mRNA_H-paniculata_contig172.4011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.360e-23 Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + MV+WKA + +W T E G Y T + G+ + GGG ++ SRTQ+ + T+EA Y+A+++++KE+LFLRQ F++P I + +DN G I++ +N ++ ++HIDV HH I + V+ + IT+V + QHAD LTKA+ + SF HR +MN+
Sbjct: 172 DIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISK--ESFALHRDFVMNL 375
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 110 bits (274), Expect = 6.360e-23 Identity = 69/206 (33.50%), Postives = 109/206 (52.91%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + MV+WKA + +W T E G Y T + G+ + GGG ++ SRTQ+ + T+EA Y+A+++++KE+LFLRQ F++P I + +DN G I++ +N ++ ++HIDV HH I + V+ + IT V QHAD LTKA+ + SF HR +MN+
Sbjct: 117 DIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISK--ESFALHRDFVMNL 320
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 109 bits (272), Expect = 6.060e-22 Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + MV+WKA + +W T E G Y T + G+ + GGG ++ SRTQ+ + T+EA Y+A+++++KE+LFLRQ F++P I + +DN G I++ +N ++ ++HIDV HH I + V+ + IT+V QHAD LTKA+ + S HR +MN+
Sbjct: 234 DIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISK--ESLGLHRDFVMNL 437
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 7.190e-22 Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + MV+WKA + +W T E G Y + G+ + GGG ++ SRTQ+ + T+EA Y+A+++++KE+LFLRQ F++P I + +DN G I++ +N ++ ++HIDV HH I + V+ + IT+V E QHAD LTKA+ + SF HR +MN+
Sbjct: 1268 DIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISK--ESFALHRDFVMNL 1471
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.670e-21 Identity = 69/206 (33.50%), Postives = 109/206 (52.91%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + MV+WKA + +W T E G Y T + G+ + GGG + SRTQ+ + T+EA Y+A+++++KE+LFLRQ F++P I + ++N G I++ +N + ++HIDV HH I + V+ + IT+V E QHAD LTKA+ + SF HR +MN+
Sbjct: 1227 DIANAVRAVARYCASPKMVHWKAAVGILGYVRRTSWMGITFERGVVTGMGMQVFVDADYASKATDRRSVSGGLVMCGGGCATWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFENNQGAIQIAHNPTTKSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISK--ESFALHRDLVMNL 1430
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.370e-21 Identity = 74/223 (33.18%), Postives = 116/223 (52.02%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPR--AWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNVV*KNINVRKNTISGV 956
DI++AV +C + MV+WKA L G R +W T E G Y + G+ + GGG ++ SRTQ+ + T+EA Y+A+++++K +LFLRQ F++P I + +DN G I++ N ++ ++HIDV HH I + V + IT+V E QHAD LTKA+ + SF HR +MN+ + + R +T G+
Sbjct: 61 DIANAVRAVARYCASPQMVHWKAA--LGILGYVRWTSWMGITFERGVVTGMSLQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKGVLFLRQGWRFMLPDAGMPCIPVFEDNQGAIQIAQNPITNSNSKHIDVRHHFIRELVMRKEISITHVTSEFQHADFLTKAISK--ESFALHRYFVMNLHRRTVQYRTDTQRGL 279
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 102 bits (254), Expect = 3.450e-21 Identity = 68/206 (33.01%), Postives = 108/206 (52.43%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKA-VKILHTCGGPRAWGLPTAETGTAG-SRCGYTQPRTALHVR-----TPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + +V+W A + IL +G+ G S GY A + G+ GGG +S SRTQ+ + T+EA Y+AL E+VK +LFLRQ F++P + I + +DN G I++ N S+ ++HIDV HH + + V+ + + +V Q AD LTK+L + +F+ HR +MN+
Sbjct: 12 DIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSK--DAFESHRDFVMNL 215
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE) HSP 1 Score: 107 bits (268), Expect = 8.780e-21 Identity = 68/206 (33.01%), Postives = 108/206 (52.43%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGSR-------CGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI+ AV +C + MV+WKA + +W T E G Y + G+ + GGG ++ SRTQ+ + T+E+ Y+A+++++KE+LFLRQ F++P I + +DN G I++ N ++ ++HIDV HH I + V+ + IT+V E QHAD LTKA+ + SF HR +MN+
Sbjct: 624 DIAKAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISK--ESFALHRDFVMNM 827
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5JGZ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ8_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.290e-20 Identity = 66/206 (32.04%), Postives = 107/206 (51.94%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKAVKILHTCGGPRAWGLPTAETGTAGS-------RCGYTQPRTALHVRTPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV +C + MV+WKA + +W T E G Y T + G+ + GGG ++ SRTQ+ + T+EA YMA+++++KE+LFLRQ +P I + +D G I++ +N ++ ++HIDV HH+I + V+ + T+V + QHAD L KA+ + SF HR +MN+
Sbjct: 214 DIANAVRAVARYCASPKMVHWKATLGVLGYVWTTSWMGITFERGVVTRMRMQVFVNADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYMAIADVLKEVLFLRQVWRCTLPDAGMPCIPVFEDTHGAIQIAHNPITNSNSKHIDVRHHLIRELVERKEISFTHVPTQFQHADFLAKAISK--DSFALHRDFVMNL 417
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.450e-20 Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 3
Query: 321 DISSAVCTAVIFCENLGMVYWKA-VKILHTCGGPRAWGLPTAETGTAG-SRCGYTQPRTALHVR-----TPGVRLLGGGVIS--SRTQETTAVDTSEAMYMALSEIVKELLFLRQAQAFIMPTLKSYLIDIMQDNPGTIKMTNNKHSSKRTRHIDVNHHIIHDAVDAGRVLITYVKIEGQHADVLTKALEQALSSFKKHRSALMNV 911
DI++AV T +C + +V W A + IL +G+ G S GY A + G+ GGG +S SRTQ+ + T+EA Y+AL ++VKE+LFLRQ F++P + I I +DN G I++ N S+ ++H+DV HH++ + V+ + + +V Q AD LTK+L + +F+ HR +MN+
Sbjct: 225 DIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPK--DAFESHREFVMNL 428 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig172.4011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig172.4011.1 >prot_H-paniculata_contig172.4011.1 ID=prot_H-paniculata_contig172.4011.1|Name=mRNA_H-paniculata_contig172.4011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp MVYWKAVKILHTCGGPRAWGLPTAETGTAGSRCGYTQPRTALHVRTPGVRback to top mRNA from alignment at H-paniculata_contig172:12974..14683+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig172.4011.1 ID=mRNA_H-paniculata_contig172.4011.1|Name=mRNA_H-paniculata_contig172.4011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig172:12974..14683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig172:12974..14683+ >mRNA_H-paniculata_contig172.4011.1 ID=mRNA_H-paniculata_contig172.4011.1|Name=mRNA_H-paniculata_contig172.4011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig172:12974..14683+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |