+                 YR  V +LMY   GTR D+A +V   ++   DPC   +   K + R L      GI   G S+G  +G   ADW  ++E R+ST+GYV  LN G IS  S KQ+ V+ SSTE
Sbjct: 1008 KLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSATM--FVVIYVDDLILACNNKDLLAATKRALSERFEMS-DLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDE------TMKDV----------------PYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGELIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTE 1274          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 144 bits (362), Expect = 7.010e-35
Identity = 104/293 (35.49%), Postives = 150/293 (51.19%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVI---------AGRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG-ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V +L+K++YGLKQSGR WNNTLD+ L  +G  RS  ++CLY  +   G     + VYVDDL+I         A +R+    F+ + + +LS    G+E++R    G + + Q +YIR +LK YG + CR V TP++                P  L     D    V         N T+Y+ ++ SLMY +  +R DI +AV + ++R  +P  E  N  K I R LS  ++  I    +  G  + GF  ADW  +  DRKS +GY F L   A S  S KQ +V+ SSTE
Sbjct:  960 VLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFL-GLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLD----------------PGFLVCCKDDSCVKV---------NVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTE 1222          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A8H6XNZ2_9AGAR (Uncharacterized protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6XNZ2_9AGAR)

HSP 1 Score: 143 bits (360), Expect = 1.310e-34
Identity = 104/294 (35.37%), Postives = 146/294 (49.66%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGR-REKVDDFKHNI-------NLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG---ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V RL K++YGLKQSGR WN   D  L  I L ++  D C+Y+   DG      V V+VDDL+I    R + +  K  I       +L   R   GIE+RR R +GTI +SQ  Y+  +L  YG  + + + TP++  V T     AD P  P  L                       +Y+ ++  LMYA+  TR DIAYAV   ++   +P  E ++ CK + R LS   ++G+  G  S+   +   G   AD+  NV+DRKS +GY F L   A +  S KQ  V+ SSTE
Sbjct: 1036 VWRLLKTIYGLKQSGREWNREFDRKLTSIQLVKTAVDHCVYYREHDGERT--WVTVWVDDLLILSTSRHEAERTKAEIEGLFDTKDLGEPRKIIGIEIRRDRGSGTITLSQLHYVETLLAKYGLTDAKPLATPMDPNV-TLRKVPADAPEAPAELRG---------------------QYQSIIGGLMYAAICTRPDIAYAVTTLSQYCSNPGPEHWSACKRVLRYLSGTRNYGLVYGNTSDSDEIVSTGYSDADYAANVDDRKSISGYAFMLGGAAYAWSSKKQSTVATSSTE 1305          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A6G0X2D0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2D0_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.640e-34
Identity = 104/292 (35.62%), Postives = 143/292 (48.97%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIAGRREKVDD---------FKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V +L+KSL GLKQ+ R WN T+D F++ I + +S  D C+Y  R   G   +LV +YVDDL++A    K+           FK     ALS  C GIEV R  P+G++ I Q  +++ VL  +  + C+ V TP E   + S         E   +G +                    +YR  V  LMY    TR DIA AV  A++ +E+P    ++  K IFR L    DFGI   G  +  G     ADW  +   R ST+GY F LN G +S  S KQ+ V+ SSTE
Sbjct:   77 VLKLKKSLCGLKQAPRLWNETIDGFMLSIRIAKSNADHCIYVMRT--GSRVVLVSLYVDDLILASNCNKMMQATKEALSKRFKMTDLGALSY-CLGIEVMR-SPSGSVFIHQSKFLKSVLVKFNMQGCKPVKTPQESGQRLSKYMCPTTDEEKTDMGRI--------------------QYRSAVGCLMYLMVTTRPDIAVAVGVASQFLENPGQRHWSAVKRIFRYLKGTEDFGIKYSGSQDVCGY--TDADWVGDANTRHSTSGYCFMLNNGLVSWKSRKQRTVALSSTE 342          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 142 bits (357), Expect = 3.250e-34
Identity = 106/301 (35.22%), Postives = 150/301 (49.83%), Query Frame = 1
Query:   31 VRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFS--RDDGGEIDILVV-VYVDDL--------------VIAGRREKVDDFKHNINLALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGGFG-ADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE 879
            V +L+KSLYGLKQS R WN+TLD FL   G  +   DSCLY    +   G+I+ +++ ++VDD+              V  G + KV+D     ++       G+ ++R R + T+ ISQ  Y+  VLK +  EEC+ V TP+E                P      LSD           R  N  EY+ ++  L Y +T TR D+A AV   ++ M  P  E +   K I R +   L+FGIT   K     L G+  ADW  + E R+ST+GY+F+++   IS CS KQ  VS SSTE
