mRNA_H-paniculata_contig10626.405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10626.405.1 vs. uniprot
Match: D8LD29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD29_ECTSI) HSP 1 Score: 350 bits (898), Expect = 3.520e-112 Identity = 259/399 (64.91%), Postives = 306/399 (76.69%), Query Frame = 1 Query: 181 AEKIKEEAIILHRAGEYEAAAREFSRAAELLERATMGGESTSASSLNAVRLSLAAAQLKSGDLQGAEATCSQLLKTPGLARALRQKASYRRALARKRQAVQQGSEQLESTSGLARKAYRDAYLAVKLSQGEAGANPAEGDAQAVGLLAEMEDDTWAHGQLSDADRVAAKTKADKHLAALASIS--ATVSPGNSSGEMFDMFAGDSXXXXXXXXXXXXXXXXXXXXXXXX-LMDMLGTGAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGAGA-GMDKKQMLKTAKKMSKVVKKQLRNPGTQQFVCSFLKKAEPGTIKSLAEAAGVPVGDE-IVSRVSTYLKKADGKMLESWIDWGEIASGVYRRVSQLSVILSRGTALAGLWLVWVWIKACFAPVVLNKA 1362
A +IKEEA LHRAG+YE AA EF+RAA+LLE A +G A L+A+RLSLAA+QLKSGDL+GAEATCSQLLKTPGL R LRQKASYRR ++RKRQA G+ + S LA++AYRDAYL+V+LS A PA GDA+A+GL+AEME W G L++ADR AA++KADKHL ALAS++ A +P S G +FDMF G XXXXXXXXXX XXXXXXXX XXX LMDM+G G G XXXXXXXXXXXXXXX XXX G GA G D KQMLK AKKMSK VKKQLRNPGTQQ VC+FL +A+P T+ SLA AG P +E IV+ +S YL+KADGK LESWID+GEIA+ +RR+ Q SV+ SRG ALAG+WLVWVW++ACFAP+V+ KA
Sbjct: 45 ARRIKEEATALHRAGQYEEAAEEFARAAQLLEEAGVGLAPPPA--LSAIRLSLAASQLKSGDLRGAEATCSQLLKTPGLPRPLRQKASYRRGMSRKRQAEAAGAG--AAGSRLAQRAYRDAYLSVELSNDGGAAGPAAGDAKALGLMAEMEAGDWGQGWLTEADRSAARSKADKHLTALASMAPPARSTPAGSGG-LFDMFGGGXXXXXXXXXXXGXXXXXXXXLXXXPGLMDMMGAGTGXXXXXXXXXXXXXXXXLMGXXXAKSGLGGGADGPDPKQMLKMAKKMSKGVKKQLRNPGTQQMVCAFLNQAKPETLMSLATTAGFPGANEAIVNGLSGYLQKADGKTLESWIDYGEIATCAFRRLKQFSVLWSRGIALAGIWLVWVWVRACFAPIVVQKA 438 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10626.405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10626.405.1 >prot_H-paniculata_contig10626.405.1 ID=prot_H-paniculata_contig10626.405.1|Name=mRNA_H-paniculata_contig10626.405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=452bp MSRRHRVAAVLSAVALAWCPCSVSEAFAMGGAMGSATGMGAGASPQSSFSback to top mRNA from alignment at H-paniculata_contig10626:1758..8392+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10626.405.1 ID=mRNA_H-paniculata_contig10626.405.1|Name=mRNA_H-paniculata_contig10626.405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6635bp|location=Sequence derived from alignment at H-paniculata_contig10626:1758..8392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10626:1758..8392+ >mRNA_H-paniculata_contig10626.405.1 ID=mRNA_H-paniculata_contig10626.405.1|Name=mRNA_H-paniculata_contig10626.405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2712bp|location=Sequence derived from alignment at H-paniculata_contig10626:1758..8392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |