mRNA_H-paniculata_contig18448.4538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI) HSP 1 Score: 154 bits (388), Expect = 4.530e-41 Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1
Query: 28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
++VWLAGARMELAAGNC HAQRLLNRAFQEVPEKSKSHVFLEC XXXXXXXXXXXXXXXXXRAR ETKSEWKVFLESVLLEIRANDWQRAA EA ALKVHSGAG
Sbjct: 561 WKVWLAGARMELAAGNCLHAQRLLNRAFQEVPEKSKSHVFLECXXXXXXXXXXXXXXXXXXRARVETKSEWKVFLESVLLEIRANDWQRAATEAQEALKVHSGAG 665
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA) HSP 1 Score: 111 bits (277), Expect = 4.250e-26 Identity = 63/105 (60.00%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
++VWLAGAR EL AG A+ LL RAF+EVP+KSK+HVFLECA XXXXXX +AR E + EWKVFLESVLLE+RA +W RA +A +AL VH+G G
Sbjct: 953 WKVWLAGARTELGAGRVDVARALLRRAFREVPDKSKAHVFLECARLEEYVGXXXXXXSVLAQARVEARGEWKVFLESVLLEMRAGEWVRAIDQARSALSVHTGTG 1057
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A4D9D155_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D155_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.460e-20 Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 1
Query: 28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
++VWLAGAR EL AG A+ LL RAF EVP+KSK+H XXXXXXXXXXXXXXXXX AR E + EWKVFLESVLLE+RA +W RA +A +AL VH+G G
Sbjct: 1303 WKVWLAGARTELGAGRVDFARALLRRAFCEVPDKSKAHXXXXXXXXXXXXXXXXXXXXXXXXARVEARGEWKVFLESVLLEMRAGEWARAIDQARSALSVHTGTG 1407
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S0PWJ1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWJ1_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.970e-20 Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
C++VWLAG RMEL+AGN A++L RA VPEK K+ V +ECA +AR E S+WKV+LESVLLEIR+ +RA A AL++HSG G
Sbjct: 999 CWKVWLAGGRMELSAGNTEQARKLFLRAHNVVPEKGKAAVVMECARLEEFVGETEVARAVLRKARSEVGSDWKVWLESVLLEIRSGKQRRAIDVAKRALEMHSGTG 1104
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A6S8EA78_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EA78_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.350e-19 Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 28 YQVWLAGARMELAAGNCSH-----------AQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
++VWLAG R ELA + + AQ+LLNRA +VP+KS++ V LEC+ +AR ETK EWKVFLESV+LE+R + A +EA +AL++HSG G
Sbjct: 712 WKVWLAGVRTELANADSKNKLTVDNAGVQKAQKLLNRALMDVPDKSRAQVLLECSRVEEYIGKIDKAREILAKARKETKHEWKVFLESVMLEVRCGNRDGALKEAKSALEIHSGTG 827
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S4F2X1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F2X1_CHRCT) HSP 1 Score: 86.7 bits (213), Expect = 1.840e-17 Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 28 YQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
++VWL GAR EL + +Q LL +A++E P K+++ V LE + AR + EWKVFLESVLLE+R+ D QRA +EAH ALKVH G G
Sbjct: 1153 WKVWLGGARTELCHSQFAVSQALLEQAYKESPPKTRAIVMLEQSRLHELCGNAEQSRKLLRGARKTNRQEWKVFLESVLLELRSQDMQRALKEAHQALKVHRGTG 1257
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S1VNZ6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNZ6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 4.520e-17 Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
C++V LAG RMELAAGN A++L +RA + VPEK K LEC+ ++R E S+WKV+LESVL+E+R + RA A AL++H+G G
Sbjct: 376 CWKVLLAGGRMELAAGNFEKARKLFHRAHRSVPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKVWLESVLVEVRGGEKDRAIDLAKRALQIHTGTG 481
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S1YIW7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIW7_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 4.690e-17 Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
C++V LAG RMELAAGN A++L +RA + VPEK K LEC+ ++R E S+WKV+LESVL+E+R + RA A AL++H+G G
Sbjct: 1236 CWKVLLAGGRMELAAGNFEKARKLFHRAHRSVPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKVWLESVLVEVRGGEKDRAIDLAKRALQIHTGTG 1341
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S4MSC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSC1_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.060e-16 Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
C++VWLAG RMEL AG A++L R+ VPEK ++ V LECA +AR S+WKV+LES+ LE+R RA R A AL VHSG G
Sbjct: 81 CWKVWLAGGRMELMAGRTDEARQLFLRSHDVVPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKVWLESIFLEMRCGMRGRAIRLAQNALDVHSGTG 186
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Match: A0A7S4ITD3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITD3_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.190e-16 Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 25 CYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLECAXXXXXXXXXXXXXXXXXRARGETKSEWKVFLESVLLEIRANDWQRAAREAHAALKVHSGAG 342
C++VWLAG RMEL AG A++L R+ VPEK ++ V LECA +AR S+WKV+LES+ LE+R RA R A AL VHSG G
Sbjct: 1320 CWKVWLAGGRMELMAGRTDEARQLFLRSHDVVPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKVWLESIFLEMRCGMRGRAIRLAQNALDVHSGTG 1425 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18448.4538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18448.4538.1 >prot_H-paniculata_contig18448.4538.1 ID=prot_H-paniculata_contig18448.4538.1|Name=mRNA_H-paniculata_contig18448.4538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp MCSALVVDCYQVWLAGARMELAAGNCSHAQRLLNRAFQEVPEKSKSHVFLback to top mRNA from alignment at H-paniculata_contig18448:3310..4990+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18448.4538.1 ID=mRNA_H-paniculata_contig18448.4538.1|Name=mRNA_H-paniculata_contig18448.4538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-paniculata_contig18448:3310..4990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18448:3310..4990+ >mRNA_H-paniculata_contig18448.4538.1 ID=mRNA_H-paniculata_contig18448.4538.1|Name=mRNA_H-paniculata_contig18448.4538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig18448:3310..4990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |