prot_H-paniculata_contig10626.405.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig10626.405.1
Unique Name	prot_H-paniculata_contig10626.405.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	452

Homology

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BLAST of mRNA_H-paniculata_contig10626.405.1 vs. uniprot
Match: D8LD29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD29_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 3.480e-114
Identity = 259/399 (64.91%), Postives = 306/399 (76.69%), Query Frame = 0

Query:   56 AEKIKEEAIILHRAGEYEAAAREFSRAAELLERATMGGESTSASSLNAVRLSLAAAQLKSGDLQGAEATCSQLLKTPGLARALRQKASYRRALARKRQAVQQGSEQLESTSGLARKAYRDAYLAVKLSQGEAGANPAEGDAQAVGLLAEMEDDTWAHGQLSDADRVAAKTKADKHLAALASIS--ATVSPGNSSGEMFDMFAGDSXXXXXXXXXXXXXXXXXXXXXXXX-LMDMLGTGAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGAGA-GMDKKQMLKTAKKMSKVVKKQLRNPGTQQFVCSFLKKAEPGTIKSLAEAAGVPVGDE-IVSRVSTYLKKADGKMLESWIDWGEIASGVYRRVSQLSVILSRGTALAGLWLVWVWIKACFAPVVLNKA 449
            A +IKEEA  LHRAG+YE AA EF+RAA+LLE A +G     A  L+A+RLSLAA+QLKSGDL+GAEATCSQLLKTPGL R LRQKASYRR ++RKRQA   G+    + S LA++AYRDAYL+V+LS     A PA GDA+A+GL+AEME   W  G L++ADR AA++KADKHL ALAS++  A  +P  S G +FDMF G  XXXXXXXXXX XXXXXXXX XXX  LMDM+G G G XXXXXXXXXXXXXXX   XXX     G GA G D KQMLK AKKMSK VKKQLRNPGTQQ VC+FL +A+P T+ SLA  AG P  +E IV+ +S YL+KADGK LESWID+GEIA+  +RR+ Q SV+ SRG ALAG+WLVWVW++ACFAP+V+ KA
Sbjct:   45 ARRIKEEATALHRAGQYEEAAEEFARAAQLLEEAGVGLAPPPA--LSAIRLSLAASQLKSGDLRGAEATCSQLLKTPGLPRPLRQKASYRRGMSRKRQAEAAGAG--AAGSRLAQRAYRDAYLSVELSNDGGAAGPAAGDAKALGLMAEMEAGDWGQGWLTEADRSAARSKADKHLTALASMAPPARSTPAGSGG-LFDMFGGGXXXXXXXXXXXGXXXXXXXXLXXXPGLMDMMGAGTGXXXXXXXXXXXXXXXXLMGXXXAKSGLGGGADGPDPKQMLKMAKKMSKGVKKQLRNPGTQQMVCAFLNQAKPETLMSLATTAGFPGANEAIVNGLSGYLQKADGKTLESWIDYGEIATCAFRRLKQFSVLWSRGIALAGIWLVWVWVRACFAPIVVQKA 438

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig10626.405.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig10626.405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LD29_ECTSI	3.480e-114	64.91	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..154
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 23..40
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 426..446
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..40
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 447..451
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 41..425
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..22
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.615
None	No IPR available	TMHMM	TMhelix		coord: 424..446
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 46..160 e-value: 9.0E-10 score: 40.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 54..160

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig10626	contig	H-paniculata_contig10626:1773..8074 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10626.405.1	mRNA_H-paniculata_contig10626.405.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig10626 1758..8392 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig10626.405.1 ID=prot_H-paniculata_contig10626.405.1|Name=mRNA_H-paniculata_contig10626.405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=452bp
MSRRHRVAAVLSAVALAWCPCSVSEAFAMGGAMGSATGMGAGASPQSSFS
PLRGDAEKIKEEAIILHRAGEYEAAAREFSRAAELLERATMGGESTSASS
LNAVRLSLAAAQLKSGDLQGAEATCSQLLKTPGLARALRQKASYRRALAR
KRQAVQQGSEQLESTSGLARKAYRDAYLAVKLSQGEAGANPAEGDAQAVG
LLAEMEDDTWAHGQLSDADRVAAKTKADKHLAALASISATVSPGNSSGEM
FDMFAGDSGGLGSLGGAGMGGFPGLGGGSGPGLMDMLGTGAGEGGRGGVG
SLMNMLMGGAGGTGGAGGRGAGAGMDKKQMLKTAKKMSKVVKKQLRNPGT
QQFVCSFLKKAEPGTIKSLAEAAGVPVGDEIVSRVSTYLKKADGKMLESW
IDWGEIASGVYRRVSQLSVILSRGTALAGLWLVWVWIKACFAPVVLNKAK
A*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf