mRNA_H-paniculata_contig10594.388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10594.388.1
Unique NamemRNA_H-paniculata_contig10594.388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10594.388.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 8.110e-8
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:  671 SLPPSLRCDTFPRLVCCQ---LLAMRIPRTSGKVAKCKGFALVRYVEPGAALSAVKKISTIKMGSHQLRACSSTNANKLFIGKLNKTW 925
            +LPPS   +T  ++   Q   +++MR+  T  +  KC G ALVR+     A  A++++  IKM S++L A SS+NAN LFIG LNKTW
Sbjct:  256 NLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTW 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10594.388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTF9_ECTSI8.110e-843.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10594contigH-paniculata_contig10594:3740..7135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog2880.D7FTF9
KEGG koko:K14795
Hectar predicted targeting categorysignal anchor
GOsGO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0006417,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008143,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0017148,GO:0019219,GO:0019222,GO:0030425,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034250,GO:0034341,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043489,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045087,GO:0045727,GO:0045934,GO:0048027,GO:0048255,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070717,GO:0070887,GO:0070934,GO:0070937,GO:0071013,GO:0071204,GO:0071310,GO:0071345,GO:0071346,GO:0080090,GO:0090365,GO:0090367,GO:0097159,GO:0097447,GO:0097452,GO:0097458,GO:0120025,GO:0120038,GO:1901363,GO:1902369,GO:1902373,GO:1902494,GO:1903311,GO:1903312,GO:1990635,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.cytidine to uridine editing
EggNOG OGsKOG0117@1,KOG0117@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size925
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10594.388.1prot_H-paniculata_contig10594.388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10594 4203..7135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928764.1089344-UTR-H-paniculata_contig10594:3739..42021622928764.1089344-UTR-H-paniculata_contig10594:3739..4202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10594 3740..4202 +
1691480610.227112-UTR-H-paniculata_contig10594:3739..42021691480610.227112-UTR-H-paniculata_contig10594:3739..4202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10594 3740..4202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928764.1209197-CDS-H-paniculata_contig10594:4202..45861622928764.1209197-CDS-H-paniculata_contig10594:4202..4586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10594 4203..4586 +
1691480610.2386162-CDS-H-paniculata_contig10594:4202..45861691480610.2386162-CDS-H-paniculata_contig10594:4202..4586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10594 4203..4586 +
