mRNA_H-paniculata_contig1618.3562.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A151T8W3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T8W3_CAJCA) HSP 1 Score: 70.1 bits (170), Expect = 2.250e-12 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 31 VEPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
VEPKN ++A A+ + W A K E L+DNG WT V PSN++ + ++ IK +G V KYK L+A G+HQ G + + SP
Sbjct: 23 VEPKNTKQALAN---DTWLAAMKQEYNALLDNGTWTLVSLPSNRIAIGCKWVFCIKENPDGTVHKYKARLVAKGFHQQYGYDYNKTFSP 108
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A6L2P9M1_TANCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P9M1_TANCI) HSP 1 Score: 69.7 bits (169), Expect = 8.780e-12 Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 34 EPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
EP +++ A +P+ W A EMQ +IDN VW V+ P N V + +K K +G V YK L+A GY Q+ GVH++E SP
Sbjct: 242 EPTSYKAAMLNPKYNKWLDAMNAEMQSMIDNKVWVLVDLPPNCTTVRSKWFFKKKTNMDGIVHTYKACLVAKGYTQLYGVHYEETFSP 329
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A2N5SCW9_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5SCW9_9BASI) HSP 1 Score: 69.3 bits (168), Expect = 1.250e-11 Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query: 19 SDLPVEPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
S P PK +R A +SPE W A K+E+ ++ GVWT V PSN ++ T+ +++ K GN+ K+K L A G Q +G+ F E +P
Sbjct: 850 STSPSVPKTYRSAMSSPEAAEWSSAIKLELDAMVQLGVWTVVPIPSNHHLLGTIWVFRKKYDANGNLMKFKARLCAQGSAQQEGIDFNETYAP 942
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR) HSP 1 Score: 68.6 bits (166), Expect = 2.220e-11 Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 34 EPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
EP +EA S + W+ A +E + L++N W VE P ++ + ++K+K +G VE+YKC L+A GY Q GV + E SP
Sbjct: 136 EPTTMKEAMLSSNAKEWKEAADLEYESLLENETWDLVELPKDRKPIGQRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSP 223
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 67.0 bits (162), Expect = 7.630e-11 Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 49 REAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
+EA S + W+ A +E + L++N W VE P ++ + + ++K+K +G VE+YKC L+A GY Q GV + E SP
Sbjct: 2 KEAMLSSNAKEWKEAADLEYESLLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSP 84
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A438BYU3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BYU3_VITVI) HSP 1 Score: 65.1 bits (157), Expect = 1.280e-10 Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
WQ A E+Q L +N W+ P++K + LYKIK +G +E YK L+A GY QI+GVH+ E P
Sbjct: 105 WQEAMHFEIQALEENNTWSLTPLPASKKPIGCKWLYKIKYKSDGRIECYKAHLVAKGYAQIEGVHYNEIFPP 176
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A087GCA0_ARAAL (Uncharacterized protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GCA0_ARAAL) HSP 1 Score: 65.5 bits (158), Expect = 2.820e-10 Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 76 EHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
E W++A + E+ + +N W VE P V+ ++K K+ E G+++K+K L+A GYHQ +GV F E +P
Sbjct: 226 EVWRKAMEAEISSIEENNTWELVELPEGAKVIGVKWIFKTKLNENGDIDKFKARLVAKGYHQKQGVDFHEVFAP 299
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A5BSZ5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BSZ5_VITVI) HSP 1 Score: 65.1 bits (157), Expect = 3.420e-10 Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
WQ A E+Q L +N W+ P++K + LYKIK +G +E YK L+A GY QI+GVH+ E P
Sbjct: 275 WQEAMHFEIQALEENNTWSLTPLPASKKPIGCKWLYKIKYKSDGRIECYKAHLVAKGYAQIEGVHYNEIFPP 346
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: UPI00158C6C02 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Populus alba TaxID=43335 RepID=UPI00158C6C02) HSP 1 Score: 62.0 bits (149), Expect = 4.030e-10 Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
W+RA E+Q L N W + P K ++ +YK K+ E+G ++K+K L+ GY+Q GV +QE +P
Sbjct: 39 WKRAMDAEIQALEKNETWELTDLPEGKKIIGVKWIYKTKLNEKGEIDKFKARLVVKGYNQKYGVDYQEIFAP 110
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A5N6NBX2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX2_9ASTR) HSP 1 Score: 64.7 bits (156), Expect = 4.920e-10 Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
WQ A E+Q ++ N W V+ P N+ + +YK K+ E+G V+KYK L+ GY Q G+ +QE +P
Sbjct: 210 WQDAMDCEIQSILKNDTWELVDAPQNQKTIGVKWIYKTKLNEKGQVDKYKARLVVKGYKQKYGIDYQEVFAP 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1618.3562.1 >prot_H-paniculata_contig1618.3562.1 ID=prot_H-paniculata_contig1618.3562.1|Name=mRNA_H-paniculata_contig1618.3562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp MPEELRSDLPVEPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERback to top mRNA from alignment at H-paniculata_contig1618:24974..25270+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1618.3562.1 ID=mRNA_H-paniculata_contig1618.3562.1|Name=mRNA_H-paniculata_contig1618.3562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig1618:24974..25270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1618:24974..25270+ >mRNA_H-paniculata_contig1618.3562.1 ID=mRNA_H-paniculata_contig1618.3562.1|Name=mRNA_H-paniculata_contig1618.3562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig1618:24974..25270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |