mRNA_H-paniculata_contig1061.398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1061.398.1
Unique NamemRNA_H-paniculata_contig1061.398.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 6.590e-12
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
            AKR+ L  VD KL  +AE+R  K++EMKGLERTLV+VLVEQQKKLL LLSE G
Sbjct: 2185 AKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSETG 2237
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BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Match: A0A7S2G7M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7M7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.730e-6
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 KRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLSEVG 159
            KR  ++ +D K+ A AE R  K+D +K LER +VEVLV+QQKKLL +L++ G
Sbjct:  121 KRDDISVLDKKIAACAERRQDKEDALKDLERQIVEVLVDQQKKLLAILTDAG 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1061.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMX2_ECTSI6.590e-1269.81Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2G7M7_9STRA8.730e-651.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1061contigH-paniculata_contig1061:27903..28061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1e-09
Seed eggNOG ortholog2880.D8LMX2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28KYD@1,2QTF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928766.1962047-CDS-H-paniculata_contig1061:27902..280611622928766.1962047-CDS-H-paniculata_contig1061:27902..28061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1061 27903..28061 +
1691480611.163327-CDS-H-paniculata_contig1061:27902..280611691480611.163327-CDS-H-paniculata_contig1061:27902..28061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1061 27903..28061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1061.398.1prot_H-paniculata_contig1061.398.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1061 27903..28061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1061.398.1

>prot_H-paniculata_contig1061.398.1 ID=prot_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
AKRRTLAGVDNKLTAMAEARLVKDDEMKGLERTLVEVLVEQQKKLLELLS
EVG
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mRNA from alignment at H-paniculata_contig1061:27903..28061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAACAGCCATGGC
TGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGGAGAGGACAC
TGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAACTGCTCAGT
GAGGTGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1061:27903..28061+

>mRNA_H-paniculata_contig1061.398.1 ID=mRNA_H-paniculata_contig1061.398.1|Name=mRNA_H-paniculata_contig1061.398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig1061:27903..28061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAACAGCCATGGC
TGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGGAGAGGACAC
TGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAACTGCTCAGT
GAGGTGGGTGCCAAGCGCAGAACATTGGCGGGTGTAGACAACAAGCTAAC
AGCCATGGCTGAAGCTCGCTTGGTGAAAGACGACGAAATGAAGGGGCTGG
AGAGGACACTGGTGGAAGTATTGGTGGAGCAGCAGAAGAAGCTTCTAGAA
CTGCTCAGTGAGGTGGGT
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