1622928764.1333706-CDS-H-paniculata_contig10594:7057..71351622928764.1333706-CDS-H-paniculata_contig10594:7057..7135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10594 7058..7135 +
1691480610.2457063-CDS-H-paniculata_contig10594:7057..71351691480610.2457063-CDS-H-paniculata_contig10594:7057..7135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10594 7058..7135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10594.388.1

>prot_H-paniculata_contig10594.388.1 ID=prot_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MKNRFSIVFKLWREGRSLVATVSGTAPPTVERDVRALCVVFVLACFLFRC
ACVLVFSPRSFVSVVSLPPSLPPSLRCDTFPRLVCCQLLAMRIPRTSGKV
AKCKGFALVRYVEPGAALSAVKKISTIKMGSHQLRACSSTNANKLFIGKL
NKTW
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mRNA from alignment at H-paniculata_contig10594:3740..7135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10594.388.1 ID=mRNA_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3396bp|location=Sequence derived from alignment at H-paniculata_contig10594:3740..7135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGGTATTGATTTTTCCAGTGCGGCCTGTTGTTTGTCGTTATGTATTG
CCTGTTTTTGTGCTTCGTTGTGGATGTCTTTGGTGTGATGTTTATTCAGG
CTGTTCGTCCGTACTTACTTGCATGGGTTGTTTTTTTGTTCCTCAAAGTG
GGCTTCGGCGGCGTAGAACTTGCCGAGTTTTGGATTGAACGGATTGTTGG
TGGGAGTAGGGGATATGTTGCGTATCTCCTTGTTTCGGCTTGTAAGCTTC
GAGGTTGCCTTTTTCGCTAGTTTTGCCCAGTTGGACCTTCTTCTGTTTTA
CTCAAAGTTAGCAGTCATATTTGGAGCATGACAGTACAATTTCCTCCTGA
CAGTGACTTCCCAGACATACTGACCGCGTAAACTCTGGTTTGTTGTTGTT
TGCTGTTCATTGTTCCCGATATGCACGTCTAGCCGTGTTGTTTTACGCGA
GTAGCTTGCTTTCATGAAGAATCGTTTTTCGATCGTGTTCAAGCTCTGGA
GAGAGGGTCGGTCCCTCGTGGCCACAGTATCGGGTACTGCACCTCCTACG
GTAGAAAGAGACGTACGTGCGCTTTGTGTTGTTTTCGTTCTCGCTTGCTT
CTTGTTTCGGTGTGCTTGTGTGCTTGTGTTTTCCCCCCGCTCCTTCGTCT
CTGTCGTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCGTTGCGACACT
TTTCCTCGCTTGGTGTGTTGTCAGCTCCTGGCGATGCGCATACCGAGAAC
GTCGGGGAAAGTGGCAAAGTGTAAAGGCTTCGCGCTGGTGCGCTACGTAG
AACCCGGGGCTGCCTTGAGCGCTGTTAAGAAAATATCCACAATCAAGGTA
AGTTTTCTTCTTTTTTTCCCTCCAATTTGCAAAACAAAAAATTCAACATA
TTGGCGAATTTTCAGGAGAGGCAGGGCGATTGATTGTATCGTCTCATCCA
TGATGCACTATAGCAGTATTTTTCGTATACGGTCAAACGCCGTGCGTCAA
ACAATACAAAATAGTTCATTATTTGAGAGAATCACGATTGGTCAAAGGGG
AGTCGACATGAAGAGATGTGCTGTGTACCTGGATCATTCTGCACCAAAAT
CAAGGAGGCATAGTAAGTACACAGCGGCCTATCTGAAATGCTGTGCTCTA
TCGATGTTTTCAAGTTAGATGTATTCACATGCACTTCGCTCTGCGAACGC
TGTTAAGTAGTCACAACCGCGCTGTCTGTCAAGGCATAATACAATACAAT
AGGTAGGGTCTATGGGCTCCGACTTCGAGTTCGTTTTTTTTTTTGTTAAA
TTCAAACTGTCAAAAAACCTGAACTATTTGTGGGAGGGGAAAGGTCGACG
AAGATGTGTTAAGAAAACAGAGTGCTGCCTCCGTGCCTACAGTAAAGTCG
ATTGGTTTTATAGAGGCACGTACCCATCTCCATTTTTTTTTTCTACTTAC
AATCCTCAATTATTCGAATTTGATCCCCAAAAAGTCACGGAATTTGGCAA
GAAATAAATCGGCCGAAAAAAGGCAATATTTTGCCCCTTTTCGTAATTTC
CGAATCGAAAAACGTGAAATTTGGCTCTTGGACAGTTAAAAATGACTGGG
TATATCTCCATATTTTGGAGGTTTGTGTATCGCCACTGATGTCATCGAGT
ACATCATACTACTATATCAGTTAGGGCTACCGATATATTGACATTTGCCG
TTACCGGCTATATCGTTCGAGAAATCTGTTATTATACAATTGTATCTCTG
ACCGCGGGTTCGATAGAATGTCTCAAAGTGCAAAGAAAAACAAATGCGTG
TAATATGCCGGCCACAGCTATTTACGATAAGCTCACCAAGCTATTCAGAC
TTACCCCCGTCAGGTACAGCTAGCTCGGCTGCGTAAGTGATGGTCATTTT
TTTTCACTGACTTTATTTGGTTGCGCCCGTACAGTTCCTGCTTGTCCTGG
ACCCACGGACTCGCTGTACTCGCAGTGGGGCTCACGTGGTGAGGAAAACT
GCTCGCTGCATTCACAGTGGCTCGCTATGCTCGCATGAAGATTCGCTTTT
CAGGATATACTTGAGTATAAAATTTTAAATATGTTCCGAAATGATGACAA
ACGTACCGTATTAGATAATGACATAAGGATCTAGATGCTTCTTAACTGCC
CTTTATAGATTGGGAGAATGCTGGTGAGTGCATCGAGGCATGATTATGGG
ACACGTGACCTCAGCCTCAAATATTTTGCTGGTAATCAATTGGTGTTTTG
TATAGCTCGTAACCGCCACGACGCTTTTGCCGGTGACCGCTGAAGCTGCT
TTTCAGTCCAACACAGGTCCCCCCCCCCCCTCCTATTGATCTAATCTCGC
TAGATAACCTGAAGATGGGTATACATGAACTTCAGAGATATAGTTCAACT
GACTATGGCAGGATGGACTTACGAATATTGTTTTTGCGGAAGACGTCAAT
CTTTCATGTGAAGATCGTTTAATATTATTCACCCCCTGGACAAATACGAA
TGGAGCATTTGCAATTATCTCGAACTATCATTATTTGTCTTGGGTAGACA
CGTATTTATTTATATTCGTTTACAAAGTCCATGGATGGCCACTCTACAGA
TGGTCACCAGGTGGTCGTATACTCGGCAGATAGTCACACATGCAGGTCCT
GTTTATTTTTCGGGTGGTACTGTACAGACTGAATACTCTACCTGCCCGAG
CGTTTCGGTGCTCCATGGTATATCGAGTACACTGCATATTATTCGCGACA
CTTGGACATCTTCCCCAACTCAAACAGATACCGTACTCATTCCAGATTTC
TCGTGTTTATTTGTGCCTTGTAGTCGTATTTGTCCGGCGGGTGAATGTTT
CACCTACAATACACATGCGAATGATAGGTGTCCTTCCTTGTGAAGGCTGC
CGTAGCTCGTGTCAAACGTAGTCAAAGAGGTGCGCGAAGTCATGGTCAAG
ATGCACTGTGTACAGGATCTTGTCGGTCTATCAGGCAGTGTACTACGCAA
AGACCCGCCAAGTCCAATCGAATGTCGAATCACCTGGTGGGCATGCGTGG
TTTGTTGTGGATGAGCTGTAGCAGTGAGGTAGGAGAGTAAGCACTTGTTC
ATGTACAGATCTCTTAGCATGTTGTACTCTAAGGTCACGTAATAGAGTTA
GCTGGGCAGCAGGCTATGGATTAGCACTCCCAAACATGATTACACTATGC
ATCTACGGGGGCTGCACCTGACTGTTACTTAACCTCTACCCCCCCCCCCC
CCCGCCTCACCTCCGCCCCTAAACGTGGATTTTTTTTTCCCTCTCTGTTT
CGTCTGTGTTTGCTTTAGATGGGATCCCATCAGCTGAGAGCTTGTTCCAG
CACCAATGCCAACAAGTTGTTTATAGGAAAATTGAACAAAACCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10594:3740..7135+

>mRNA_H-paniculata_contig10594.388.1 ID=mRNA_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig10594:3740..7135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAATCGTTTTTCGATCGTGTTCAAGCTCTGGAGAGAGGGTCGGTC
CCTCGTGGCCACAGTATCGGGTACTGCACCTCCTACGGTAGAAAGAGACG
TACGTGCGCTTTGTGTTGTTTTCGTTCTCGCTTGCTTCTTGTTTCGGTGT
GCTTGTGTGCTTGTGTTTTCCCCCCGCTCCTTCGTCTCTGTCGTTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCGTTGCGACACTTTTCCTCGCTTGG
TGTGTTGTCAGCTCCTGGCGATGCGCATACCGAGAACGTCGGGGAAAGTG
GCAAAGTGTAAAGGCTTCGCGCTGGTGCGCTACGTAGAACCCGGGGCTGC
CTTGAGCGCTGTTAAGAAAATATCCACAATCAAGATGAAGAATCGTTTTT
CGATCGTGTTCAAGCTCTGGAGAGAGGGTCGGTCCCTCGTGGCCACAGTA
TCGGGTACTGCACCTCCTACGGTAGAAAGAGACGTACGTGCGCTTTGTGT
TGTTTTCGTTCTCGCTTGCTTCTTGTTTCGGTGTGCTTGTGTGCTTGTGT
TTTCCCCCCGCTCCTTCGTCTCTGTCGTTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCGTTGCGACACTTTTCCTCGCTTGGTGTGTTGTCAGCTCCT
GGCGATGCGCATACCGAGAACGTCGGGGAAAGTGGCAAAGTGTAAAGGCT
TCGCGCTGGTGCGCTACGTAGAACCCGGGGCTGCCTTGAGCGCTGTTAAG
AAAATATCCACAATCAAGATGGGATCCCATCAGCTGAGAGCTTGTTCCAG
CACCAATGCCAACAAGTTGTTTATAGGAAAATTGAACAAAACCTGGATGG
GATCCCATCAGCTGAGAGCTTGTTCCAGCACCAATGCCAACAAGTTGTTT
ATAGGAAAATTGAACAAAACCTGG
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