Sbjct:  975 VCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHIL------GMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLE----------------PGKQFHELSD---------DERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTE 1244          
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Match: A0A329RB64_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RB64_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.260e-34
Identity = 96/275 (34.91%), Postives = 140/275 (50.91%), Query Frame = 1
Query:   46 KSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRDDGGEIDILVVVYVDDLVIA-----GRREKVDDFKHNINL---ALSRACWGIEVRRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADKPSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDIAYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGIT---SGGKSNGHGLGGF-GADWTENVEDRKSTTGYVFKLNVGAIS 834
            K+LYGL+QSGR WN+ L+ +L+  G  RS T+ CLY+  D  G   +L++VYVDD+++A     G++   DD      +    L     GIEV +   + ++ I+Q  Y  E+L+ +G+ +   V  P+E KVK                          V    S  +  S EYR  V  LMY +TGTR D+A+AV Q +R +  P  +   T K I R L+  + +GIT   +    +   L G+  +DW  + E RKSTTG+VF L  GAIS
Sbjct:   57 KALYGLRQSGREWNSELNQWLLDRGYQRSMTEPCLYYRFD--GNTTMLILVYVDDIMVATNEEEGKKILFDDLDTAYGIKDQGLLTQYLGIEVAQ--TDDSVTINQSKYAHEILETFGYSQAHAVGNPMETKVKL-------------------------VPLGESEDADTSFEYRKAVGMLMYLATGTRPDLAFAVEQLSRFVAKPSAKHVGTLKRILRYLAGTVGYGITYERANEVPSSVALEGYCDSDWANDPESRKSTTGFVFTLAGGAIS 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19637.4989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA2.760e-3834.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
W4VRP9_9DIPT9.710e-3733.33Putative retrovirus-related pol polyprotein from t... [more]
A0A146H7K8_MYCCL4.830e-3633.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1NIJ3_PHOPY2.300e-3535.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1FHK1_PYTOL2.830e-3533.56Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
W8BWJ0_CERCA7.010e-3535.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H6XNZ2_9AGAR1.310e-3435.37Uncharacterized protein n=1 Tax=Mycena sanguinolen... [more]
A0A6G0X2D0_9STRA1.640e-3435.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT3.250e-3435.22Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A329RB64_9STRA3.260e-3434.91Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19637contigH-paniculata_contig19637:510..1409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue4.5e-30
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size880
Cds size879
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.0971463-CDS-H-paniculata_contig19637:509..7711622929488.0971463-CDS-H-paniculata_contig19637:509..771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19637 510..771 +
1691480883.1731217-CDS-H-paniculata_contig19637:509..7711691480883.1731217-CDS-H-paniculata_contig19637:509..771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19637 510..771 +
1622929488.1129656-CDS-H-paniculata_contig19637:792..14091622929488.1129656-CDS-H-paniculata_contig19637:792..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19637 793..1409 +
1691480883.1831489-CDS-H-paniculata_contig19637:792..14091691480883.1831489-CDS-H-paniculata_contig19637:792..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19637 793..1409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19637.4989.1prot_H-paniculata_contig19637.4989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19637 510..1409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19637.4989.1

>prot_H-paniculata_contig19637.4989.1 ID=prot_H-paniculata_contig19637.4989.1|Name=mRNA_H-paniculata_contig19637.4989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
FSPFSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCL
