Homology
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match:
D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)
HSP 1 Score: 67.8 bits (164), Expect = 6.590e-12
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 1 AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
AKR+ L VD KL +AE+R K++EMKGLERTLV+VLVEQQKKLL LLSE G
Sbjct: 2185 AKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSETG 2237
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match:
A0A7S2G7M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7M7_9STRA)
HSP 1 Score: 49.7 bits (117), Expect = 8.730e-6
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 4 KRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
KR ++ +D K+ A AE R K+D +K LER +VEVLV+QQKKLL +L++ G
Sbjct: 121 KRDDISVLDKKIAACAERRQDKEDALKDLERQIVEVLVDQQKKLLAILTDAG 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.59e-12 / Id = 69.81 Expect = 8.73e-6 / Id = 51.92 Sequence D8LMX2_ECTSI A0A7S2G7M7_9STRA
Match Name E-value Identity Description
D8LMX2_ECTSI 6.590e-12 69.81 Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more] A0A7S2G7M7_9STRA 8.730e-6 51.92 Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 68.6 Seed ortholog evalue 1e-09 Seed eggNOG ortholog 2880.D8LMX2 Hectar predicted targeting category no signal peptide or anchor EggNOG OGs 28KYD@1,2QTF4@2759 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 1 Model size 159 Cds size 159 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1061.398.1
>prot_H-paniculata_contig1061.398.1 ID=prot_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLS back to top mRNA from alignment at H-paniculata_contig1061:27903..28061+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAACAGCCATGGC
TGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGGAGAGGACAC
TGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAACTGCTCAGT
GAGGTGGGT back to top Coding sequence (CDS) from alignment at H-paniculata_contig1061:27903..28061+
>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top