Homology
BLAST of mRNA_H-paniculata_contig10594.388.1 vs. uniprot
Match:
D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)
HSP 1 Score: 64.3 bits (155), Expect = 8.110e-8
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 2
Query: 671 SLPPSLRCDTFPRLVCCQ---LLAMRIPRTSGKVAKCKGFALVRYVEPGAALSAVKKISTIKMGSHQLRACSSTNANKLFIGKLNKTW 925
+LPPS +T ++ Q +++MR+ T + KC G ALVR+ A A++++ IKM S++L A SS+NAN LFIG LNKTW
Sbjct: 256 NLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTW 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10594.388.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 8.11e-8 / Id = 43.18 Sequence D7FTF9_ECTSI
Match Name E-value Identity Description
D7FTF9_ECTSI 8.110e-8 43.18 Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 65.9 Seed ortholog evalue 1.9e-08 Seed eggNOG ortholog 2880.D7FTF9 KEGG ko ko:K14795 Hectar predicted targeting category signal anchor GOs GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0006417,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008143,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0017148,GO:0019219,GO:0019222,GO:0030425,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034250,GO:0034341,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043489,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045087,GO:0045727,GO:0045934,GO:0048027,GO:0048255,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070717,GO:0070887,GO:0070934,GO:0070937,GO:0071013,GO:0071204,GO:0071310,GO:0071345,GO:0071346,GO:0080090,GO:0090365,GO:0090367,GO:0097159,GO:0097447,GO:0097452,GO:0097458,GO:0120025,GO:0120038,GO:1901363,GO:1902369,GO:1902373,GO:1902494,GO:1903311,GO:1903312,GO:1990635,GO:1990904,GO:2000112,GO:2000113 EggNOG free text desc. cytidine to uridine editing EggNOG OGs KOG0117@1,KOG0117@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko03009 Exons 2 Model size 925 Cds size 462 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10594.388.1
>prot_H-paniculata_contig10594.388.1 ID=prot_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MKNRFSIVFKLWREGRSLVATVSGTAPPTVERDVRALCVVFVLACFLFRC back to top mRNA from alignment at H-paniculata_contig10594:3740..7135+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10594.388.1 ID=mRNA_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3396bp|location=Sequence derived from alignment at H-paniculata_contig10594:3740..7135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GCAAGGTATTGATTTTTCCAGTGCGGCCTGTTGTTTGTCGTTATGTATTG
CCTGTTTTTGTGCTTCGTTGTGGATGTCTTTGGTGTGATGTTTATTCAGG
CTGTTCGTCCGTACTTACTTGCATGGGTTGTTTTTTTGTTCCTCAAAGTG
GGCTTCGGCGGCGTAGAACTTGCCGAGTTTTGGATTGAACGGATTGTTGG
TGGGAGTAGGGGATATGTTGCGTATCTCCTTGTTTCGGCTTGTAAGCTTC
GAGGTTGCCTTTTTCGCTAGTTTTGCCCAGTTGGACCTTCTTCTGTTTTA
CTCAAAGTTAGCAGTCATATTTGGAGCATGACAGTACAATTTCCTCCTGA
CAGTGACTTCCCAGACATACTGACCGCGTAAACTCTGGTTTGTTGTTGTT
TGCTGTTCATTGTTCCCGATATGCACGTCTAGCCGTGTTGTTTTACGCGA
GTAGCTTGCTTTC ATGAAGAATCGTTTTTCGATCGTGTTCAAGCTCTGGA
GAGAGGGTCGGTCCCTCGTGGCCACAGTATCGGGTACTGCACCTCCTACG
GTAGAAAGAGACGTACGTGCGCTTTGTGTTGTTTTCGTTCTCGCTTGCTT
CTTGTTTCGGTGTGCTTGTGTGCTTGTGTTTTCCCCCCGCTCCTTCGTCT
CTGTCGTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCGTTGCGACACT
TTTCCTCGCTTGGTGTGTTGTCAGCTCCTGGCGATGCGCATACCGAGAAC
GTCGGGGAAAGTGGCAAAGTGTAAAGGCTTCGCGCTGGTGCGCTACGTAG
AACCCGGGGCTGCCTTGAGCGCTGTTAAGAAAATATCCACAATCAAG GTA
AGTTTTCTTCTTTTTTTCCCTCCAATTTGCAAAACAAAAAATTCAACATA
TTGGCGAATTTTCAGGAGAGGCAGGGCGATTGATTGTATCGTCTCATCCA
TGATGCACTATAGCAGTATTTTTCGTATACGGTCAAACGCCGTGCGTCAA
ACAATACAAAATAGTTCATTATTTGAGAGAATCACGATTGGTCAAAGGGG
AGTCGACATGAAGAGATGTGCTGTGTACCTGGATCATTCTGCACCAAAAT
CAAGGAGGCATAGTAAGTACACAGCGGCCTATCTGAAATGCTGTGCTCTA
TCGATGTTTTCAAGTTAGATGTATTCACATGCACTTCGCTCTGCGAACGC
TGTTAAGTAGTCACAACCGCGCTGTCTGTCAAGGCATAATACAATACAAT
AGGTAGGGTCTATGGGCTCCGACTTCGAGTTCGTTTTTTTTTTTGTTAAA
TTCAAACTGTCAAAAAACCTGAACTATTTGTGGGAGGGGAAAGGTCGACG
AAGATGTGTTAAGAAAACAGAGTGCTGCCTCCGTGCCTACAGTAAAGTCG
ATTGGTTTTATAGAGGCACGTACCCATCTCCATTTTTTTTTTCTACTTAC
AATCCTCAATTATTCGAATTTGATCCCCAAAAAGTCACGGAATTTGGCAA
GAAATAAATCGGCCGAAAAAAGGCAATATTTTGCCCCTTTTCGTAATTTC
CGAATCGAAAAACGTGAAATTTGGCTCTTGGACAGTTAAAAATGACTGGG
TATATCTCCATATTTTGGAGGTTTGTGTATCGCCACTGATGTCATCGAGT
ACATCATACTACTATATCAGTTAGGGCTACCGATATATTGACATTTGCCG
TTACCGGCTATATCGTTCGAGAAATCTGTTATTATACAATTGTATCTCTG
ACCGCGGGTTCGATAGAATGTCTCAAAGTGCAAAGAAAAACAAATGCGTG
TAATATGCCGGCCACAGCTATTTACGATAAGCTCACCAAGCTATTCAGAC
TTACCCCCGTCAGGTACAGCTAGCTCGGCTGCGTAAGTGATGGTCATTTT
TTTTCACTGACTTTATTTGGTTGCGCCCGTACAGTTCCTGCTTGTCCTGG
ACCCACGGACTCGCTGTACTCGCAGTGGGGCTCACGTGGTGAGGAAAACT
GCTCGCTGCATTCACAGTGGCTCGCTATGCTCGCATGAAGATTCGCTTTT
CAGGATATACTTGAGTATAAAATTTTAAATATGTTCCGAAATGATGACAA
ACGTACCGTATTAGATAATGACATAAGGATCTAGATGCTTCTTAACTGCC
CTTTATAGATTGGGAGAATGCTGGTGAGTGCATCGAGGCATGATTATGGG
ACACGTGACCTCAGCCTCAAATATTTTGCTGGTAATCAATTGGTGTTTTG
TATAGCTCGTAACCGCCACGACGCTTTTGCCGGTGACCGCTGAAGCTGCT
TTTCAGTCCAACACAGGTCCCCCCCCCCCCTCCTATTGATCTAATCTCGC
TAGATAACCTGAAGATGGGTATACATGAACTTCAGAGATATAGTTCAACT
GACTATGGCAGGATGGACTTACGAATATTGTTTTTGCGGAAGACGTCAAT
CTTTCATGTGAAGATCGTTTAATATTATTCACCCCCTGGACAAATACGAA
TGGAGCATTTGCAATTATCTCGAACTATCATTATTTGTCTTGGGTAGACA
CGTATTTATTTATATTCGTTTACAAAGTCCATGGATGGCCACTCTACAGA
TGGTCACCAGGTGGTCGTATACTCGGCAGATAGTCACACATGCAGGTCCT
GTTTATTTTTCGGGTGGTACTGTACAGACTGAATACTCTACCTGCCCGAG
CGTTTCGGTGCTCCATGGTATATCGAGTACACTGCATATTATTCGCGACA
CTTGGACATCTTCCCCAACTCAAACAGATACCGTACTCATTCCAGATTTC
TCGTGTTTATTTGTGCCTTGTAGTCGTATTTGTCCGGCGGGTGAATGTTT
CACCTACAATACACATGCGAATGATAGGTGTCCTTCCTTGTGAAGGCTGC
CGTAGCTCGTGTCAAACGTAGTCAAAGAGGTGCGCGAAGTCATGGTCAAG
ATGCACTGTGTACAGGATCTTGTCGGTCTATCAGGCAGTGTACTACGCAA
AGACCCGCCAAGTCCAATCGAATGTCGAATCACCTGGTGGGCATGCGTGG
TTTGTTGTGGATGAGCTGTAGCAGTGAGGTAGGAGAGTAAGCACTTGTTC
ATGTACAGATCTCTTAGCATGTTGTACTCTAAGGTCACGTAATAGAGTTA
GCTGGGCAGCAGGCTATGGATTAGCACTCCCAAACATGATTACACTATGC
ATCTACGGGGGCTGCACCTGACTGTTACTTAACCTCTACCCCCCCCCCCC
CCCGCCTCACCTCCGCCCCTAAACGTGGATTTTTTTTTCCCTCTCTGTTT
CGTCTGTGTTTGCTTTAGATGGGATCCCATCAGCTGAGAGCTTGTTCCAG
CACCAATGCCAACAAGTTGTTTATAGGAAAATTGAACAAAACCTGG back to top Coding sequence (CDS) from alignment at H-paniculata_contig10594:3740..7135+
>mRNA_H-paniculata_contig10594.388.1 ID=mRNA_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig10594:3740..7135+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top