mRNA_H-paniculata_contig18448.4538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18448.4538.1
Unique NamemRNA_H-paniculata_contig18448.4538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 4.530e-41
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1
Query:   28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            ++VWLAGARMELAAGNC HAQRLLNRAFQEVPEKSKSHVFLEC XXXXXXXXXXXXXXXXXRAR ETKSEWKVFLESVLLEIRANDWQRAA EA  ALKVHSGAG
Sbjct:  561 WKVWLAGARMELAAGNCLHAQRLLNRAFQEVPEKSKSHVFLECXXXXXXXXXXXXXXXXXXRARVETKSEWKVFLESVLLEIRANDWQRAATEAQEALKVHSGAG 665          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.250e-26
Identity = 63/105 (60.00%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            ++VWLAGAR EL AG    A+ LL RAF+EVP+KSK+HVFLECA       XXXXXX    +AR E + EWKVFLESVLLE+RA +W RA  +A +AL VH+G G
Sbjct:  953 WKVWLAGARTELGAGRVDVARALLRRAFREVPDKSKAHVFLECARLEEYVGXXXXXXSVLAQARVEARGEWKVFLESVLLEMRAGEWVRAIDQARSALSVHTGTG 1057          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A4D9D155_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D155_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.460e-20
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            ++VWLAGAR EL AG    A+ LL RAF EVP+KSK+H      XXXXXXXXXXXXXXXXX AR E + EWKVFLESVLLE+RA +W RA  +A +AL VH+G G
Sbjct: 1303 WKVWLAGARTELGAGRVDFARALLRRAFCEVPDKSKAHXXXXXXXXXXXXXXXXXXXXXXXXARVEARGEWKVFLESVLLEMRAGEWARAIDQARSALSVHTGTG 1407          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S0PWJ1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWJ1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.970e-20
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            C++VWLAG RMEL+AGN   A++L  RA   VPEK K+ V +ECA                 +AR E  S+WKV+LESVLLEIR+   +RA   A  AL++HSG G
Sbjct:  999 CWKVWLAGGRMELSAGNTEQARKLFLRAHNVVPEKGKAAVVMECARLEEFVGETEVARAVLRKARSEVGSDWKVWLESVLLEIRSGKQRRAIDVAKRALEMHSGTG 1104          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A6S8EA78_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EA78_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.350e-19
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   28 YQVWLAGARMELAAGNCSH-----------AQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            ++VWLAG R ELA  +  +           AQ+LLNRA  +VP+KS++ V LEC+                 +AR ETK EWKVFLESV+LE+R  +   A +EA +AL++HSG G
Sbjct:  712 WKVWLAGVRTELANADSKNKLTVDNAGVQKAQKLLNRALMDVPDKSRAQVLLECSRVEEYIGKIDKAREILAKARKETKHEWKVFLESVMLEVRCGNRDGALKEAKSALEIHSGTG 827          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S4F2X1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F2X1_CHRCT)

HSP 1 Score: 86.7 bits (213), Expect = 1.840e-17
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            ++VWL GAR EL     + +Q LL +A++E P K+++ V LE +                  AR   + EWKVFLESVLLE+R+ D QRA +EAH ALKVH G G
Sbjct: 1153 WKVWLGGARTELCHSQFAVSQALLEQAYKESPPKTRAIVMLEQSRLHELCGNAEQSRKLLRGARKTNRQEWKVFLESVLLELRSQDMQRALKEAHQALKVHRGTG 1257          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S1VNZ6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNZ6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.520e-17
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            C++V LAG RMELAAGN   A++L +RA + VPEK K    LEC+                 ++R E  S+WKV+LESVL+E+R  +  RA   A  AL++H+G G
Sbjct:  376 CWKVLLAGGRMELAAGNFEKARKLFHRAHRSVPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKVWLESVLVEVRGGEKDRAIDLAKRALQIHTGTG 481          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S1YIW7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIW7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.690e-17
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            C++V LAG RMELAAGN   A++L +RA + VPEK K    LEC+                 ++R E  S+WKV+LESVL+E+R  +  RA   A  AL++H+G G
Sbjct: 1236 CWKVLLAGGRMELAAGNFEKARKLFHRAHRSVPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKVWLESVLVEVRGGEKDRAIDLAKRALQIHTGTG 1341          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S4MSC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSC1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.060e-16
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            C++VWLAG RMEL AG    A++L  R+   VPEK ++ V LECA                 +AR    S+WKV+LES+ LE+R     RA R A  AL VHSG G
Sbjct:   81 CWKVWLAGGRMELMAGRTDEARQLFLRSHDVVPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKVWLESIFLEMRCGMRGRAIRLAQNALDVHSGTG 186          
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S4ITD3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITD3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.190e-16
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
            C++VWLAG RMEL AG    A++L  R+   VPEK ++ V LECA                 +AR    S+WKV+LES+ LE+R     RA R A  AL VHSG G
Sbjct: 1320 CWKVWLAGGRMELMAGRTDEARQLFLRSHDVVPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKVWLESIFLEMRCGMRGRAIRLAQNALDVHSGTG 1425          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN71_ECTSI4.530e-4192.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TFT0_9STRA4.250e-2660.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D155_9STRA1.460e-2064.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0PWJ1_9STRA1.970e-2048.11Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A6S8EA78_9STRA4.350e-1943.10Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S4F2X1_CHRCT1.840e-1744.76Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S1VNZ6_9STRA4.520e-1743.40Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1YIW7_9STRA4.690e-1743.40Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4MSC1_9STRA1.060e-1644.34Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4ITD3_9STRA1.190e-1644.34Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18448contigH-paniculata_contig18448:3310..4990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue4e-35
Seed eggNOG ortholog2880.D8LN71
Hectar predicted targeting categoryother localisation
EggNOG OGs28JG8@1,2QRVD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size342
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18448.4538.1prot_H-paniculata_contig18448.4538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18448 3310..4990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.7115448-CDS-H-paniculata_contig18448:3309..34231622929429.7115448-CDS-H-paniculata_contig18448:3309..3423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18448 3310..3423 +
1691480857.6869402-CDS-H-paniculata_contig18448:3309..34231691480857.6869402-CDS-H-paniculata_contig18448:3309..3423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18448 3310..3423 +
1622929429.7212374-CDS-H-paniculata_contig18448:4135..42641622929429.7212374-CDS-H-paniculata_contig18448:4135..4264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18448 4136..4264 +
1691480857.701522-CDS-H-paniculata_contig18448:4135..42641691480857.701522-CDS-H-paniculata_contig18448:4135..4264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18448 4136..4264 +
1622929429.7304807-CDS-H-paniculata_contig18448:4891..49901622929429.7304807-CDS-H-paniculata_contig18448:4891..4990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18448 4892..4990 +
