mRNA_H-paniculata_contig1547.3200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1547.3200.1
Unique NamemRNA_H-paniculata_contig1547.3200.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 8.050e-97
Identity = 172/290 (59.31%), Postives = 205/290 (70.69%), Query Frame = 3
Query:  105 MTCTIRSLVTVASILVANGVCAFVNVNGITSSVVSNGRHLCVPAKSTAPVSHRSSRRWGKSEKEMMKDGSRGVGGVDKKHREGPFSSLRESFKKVVRKSPFSTSRMAKDTVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVASP 974
            M+C +RSL  VA++L AN  CAFV+  G+TS     GR +  PA ++     RSSRRW K++     D   G GG   +   GPFSS  +       + PFS +   KD VDD+LNS+AFLNKKVEML+KQI ATQ +    +A+  + W EWGPQV+RL+KEF+ +K RGGE   +  NKGKAEAIN+ILGVADNFERAA AI+ ETDGERAVV YYK  YD MM CLE L L EV+ IGAPFDYN+HNAIMRE + EF EDVVCKVFQKGY+VGDTLVRPAMVAVA P
Sbjct:    1 MSCAMRSLFAVAAMLAANEACAFVHPAGLTSLA---GRSVAAPACTSV---ERSSRRWDKAQ---QLDAGNGDGGSSGEQPAGPFSSWVKKTAGRFGRGPFSRAAK-KDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVP 280          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.640e-56
Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 3
Query:  435 VDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
            VDD+L S AFL KKVE+LKKQ+A T++      AE  K WEEWGPQ++RL+ EFT +K R   + +   N+ K +A+  IL V DNFERA+ AI  +TDGE+AVV YYKGVY+ M    + LG+E V  +G PFDYN+H A+MR+PS E  ED+V + F KG+ VG TL+RPAMVAV+S
Sbjct:   63 VDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 241          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI)

HSP 1 Score: 172 bits (435), Expect = 4.900e-47
Identity = 82/178 (46.07%), Postives = 119/178 (66.85%), Query Frame = 3
Query:  438 DDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
            DD+L +  FL KK+E+L KQIA  ++       E  K WEEWGPQ+ERL++EF  ++ R   + +      K + + +IL V+DNF RA+ AI+P T+GE AVV+YYK +Y+ M     +LG++ +  +G PFDYN+H A+MR+ S+EF ED+VC    KG+ VG  L+RPAMVAV++
Sbjct:   68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQ-SSEFDEDIVCLELTKGFMVGKELIRPAMVAVST 244          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.440e-41
Identity = 70/180 (38.89%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  432 TVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
            +VDD+LN+ AFL KK+E L K +   Q+  +E +AE AK WEEWGPQ+ R ++E+  ++ R     +      K + + ++L   DNF+RA AA  P+++ E+A ++ Y  ++D +      LG++E+  +G PFD+N+H+A+M++PS E+ ED +C  + KGY V   ++RPAMV V++
Sbjct:  117 SVDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSA 296          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.180e-37
Identity = 73/177 (41.24%), Postives = 113/177 (63.84%), Query Frame = 3
Query:  438 DDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVA 968
            DD+L+S AFL +KVE+L+  IA T+++            EEWGPQ+E L++E+T I+ R  E+   G +  K   +  IL + DNF+RA+  I  ET+ ++A+   YK  Y  ++   + +G+ EVE +G  FDY +H A+M+ P +E+ E  VC+ FQKG+ +G++L+RPAMVAVA
Sbjct:   71 DDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S2VF25_9STRA (GrpE protein homolog n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF25_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.990e-37
Identity = 72/177 (40.68%), Postives = 111/177 (62.71%), Query Frame = 3
Query:  441 DVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
