mRNA_H-paniculata_contig1618.3562.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1618.3562.1
Unique NamemRNA_H-paniculata_contig1618.3562.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A151T8W3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T8W3_CAJCA)

HSP 1 Score: 70.1 bits (170), Expect = 2.250e-12
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   31 VEPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            VEPKN ++A A+   + W  A K E   L+DNG WT V  PSN++ +    ++ IK   +G V KYK  L+A G+HQ  G  + +  SP
Sbjct:   23 VEPKNTKQALAN---DTWLAAMKQEYNALLDNGTWTLVSLPSNRIAIGCKWVFCIKENPDGTVHKYKARLVAKGFHQQYGYDYNKTFSP 108          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A6L2P9M1_TANCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P9M1_TANCI)

HSP 1 Score: 69.7 bits (169), Expect = 8.780e-12
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   34 EPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            EP +++ A  +P+   W  A   EMQ +IDN VW  V+ P N   V +   +K K   +G V  YK  L+A GY Q+ GVH++E  SP
Sbjct:  242 EPTSYKAAMLNPKYNKWLDAMNAEMQSMIDNKVWVLVDLPPNCTTVRSKWFFKKKTNMDGIVHTYKACLVAKGYTQLYGVHYEETFSP 329          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A2N5SCW9_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5SCW9_9BASI)

HSP 1 Score: 69.3 bits (168), Expect = 1.250e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   19 SDLPVEPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            S  P  PK +R A +SPE   W  A K+E+  ++  GVWT V  PSN  ++ T+ +++ K    GN+ K+K  L A G  Q +G+ F E  +P
Sbjct:  850 STSPSVPKTYRSAMSSPEAAEWSSAIKLELDAMVQLGVWTVVPIPSNHHLLGTIWVFRKKYDANGNLMKFKARLCAQGSAQQEGIDFNETYAP 942          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR)

HSP 1 Score: 68.6 bits (166), Expect = 2.220e-11
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   34 EPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            EP   +EA  S   + W+ A  +E + L++N  W  VE P ++  +    ++K+K   +G VE+YKC L+A GY Q  GV + E  SP
Sbjct:  136 EPTTMKEAMLSSNAKEWKEAADLEYESLLENETWDLVELPKDRKPIGQRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSP 223          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 67.0 bits (162), Expect = 7.630e-11
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   49 REAQASPEGEHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            +EA  S   + W+ A  +E + L++N  W  VE P ++  + +  ++K+K   +G VE+YKC L+A GY Q  GV + E  SP
Sbjct:    2 KEAMLSSNAKEWKEAADLEYESLLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSP 84          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A438BYU3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BYU3_VITVI)

HSP 1 Score: 65.1 bits (157), Expect = 1.280e-10
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            WQ A   E+Q L +N  W+    P++K  +    LYKIK   +G +E YK  L+A GY QI+GVH+ E   P
Sbjct:  105 WQEAMHFEIQALEENNTWSLTPLPASKKPIGCKWLYKIKYKSDGRIECYKAHLVAKGYAQIEGVHYNEIFPP 176          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A087GCA0_ARAAL (Uncharacterized protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GCA0_ARAAL)

HSP 1 Score: 65.5 bits (158), Expect = 2.820e-10
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   76 EHWQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            E W++A + E+  + +N  W  VE P    V+    ++K K+ E G+++K+K  L+A GYHQ +GV F E  +P
Sbjct:  226 EVWRKAMEAEISSIEENNTWELVELPEGAKVIGVKWIFKTKLNENGDIDKFKARLVAKGYHQKQGVDFHEVFAP 299          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A5BSZ5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BSZ5_VITVI)

HSP 1 Score: 65.1 bits (157), Expect = 3.420e-10
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            WQ A   E+Q L +N  W+    P++K  +    LYKIK   +G +E YK  L+A GY QI+GVH+ E   P
Sbjct:  275 WQEAMHFEIQALEENNTWSLTPLPASKKPIGCKWLYKIKYKSDGRIECYKAHLVAKGYAQIEGVHYNEIFPP 346          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: UPI00158C6C02 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Populus alba TaxID=43335 RepID=UPI00158C6C02)

HSP 1 Score: 62.0 bits (149), Expect = 4.030e-10
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            W+RA   E+Q L  N  W   + P  K ++    +YK K+ E+G ++K+K  L+  GY+Q  GV +QE  +P
Sbjct:   39 WKRAMDAEIQALEKNETWELTDLPEGKKIIGVKWIYKTKLNEKGEIDKFKARLVVKGYNQKYGVDYQEIFAP 110          
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Match: A0A5N6NBX2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX2_9ASTR)

HSP 1 Score: 64.7 bits (156), Expect = 4.920e-10
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   82 WQRAEKVEMQGLIDNGVWTQVERPSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP 297
            WQ A   E+Q ++ N  W  V+ P N+  +    +YK K+ E+G V+KYK  L+  GY Q  G+ +QE  +P
Sbjct:  210 WQDAMDCEIQSILKNDTWELVDAPQNQKTIGVKWIYKTKLNEKGQVDKYKARLVVKGYKQKYGIDYQEVFAP 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1618.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T8W3_CAJCA2.250e-1240.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2P9M1_TANCI8.780e-1239.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N5SCW9_9BASI1.250e-1137.63Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0J2S8_LARCR2.220e-1136.36Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A6G0HFF8_LARCR7.630e-1136.14Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A438BYU3_VITVI1.280e-1041.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A087GCA0_ARAAL2.820e-1036.49Uncharacterized protein n=1 Tax=Arabis alpina TaxI... [more]
A5BSZ5_VITVI3.420e-1041.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00158C6C024.030e-1036.11uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A5N6NBX2_9ASTR4.920e-1037.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1618contigH-paniculata_contig1618:24974..25270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.0880003-CDS-H-paniculata_contig1618:24973..252701622929292.0880003-CDS-H-paniculata_contig1618:24973..25270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 24974..25270 +
1691480803.683522-CDS-H-paniculata_contig1618:24973..252701691480803.683522-CDS-H-paniculata_contig1618:24973..25270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 24974..25270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1618.3562.1prot_H-paniculata_contig1618.3562.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1618 24974..25270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1618.3562.1

>prot_H-paniculata_contig1618.3562.1 ID=prot_H-paniculata_contig1618.3562.1|Name=mRNA_H-paniculata_contig1618.3562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MPEELRSDLPVEPKNHREAQASPEGEHWQRAEKVEMQGLIDNGVWTQVER
PSNKLVVSTMMLYKIKIGEEGNVEKYKCSLIAHGYHQIKGVHFQEASSP
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mRNA from alignment at H-paniculata_contig1618:24974..25270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1618.3562.1 ID=mRNA_H-paniculata_contig1618.3562.1|Name=mRNA_H-paniculata_contig1618.3562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig1618:24974..25270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGAGCGACCTCCCCGTGGAGCCCAAGAACCACCG GGAGGCACAGGCGTCGCCGGAGGGAGAACACTGGCAAAGAGCGGAGAAAG TCGAGATGCAAGGCCTCATCGACAACGGGGTTTGGACACAGGTGGAGCGC CCGAGTAACAAGCTGGTCGTGAGCACGATGATGCTCTACAAAATAAAAAT CGGCGAGGAAGGTAACGTGGAGAAATACAAGTGCAGCCTGATCGCCCACG GATACCATCAGATCAAGGGCGTCCACTTCCAGGAAGCTTCGTCCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig1618:24974..25270+

>mRNA_H-paniculata_contig1618.3562.1 ID=mRNA_H-paniculata_contig1618.3562.1|Name=mRNA_H-paniculata_contig1618.3562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig1618:24974..25270+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGGAGCGACCTCCCCGTGGAGCCCAAGAACCACCG
GGAGGCACAGGCGTCGCCGGAGGGAGAACACTGGCAAAGAGCGGAGAAAG
TCGAGATGCAAGGCCTCATCGACAACGGGGTTTGGACACAGGTGGAGCGC
CCGAGTAACAAGCTGGTCGTGAGCACGATGATGCTCTACAAAATAAAAAT
CGGCGAGGAAGGTAACGTGGAGAAATACAAGTGCAGCCTGATCGCCCACG
GATACCATCAGATCAAGGGCGTCCACTTCCAGGAAGCTTCGTCCCCTATG
CCCGAAGAACTGAGGAGCGACCTCCCCGTGGAGCCCAAGAACCACCGGGA
GGCACAGGCGTCGCCGGAGGGAGAACACTGGCAAAGAGCGGAGAAAGTCG
AGATGCAAGGCCTCATCGACAACGGGGTTTGGACACAGGTGGAGCGCCCG
AGTAACAAGCTGGTCGTGAGCACGATGATGCTCTACAAAATAAAAATCGG
CGAGGAAGGTAACGTGGAGAAATACAAGTGCAGCCTGATCGCCCACGGAT
ACCATCAGATCAAGGGCGTCCACTTCCAGGAAGCTTCGTCCCCT
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