YFSRDDGGEIDILVVVYVDDLVIAGRREKVDDFKHNINLALSRACWGIEV
RRYRPNGTIIISQGSYIREVLKIYGFEECRGVPTPVEGKVKTSAPKSADK
PSEPKSLGAVLSDIGAGVQESSSRRSGNSTEYRGMVRSLMYASTGTRTDI
AYAVHQAARRMEDPCLEDFNTCKLIFRCLSTVLDFGITSGGKSNGHGLGG
FGADWTENVEDRKSTTGYVFKLNVGAISGCSTKQQLVSWSSTE
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mRNA from alignment at H-paniculata_contig19637:510..1409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19637.4989.1 ID=mRNA_H-paniculata_contig19637.4989.1|Name=mRNA_H-paniculata_contig19637.4989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=900bp|location=Sequence derived from alignment at H-paniculata_contig19637:510..1409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAAG CCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACG ATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACTGATTCATGCTTG TACTTTTCCCGCGACGATGGGGGAGAGATAGACATTCTGGTGGTCGTCTA TGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGACTTCA AGCATAACATCAGTCAGCGTTTTAGGATGAAAGACTTGGCTCTCTCGCGC GCGTGTTGGGGAATAGAAGTACGACGTTACCGCCCTAATGGTACCATAAT CATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAATATACGGTTTTG AGGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGACTTCG GCACCCAAGTCGGCCGACAAGCCCTCCGAACCGAAGTCACTTGGAGCTGT ACTGTCAGATATAGGCGCAGGAGTACAAGAAAGCAGCAGCAGAAGAAGTG GCAATTCAACTGAATACAGAGGCATGGTAAGATCACTCATGTACGCCTCG ACAGGAACTAGAACTGATATAGCATACGCGGTACACCAGGCAGCACGTCG TATGGAGGACCCATGTCTGGAAGACTTCAATACATGCAAGCTCATTTTTC GCTGTCTCAGTACTGTGCTTGACTTCGGCATCACGTCCGGCGGTAAGAGT AATGGTCACGGTCTAGGAGGATTCGGTGCCGATTGGACGGAAAATGTCGA GGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAACGTTGGTGCGA TAAGTGGGTGCTCTACGAAGCAACAGTTAGTCTCGTGGTCCAGTACAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19637:510..1409+

>mRNA_H-paniculata_contig19637.4989.1 ID=mRNA_H-paniculata_contig19637.4989.1|Name=mRNA_H-paniculata_contig19637.4989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig19637:510..1409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAAG
CCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACG
ATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACTGATTCATGCTTG
TACTTTTCCCGCGACGATGGGGGAGAGATAGACATTCTGGTGGTCGTCTA
TGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGACTTCA
AGCATAACATCATTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCGCCG
CCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATA
ACACTCTTGACGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACT
GATTCATGCTTGTACTTTTCCCGCGACGATGGGGGAGAGATAGACATTCT
GGTGGTCGTCTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAG
TAGACGACTTCAAGCATAACATCAACTTGGCTCTCTCGCGCGCGTGTTGG
GGAATAGAAGTACGACGTTACCGCCCTAATGGTACCATAATCATCTCGCA
GGGTAGCTACATCCGCGAGGTACTAAAAATATACGGTTTTGAGGAGTGTC
GAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGACTTCGGCACCCAAG
TCGGCCGACAAGCCCTCCGAACCGAAGTCACTTGGAGCTGTACTGTCAGA
TATAGGCGCAGGAGTACAAGAAAGCAGCAGCAGAAGAAGTGGCAATTCAA
CTGAATACAGAGGCATGGTAAGATCACTCATGTACGCCTCGACAGGAACT
AGAACTGATATAGCATACGCGGTACACCAGGCAGCACGTCGTATGGAGGA
CCCATGTCTGGAAGACTTCAATACATGCAAGCTCATTTTTCGCTGTCTCA
GTACTGTGCTTGACTTCGGCATCACGTCCGGCGGTAAGAGTAATGGTCAC
GGTCTAGGAGGATTCGGTGCCGATTGGACGGAAAATGTCGAGGACCGAAA
GTCCACAACAGGATACGTTTTCAAGCTGAACGTTGGTGCGATAAGTGGGT
GCTCTACGAAGCAACAGTTAGTCTCGTGGTCCAGTACAGAGACTTGGCTC
TCTCGCGCGCGTGTTGGGGAATAGAAGTACGACGTTACCGCCCTAATGGT
ACCATAATCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAATATA
CGGTTTTGAGGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGA
AGACTTCGGCACCCAAGTCGGCCGACAAGCCCTCCGAACCGAAGTCACTT
GGAGCTGTACTGTCAGATATAGGCGCAGGAGTACAAGAAAGCAGCAGCAG
AAGAAGTGGCAATTCAACTGAATACAGAGGCATGGTAAGATCACTCATGT
ACGCCTCGACAGGAACTAGAACTGATATAGCATACGCGGTACACCAGGCA
GCACGTCGTATGGAGGACCCATGTCTGGAAGACTTCAATACATGCAAGCT
CATTTTTCGCTGTCTCAGTACTGTGCTTGACTTCGGCATCACGTCCGGCG
GTAAGAGTAATGGTCACGGTCTAGGAGGATTCGGTGCCGATTGGACGGAA
AATGTCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAACGT
TGGTGCGATAAGTGGGTGCTCTACGAAGCAACAGTTAGTCTCGTGGTCCA
GTACAGAG
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