            D+LNS AFL +K+E+L+  IA  + +TEE  A       EWG Q++ LQKE+  I+ R   +  +G      +   ++L V DN++RA  A+ P  D E  +   YK  +D +M     LG+EE++ +G  FDY +H A+M++PS E+ E +VC+ FQKG+++GDTL+R +MVAVA+
Sbjct:   91 DILNSPAFLQRKLEVLQSDIAKVEADTEEARARLEAGKAEWGGQLDELQKEYQNIQERLNSQNKQGDTMAIVQVTREMLKVLDNYDRAFGAVTPSGDIEAEIEADYKSTWDDIMQTFSDLGVEEIKTVGVEFDYEVHQAVMQKPSDEYEEGIVCEEFQKGFKIGDTLIRASMVAVAA 267          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA)

HSP 1 Score: 145 bits (365), Expect = 8.220e-37
Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  435 VDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVA 968
            V+D+L+S AFL +K+E+L+  IA T++             EEWGPQ+E LQ+E+T I+ R  E+   G +  K   +  IL + DNF+RA+  I  ET+ E+ +   YK  Y  ++     +G+ EVE +G  FDY +H A+M+ P TE+ E VVCK FQKG+ + ++L+RPAMVAVA
Sbjct:   70 VNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.640e-36
Identity = 72/177 (40.68%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  438 DDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVA 968
            +D+LNS AFL +K+E+L+  IA   ++            EEWGPQ+E LQ+E+  I+ R  E+   G +  K   +  +L + DNF+RA+  I  ETD E+ +   YK  Y  ++   + +G+ EVE +G+ FDY +H A+M+ P TE+ E  VC+ FQKG+ +G+ L+RPAMVAVA
Sbjct:  107 NDILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.690e-35
Identity = 71/187 (37.97%), Postives = 116/187 (62.03%), Query Frame = 3
Query:  411 TSRMAKDTVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
            T +   D+  D+LNS AFL +K+++LK  IA  ++     +    +   EW  Q++ LQKE+  I+ R G++  +G +    +   + L V DNF+RA   I  ETD ++ + E Y+  Y+ ++  L  LG+EEV+ +G  FDY +H A+M++PS E+ E +V + FQKG+++GDTL+R AMV+VA+
Sbjct:   56 TPQSNNDSSTDILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242          
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7R9WM61_9STRA (GrpE protein homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM61_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.190e-33
Identity = 67/177 (37.85%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  441 DVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
            D+LNS AFL +K+E+L+  I              +   EEW  Q+++L+ E+  IK+R   +  +      +E  + IL + DNFER    + PETD E+A+ E Y+ V+  ++  LE LG+++VE +G  FDY +H A+M+  S E+ E+++C+ +QKG+ +G+ L+RPAMVAVA+
Sbjct:   70 DILNSPAFLQRKLEVLETDIKKADXXXXXXXXXXSAGKEEWQDQLDKLEVEYKTIKDRMSAQTDQNDVVATSEVASAILELVDNFERGFGIVIPETDEEKAIDEEYRKVHSDILATLEKLGVKQVETVGKEFDYEVHQAVMQRASEEYEENIICEEYQKGFVIGEKLIRPAMVAVAA 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD7_ECTSI8.050e-9759.31GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZCF7_9STRA1.640e-5654.75GrpE protein homolog n=1 Tax=Tribonema minus TaxID... [more]
H6WB81_VAULI4.900e-4746.07GrpE protein homolog n=1 Tax=Vaucheria litorea Tax... [more]
A0A7S2V1T8_9STRA1.440e-4138.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448ZSA7_9STRA2.180e-3741.24GrpE protein homolog n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S2VF25_9STRA6.990e-3740.68GrpE protein homolog n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4AM71_9STRA8.220e-3742.13GrpE protein homolog n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0UHW3_9STRA5.640e-3640.68GrpE protein homolog n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3L4W1_9STRA2.690e-3537.97GrpE protein homolog n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9WM61_9STRA8.190e-3337.85GrpE protein homolog n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1547contigH-paniculata_contig1547:3817..6853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue6.4e-29
Seed eggNOG ortholog159749.K0RMY4
Preferred namemge1
KEGG koko:K03687
Hectar predicted targeting categorychloroplast
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
EggNOG free text desc.GrpE
EggNOG OGs2XD1Y@2836,COG0576@1,KOG3003@2759
Ec32 ortholog descriptionMitochondrial matrix cochaperone
Ec32 orthologEc-27_004320.1
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons5
Model size1392
Cds size873
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.67452-UTR-H-paniculata_contig1547:3816..42311622929237.67452-UTR-H-paniculata_contig1547:3816..4231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 3817..4231 -
1691480782.523651-UTR-H-paniculata_contig1547:3816..42311691480782.523651-UTR-H-paniculata_contig1547:3816..4231Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 3817..4231 -
1622929237.792199-UTR-H-paniculata_contig1547:6749..68531622929237.792199-UTR-H-paniculata_contig1547:6749..6853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 6750..6853 -
1691480782.5824485-UTR-H-paniculata_contig1547:6749..68531691480782.5824485-UTR-H-paniculata_contig1547:6749..6853Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1547 6750..6853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.694372-CDS-H-paniculata_contig1547:4231..43031622929237.694372-CDS-H-paniculata_contig1547:4231..4303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 4232..4303 -
1691480782.5331182-CDS-H-paniculata_contig1547:4231..43031691480782.5331182-CDS-H-paniculata_contig1547:4231..4303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 4232..4303 -
1622929237.7250202-CDS-H-paniculata_contig1547:4537..46211622929237.7250202-CDS-H-paniculata_contig1547:4537..4621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 4538..4621 -
1691480782.540956-CDS-H-paniculata_contig1547:4537..46211691480782.540956-CDS-H-paniculata_contig1547:4537..4621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 4538..4621 -
1622929237.7362916-CDS-H-paniculata_contig1547:4890..51391622929237.7362916-CDS-H-paniculata_contig1547:4890..5139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 4891..5139 -
1691480782.5488403-CDS-H-paniculata_contig1547:4890..51391691480782.5488403-CDS-H-paniculata_contig1547:4890..5139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 4891..5139 -
1622929237.7606387-CDS-H-paniculata_contig1547:5633..58641622929237.7606387-CDS-H-paniculata_contig1547:5633..5864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 5634..5864 -
1691480782.5585756-CDS-H-paniculata_contig1547:5633..58641691480782.5585756-CDS-H-paniculata_contig1547:5633..5864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 5634..5864 -
1622929237.777099-CDS-H-paniculata_contig1547:6512..67491622929237.777099-CDS-H-paniculata_contig1547:6512..6749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 6513..6749 -
