mRNA_H-paniculata_contig1061.398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig1061.398.1
Unique Name	mRNA_H-paniculata_contig1061.398.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 6.590e-12
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1

Query:    1 AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
            AKR+ L  VD KL  +AE+R  K++EMKGLERTLV+VLVEQQKKLL LLSE G
Sbjct: 2185 AKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSETG 2237

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BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match: A0A7S2G7M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7M7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.730e-6
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1

Query:    4 KRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
            KR  ++ +D K+ A AE R  K+D +K LER +VEVLV+QQKKLL +L++ G
Sbjct:  121 KRDDISVLDKKIAACAERRQDKEDALKDLERQIVEVLVDQQKKLLAILTDAG 172

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D8LMX2_ECTSI	6.590e-12	69.81	Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re...	[more]
A0A7S2G7M7_9STRA	8.730e-6	51.92	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1061	contig	H-paniculata_contig1061:27903..28061 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	68.6
Seed ortholog evalue	1e-09
Seed eggNOG ortholog	2880.D8LMX2
Hectar predicted targeting category	no signal peptide or anchor
EggNOG OGs	28KYD@1,2QTF4@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	159
Cds size	159
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928766.1962047-CDS-H-paniculata_contig1061:27902..28061	1622928766.1962047-CDS-H-paniculata_contig1061:27902..28061	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1061 27903..28061 +
1691480611.163327-CDS-H-paniculata_contig1061:27902..28061	1691480611.163327-CDS-H-paniculata_contig1061:27902..28061	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1061 27903..28061 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1061.398.1	prot_H-paniculata_contig1061.398.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig1061 27903..28061 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig1061:27903..28061+
coding sequence from alignment at H-paniculata_contig1061:27903..28061+

protein sequence of mRNA_H-paniculata_contig1061.398.1

>prot_H-paniculata_contig1061.398.1 ID=prot_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLS
EVG

mRNA from alignment at H-paniculata_contig1061:27903..28061+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAACAGCCATGGC
TGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGGAGAGGACAC
TGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAACTGCTCAGT
GAGGTGGGT

Coding sequence (CDS) from alignment at H-paniculata_contig1061:27903..28061+

>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAACAGCCATGGC
TGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGGAGAGGACAC
TGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAACTGCTCAGT
GAGGTGGGTGCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAAC
AGCCATGGCTGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGG
AGAGGACACTGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAA
CTGCTCAGTGAGGTGGGT