1691480857.7136855-CDS-H-paniculata_contig18448:4891..49901691480857.7136855-CDS-H-paniculata_contig18448:4891..4990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18448 4892..4990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18448.4538.1

>prot_H-paniculata_contig18448.4538.1 ID=prot_H-paniculata_contig18448.4538.1|Name=mRNA_H-paniculata_contig18448.4538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MCSALVVDCYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFL
ECARLEEFTGNLECARQILGRARGETKSEWKVFLESVLLEIRANDWQRAA
REAHAALKVHSGAG
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mRNA from alignment at H-paniculata_contig18448:3310..4990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18448.4538.1 ID=mRNA_H-paniculata_contig18448.4538.1|Name=mRNA_H-paniculata_contig18448.4538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-paniculata_contig18448:3310..4990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTCTGCTCTTGTCGTTGATTGTTACCAGGTATGGCTAGCTGGGGC GAGGATGGAATTGGCCGCTGGAAACTGTTCGCACGCACAGCGCCTACTAA ATCGAGCATTTCAGGTGAGAGAGCTGAGTAACATGGAGAGCTAGGGCAGC ACAATTACGAGACAATATGCTATTCATATTATTTATCGACATGGCATTGT CAAATTGTGTAGTGTCTGCCCCCTTTTAATCATTTGGGAAACGGATTTCG TAAAGGCCGAAATACAGATTTACTAACGACTAGTCGTGAATAATGGATAA TGGTCAATACGTCGACATGAAGCCTAACTAGCTCTAGACAGCTGGTGAGT AGTGCATAATCTCAGCTCCATTTGGAACAGTAGAGGATGGAAGATTGATT CTATTGGCATTTTTGTATCGAATAATGTGGTATATATTGGAATATTCCAT ATCTTTTTGGCCATGCTAGCAAGAAGTCTGTACAATGTTGGGTATGTTTT ATCCCTGGCTCTTGCTCGTTCCATCAAAGAGTTGTTGTTGTACGTCTGTG TTCCGTCATGTTCCATAGGATGCCGTCTGTCTCTCGATGTAATAATATTG TTCTCAACTTGGGAGCATTTCTCTACCAAAAGTATAATTTCGTTGCTCTT CCGCCGTGCTGCTGTATTCAAGTCTCCTTTATCATGTCATGTTCCACATT CATGTTGCATATGTGTCATGCCTCATGCTAATTTTTTAATCGTTTCTCGT CTCTCTCCAATCCTTGTCGTGACCCTGTAATGTAATGACAATGGTGATGA TGGTGATTGTGACAACGGGGATCCAGGAAGTACCCGAGAAAAGCAAAAGC CACGTGTTCTTGGAGTGCGCCAGGCTGGAGGAATTCACGGGAAACTTGGA GTGCGCCAGGCAAATACTGGGAAGGGCCAGAGGGGAGACCAAGAGCGAGT GGAAGGTGCGTGTTACTATCGTTATGACTCATCATATTTTATCATGTTTG CCTTCCGGTAATTTGTAGACCGGGACGTGGCTGTCGGGAAGTGAAAGGCA ATCGTAATTAATATCCATGGTTGTGGTGTTCGACTTGTATATACCCTAAA ACACTGTCACAAGGCCCCGAGGAGCGAGTGATTCTCTTTTTGCTGAAAAT ATTTTGCACGGGTATTATGAATGCCCACGGGGTTCTAGTTGAAAACGTGA CTTCGTTTGGGAGTTCCGGGGCGACAGTGAGAACGCATTCCGGGCCGCGT GCAAAACAGGATCCAGCAATCCTCTCGGGAGTGAGTGTTCTCTACGGGTG CATGTCTTTATTTTATTTGTTTTTTTCAATTCGAAATGACTGAGAAACGG CCTTCTCTAACATTTTTGTTCTTCTTTCGGGAGGTATGAAAACATAAACT TGCTATTTTTCTGCATGTTGCCATTTATTTTCCAAATTAATTTCGCGTGT TTTGTATTAAAAATCAAAGTTCATGTACTGAATAAATGGTTGTGAGGCAT AGTCAATATTCATGTTGTAACATTTATTTGTTGTTCAGTGTCACGTTTTT TAATCGTTTTTCATTTATTTATTTATTTCAAGGTGTTCCTGGAGAGCGTA CTGCTGGAAATTCGAGCAAACGATTGGCAAAGGGCCGCAAGGGAGGCACA TGCAGCGCTCAAGGTACACTCCGGAGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18448:3310..4990+

>mRNA_H-paniculata_contig18448.4538.1 ID=mRNA_H-paniculata_contig18448.4538.1|Name=mRNA_H-paniculata_contig18448.4538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig18448:3310..4990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTCTGCTCTTGTCGTTGATTGTTACCAGGTATGGCTAGCTGGGGC
GAGGATGGAATTGGCCGCTGGAAACTGTTCGCACGCACAGCGCCTACTAA
ATCGAGCATTTCAGATGTGTTCTGCTCTTGTCGTTGATTGTTACCAGGTA
TGGCTAGCTGGGGCGAGGATGGAATTGGCCGCTGGAAACTGTTCGCACGC
ACAGCGCCTACTAAATCGAGCATTTCAGGAAGTACCCGAGAAAAGCAAAA
GCCACGTGTTCTTGGAGTGCGCCAGGCTGGAGGAATTCACGGGAAACTTG
GAGTGCGCCAGGCAAATACTGGGAAGGGCCAGAGGGGAGACCAAGAGCGA
GTGGAAGGAAGTACCCGAGAAAAGCAAAAGCCACGTGTTCTTGGAGTGCG
CCAGGCTGGAGGAATTCACGGGAAACTTGGAGTGCGCCAGGCAAATACTG
GGAAGGGCCAGAGGGGAGACCAAGAGCGAGTGGAAGGTGTTCCTGGAGAG
CGTACTGCTGGAAATTCGAGCAAACGATTGGCAAAGGGCCGCAAGGGAGG
CACATGCAGCGCTCAAGGTACACTCCGGAGCGGGAGTGTTCCTGGAGAGC
GTACTGCTGGAAATTCGAGCAAACGATTGGCAAAGGGCCGCAAGGGAGGC
ACATGCAGCGCTCAAGGTACACTCCGGAGCGGGA
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