1691480782.5726023-CDS-H-paniculata_contig1547:6512..67491691480782.5726023-CDS-H-paniculata_contig1547:6512..6749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1547 6513..6749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1547.3200.1prot_H-paniculata_contig1547.3200.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1547 4232..6749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1547.3200.1

>prot_H-paniculata_contig1547.3200.1 ID=prot_H-paniculata_contig1547.3200.1|Name=mRNA_H-paniculata_contig1547.3200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MTCTIRSLVTVASILVANGVCAFVNVNGITSSVVSNGRHLCVPAKSTAPV
SHRSSRRWGKSEKEMMKDGSRGVGGVDKKHREGPFSSLRESFKKVVRKSP
FSTSRMAKDTVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNW
EEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERA
AAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHN
AIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVASP*
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mRNA from alignment at H-paniculata_contig1547:3817..6853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1547.3200.1 ID=mRNA_H-paniculata_contig1547.3200.1|Name=mRNA_H-paniculata_contig1547.3200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3037bp|location=Sequence derived from alignment at H-paniculata_contig1547:3817..6853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGTGGTAACTCCAGCACCGCAAGGAGGATGAGGAGAGCAGAGACAAG GGGTAGAGTTAGGGCTCACTTCAGCTAGTAAATCTTTCGCGCATTGACAC AAGGATGACGTGCACGATACGTTCTCTTGTAACAGTGGCTTCCATCCTGG TGGCTAACGGTGTGTGTGCGTTTGTGAATGTCAACGGGATCACAAGCAGT GTTGTGAGCAACGGACGACACTTGTGCGTCCCTGCTAAGTCCACCGCTCC TGTATCGCACCGAAGCTCGAGGCGATGGGGGAAGTCAGAGAAGGAGATGA TGAAAGATGGAAGCAGAGGAGTCGGTGGTGTTGACAAGAAGGTGGGTGGT AGCCTTGGTCAAGTGGCCAACACACGTGTTCTTAGAAGCTGCGATAGCTT TGAGGACGTCCCACTTGCATGATGTGACTGCGAAACCTGTGTATGTATTG CTGCTGTACCACAACAGGCGGTCAATTATGTGTTGCTGCTCTTCCGGCAG TGGCAAGAACTGACCCTCAAATTCTTATGAATATTTTTTGTCGAGTCTTT CAGTCTTGTAATCACTGCAACGTAAATGCTTAGTCGAACGTATGTCGACA CTTCTAGGGTAATTTATTAGGTTCTCAACATGTAGTTATCGTGATAAAAA AACGGAGAGTACAGTCGTAAATGATTTTTATCATGCACTGCCGCACACAA CACACCCACTACTTGTAAAAAATACATACAGTAATAATGTATACCATGTT TACATCGCACGTAGAGACGATTATACACAGTAACGACCACGCCAGTACAG CAGTAGCCTCCTGTGTGGATTCTTCGTACAGGTATGGCTCACATGTACAG GATACGAGATGTCTTGGAGGCAGAGAATTGCCTGTGTCACACATCACTCT CACTCAACTCTGTTACTCCCCCAACTGTTCCTCGTTTCATCTCAACGGTG TTGCACTATGCTTACTGTACGCTAATGAAAATAAAACAGCATCGTGAAGG ACCGTTCTCGTCCTTGCGAGAATCCTTCAAGAAGGTCGTTCGCAAAAGCC CTTTCTCTACCTCCCGTATGGCAAAGGACACGGTTGACGATGTACTCAAC TCCGAAGCCTTTCTGAACAAGAAAGTCGAGATGTTGAAGAAACAAATCGC GGCTACGCAGAAAAATACCGAAGAAGTGGAAGCAGAGGGAGCTAAAAACT GGGAAGAATGGGGACCGCAGGTAAGGTCACTGAATAGAGCAGCATTCTGT CGTGGTGGTATTTGCGCGCCTATCTTGTTTTCATTTGGTCTACATTACAT GACATGTTGCGTTGGTCTAGGTGCGCGCAACGACTGTGTAGGAGGCAGGT CATCGCTAGTCGCGGATTTCATTTTGGTCGGTTCCCTCAATCAATCAATC CTGGGCAGCGCAAGAGTCATAACGGAGTTCAACTGAGAGCATGCGGATGC TCTTGTTTTGGTGGATCTAGGTGTGATTTACTCGACATGCGATTAGAACT GTAGGTTGTACTTTCGAATACAGCAAAGTTTGATGTTCATTTCATGCTGG GTCCTCATCATGATCATTCAAGCTCATGGCTCAAATAAGGTCATCCAAAC CGCCAGCCCCCCACAATGCTCTTCTCCTTTTGTTTTCAGCCTACATGTCG ATTTGTTATCTTCAATAACTGTATTTATTGCCGTGCTTGATCTATTATTG TGCCTGTTCATAAGGTGGAACGCTTACAGAAGGAATTTACGTTGATAAAG AATCGCGGGGGCGAGGAGGCGATACGGGGGAGGAACAAGGGTAAAGCCGA GGCTATAAACGACATTTTGGGCGTAGCGGACAACTTTGAACGAGCAGCTG CTGCCATAGCCCCGGAGACAGACGGCGAGAGGGCAGTCGTAGAGTACTAC AAGGGGGTGTACGACACCATGATGGGTTGTCTGGAGAGTCTGGGCCTGGA GGAGGTGGAAAACGTGAGTGACGAACGTTGATCTCCAAAGTGCTTGTTCA AAATAACCAAATAAGACTTGCGCAATTCTGAGAAAAAGAAAACAACTATG TGGAAACAAATGGTCTAGAATTGAAATGGATGGAGCACCGACTGTACTTG GTGGATGTCGTGGCTCACCACTCCATCGGGGCCAGCAGATGTTGTGCGTT TACTCCACCGAAGGAGTGATCTTGTTCACGTTGTACGTGTGGTTGTTATC CCGTTTCGTTGCTGTGAAAATACAATTCACAGATCGGAGCACCGTTTGAC TACAACATGCACAACGCGATCATGCGCGAACCATCCACGGAATTTGGTGA AGACGTGGTCTGCAAGGTATGTGCAAGATAAGAAAGGTCCACCTTGTCAC CTGCAATTTATACGATAGTGACACATAATCCAGTTAATTCAAGTGTTCGC TCTCCAGTTGCTTCAAGTCGAGCCGCCCTTCCATTGATGGTACATGGTCT CCCTAAGATCCGACATACATACTTATCAGATTTTTTGCAATCAATCAACA CCGCTAATTTGTGTGGTAAACGTGCTCCGTGTTGTGTTGCAAATGTGCAG GTTTTCCAGAAGGGCTACAGGGTTGGTGACACCCTGGTTCGACCGGCCAT GGTGGCGGTGGCGAGTCCGTAGGCGTCGGTTTTGGTTGTTGAACGGCACG TTGGCTGAAGATATGTAGTTCCCGTAATAATGTAGCGATATTGGCGCATT GAATAATACCCAAAACTACGGATATCACGCAGGCAGCGCTCATAGCGCAG TTGACCCCAATATACATACATGATATGAAAACAACCAACCTTGAGCTTGA AAAAATCAATGACATCCGGTCTTCAGTTCCGCCCGATTTTCCAATATAGA ACAATCAAGGGTAGGGTTTCTCCTGGAATTTAAAGGAGTTGAGAAAGGGG GCGGCAACTCGGAGGCATAGAAGAGAAACGTCTTCCGTTAAGTTCATGGC ACAATTTTATGCATATACCACAACCTCTGGGCCAGACGACAAGCTGCTGC TGTGCTATCTTAGCAATATATTCATGGCATGTGCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1547:3817..6853-

>mRNA_H-paniculata_contig1547.3200.1 ID=mRNA_H-paniculata_contig1547.3200.1|Name=mRNA_H-paniculata_contig1547.3200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig1547:3817..6853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTGCACGATACGTTCTCTTGTAACAGTGGCTTCCATCCTGGTGGC
TAACGGTGTGTGTGCGTTTGTGAATGTCAACGGGATCACAAGCAGTGTTG
TGAGCAACGGACGACACTTGTGCGTCCCTGCTAAGTCCACCGCTCCTGTA
TCGCACCGAAGCTCGAGGCGATGGGGGAAGTCAGAGAAGGAGATGATGAA
AGATGGAAGCAGAGGAGTCGGTGGTGTTGACAAGAAGATGACGTGCACGA
TACGTTCTCTTGTAACAGTGGCTTCCATCCTGGTGGCTAACGGTGTGTGT
GCGTTTGTGAATGTCAACGGGATCACAAGCAGTGTTGTGAGCAACGGACG
ACACTTGTGCGTCCCTGCTAAGTCCACCGCTCCTGTATCGCACCGAAGCT
CGAGGCGATGGGGGAAGTCAGAGAAGGAGATGATGAAAGATGGAAGCAGA
GGAGTCGGTGGTGTTGACAAGAAGCATCGTGAAGGACCGTTCTCGTCCTT
GCGAGAATCCTTCAAGAAGGTCGTTCGCAAAAGCCCTTTCTCTACCTCCC
GTATGGCAAAGGACACGGTTGACGATGTACTCAACTCCGAAGCCTTTCTG
AACAAGAAAGTCGAGATGTTGAAGAAACAAATCGCGGCTACGCAGAAAAA
TACCGAAGAAGTGGAAGCAGAGGGAGCTAAAAACTGGGAAGAATGGGGAC
CGCAGCATCGTGAAGGACCGTTCTCGTCCTTGCGAGAATCCTTCAAGAAG
GTCGTTCGCAAAAGCCCTTTCTCTACCTCCCGTATGGCAAAGGACACGGT
TGACGATGTACTCAACTCCGAAGCCTTTCTGAACAAGAAAGTCGAGATGT
TGAAGAAACAAATCGCGGCTACGCAGAAAAATACCGAAGAAGTGGAAGCA
GAGGGAGCTAAAAACTGGGAAGAATGGGGACCGCAGGTGGAACGCTTACA
GAAGGAATTTACGTTGATAAAGAATCGCGGGGGCGAGGAGGCGATACGGG
GGAGGAACAAGGGTAAAGCCGAGGCTATAAACGACATTTTGGGCGTAGCG
GACAACTTTGAACGAGCAGCTGCTGCCATAGCCCCGGAGACAGACGGCGA
GAGGGCAGTCGTAGAGTACTACAAGGGGGTGTACGACACCATGATGGGTT
GTCTGGAGAGTCTGGGCCTGGAGGAGGTGGAAAACGTGGAACGCTTACAG
AAGGAATTTACGTTGATAAAGAATCGCGGGGGCGAGGAGGCGATACGGGG
GAGGAACAAGGGTAAAGCCGAGGCTATAAACGACATTTTGGGCGTAGCGG
ACAACTTTGAACGAGCAGCTGCTGCCATAGCCCCGGAGACAGACGGCGAG
AGGGCAGTCGTAGAGTACTACAAGGGGGTGTACGACACCATGATGGGTTG
TCTGGAGAGTCTGGGCCTGGAGGAGGTGGAAAACATCGGAGCACCGTTTG
ACTACAACATGCACAACGCGATCATGCGCGAACCATCCACGGAATTTGGT
GAAGACGTGGTCTGCAAGATCGGAGCACCGTTTGACTACAACATGCACAA
CGCGATCATGCGCGAACCATCCACGGAATTTGGTGAAGACGTGGTCTGCA
AGGTTTTCCAGAAGGGCTACAGGGTTGGTGACACCCTGGTTCGACCGGCC
ATGGTGGCGGTGGCGAGTCCGTAGGTTTTCCAGAAGGGCTACAGGGTTGG
TGACACCCTGGTTCGACCGGCCATGGTGGCGGTGGCGAGTCCGTAG
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