mRNA_H-paniculata_contig1547.3200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI) HSP 1 Score: 301 bits (772), Expect = 8.050e-97 Identity = 172/290 (59.31%), Postives = 205/290 (70.69%), Query Frame = 3
Query: 105 MTCTIRSLVTVASILVANGVCAFVNVNGITSSVVSNGRHLCVPAKSTAPVSHRSSRRWGKSEKEMMKDGSRGVGGVDKKHREGPFSSLRESFKKVVRKSPFSTSRMAKDTVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVASP 974
M+C +RSL VA++L AN CAFV+ G+TS GR + PA ++ RSSRRW K++ D G GG + GPFSS + + PFS + KD VDD+LNS+AFLNKKVEML+KQI ATQ + +A+ + W EWGPQV+RL+KEF+ +K RGGE + NKGKAEAIN+ILGVADNFERAA AI+ ETDGERAVV YYK YD MM CLE L L EV+ IGAPFDYN+HNAIMRE + EF EDVVCKVFQKGY+VGDTLVRPAMVAVA P
Sbjct: 1 MSCAMRSLFAVAAMLAANEACAFVHPAGLTSLA---GRSVAAPACTSV---ERSSRRWDKAQ---QLDAGNGDGGSSGEQPAGPFSSWVKKTAGRFGRGPFSRAAK-KDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVP 280
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.640e-56 Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 3
Query: 435 VDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
VDD+L S AFL KKVE+LKKQ+A T++ AE K WEEWGPQ++RL+ EFT +K R + + N+ K +A+ IL V DNFERA+ AI +TDGE+AVV YYKGVY+ M + LG+E V +G PFDYN+H A+MR+PS E ED+V + F KG+ VG TL+RPAMVAV+S
Sbjct: 63 VDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 241
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI) HSP 1 Score: 172 bits (435), Expect = 4.900e-47 Identity = 82/178 (46.07%), Postives = 119/178 (66.85%), Query Frame = 3
Query: 438 DDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
DD+L + FL KK+E+L KQIA ++ E K WEEWGPQ+ERL++EF ++ R + + K + + +IL V+DNF RA+ AI+P T+GE AVV+YYK +Y+ M +LG++ + +G PFDYN+H A+MR+ S+EF ED+VC KG+ VG L+RPAMVAV++
Sbjct: 68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQ-SSEFDEDIVCLELTKGFMVGKELIRPAMVAVST 244
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.440e-41 Identity = 70/180 (38.89%), Postives = 116/180 (64.44%), Query Frame = 3
Query: 432 TVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
+VDD+LN+ AFL KK+E L K + Q+ +E +AE AK WEEWGPQ+ R ++E+ ++ R + K + + ++L DNF+RA AA P+++ E+A ++ Y ++D + LG++E+ +G PFD+N+H+A+M++PS E+ ED +C + KGY V ++RPAMV V++
Sbjct: 117 SVDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSA 296
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA) HSP 1 Score: 146 bits (369), Expect = 2.180e-37 Identity = 73/177 (41.24%), Postives = 113/177 (63.84%), Query Frame = 3
Query: 438 DDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVA 968
DD+L+S AFL +KVE+L+ IA T+++ EEWGPQ+E L++E+T I+ R E+ G + K + IL + DNF+RA+ I ET+ ++A+ YK Y ++ + +G+ EVE +G FDY +H A+M+ P +E+ E VC+ FQKG+ +G++L+RPAMVAVA
Sbjct: 71 DDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S2VF25_9STRA (GrpE protein homolog n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF25_9STRA) HSP 1 Score: 145 bits (367), Expect = 6.990e-37 Identity = 72/177 (40.68%), Postives = 111/177 (62.71%), Query Frame = 3
Query: 441 DVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
D+LNS AFL +K+E+L+ IA + +TEE A EWG Q++ LQKE+ I+ R + +G + ++L V DN++RA A+ P D E + YK +D +M LG+EE++ +G FDY +H A+M++PS E+ E +VC+ FQKG+++GDTL+R +MVAVA+
Sbjct: 91 DILNSPAFLQRKLEVLQSDIAKVEADTEEARARLEAGKAEWGGQLDELQKEYQNIQERLNSQNKQGDTMAIVQVTREMLKVLDNYDRAFGAVTPSGDIEAEIEADYKSTWDDIMQTFSDLGVEEIKTVGVEFDYEVHQAVMQKPSDEYEEGIVCEEFQKGFKIGDTLIRASMVAVAA 267
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA) HSP 1 Score: 145 bits (365), Expect = 8.220e-37 Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 3
Query: 435 VDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVA 968
V+D+L+S AFL +K+E+L+ IA T++ EEWGPQ+E LQ+E+T I+ R E+ G + K + IL + DNF+RA+ I ET+ E+ + YK Y ++ +G+ EVE +G FDY +H A+M+ P TE+ E VVCK FQKG+ + ++L+RPAMVAVA
Sbjct: 70 VNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA) HSP 1 Score: 144 bits (362), Expect = 5.640e-36 Identity = 72/177 (40.68%), Postives = 109/177 (61.58%), Query Frame = 3
Query: 438 DDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVA 968
+D+LNS AFL +K+E+L+ IA ++ EEWGPQ+E LQ+E+ I+ R E+ G + K + +L + DNF+RA+ I ETD E+ + YK Y ++ + +G+ EVE +G+ FDY +H A+M+ P TE+ E VC+ FQKG+ +G+ L+RPAMVAVA
Sbjct: 107 NDILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA) HSP 1 Score: 140 bits (354), Expect = 2.690e-35 Identity = 71/187 (37.97%), Postives = 116/187 (62.03%), Query Frame = 3
Query: 411 TSRMAKDTVDDVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
T + D+ D+LNS AFL +K+++LK IA ++ + + EW Q++ LQKE+ I+ R G++ +G + + + L V DNF+RA I ETD ++ + E Y+ Y+ ++ L LG+EEV+ +G FDY +H A+M++PS E+ E +V + FQKG+++GDTL+R AMV+VA+
Sbjct: 56 TPQSNNDSSTDILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Match: A0A7R9WM61_9STRA (GrpE protein homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM61_9STRA) HSP 1 Score: 134 bits (337), Expect = 8.190e-33 Identity = 67/177 (37.85%), Postives = 109/177 (61.58%), Query Frame = 3
Query: 441 DVLNSEAFLNKKVEMLKKQIAATQKNTEEVEAEGAKNWEEWGPQVERLQKEFTLIKNRGGEEAIRGRNKGKAEAINDILGVADNFERAAAAIAPETDGERAVVEYYKGVYDTMMGCLESLGLEEVENIGAPFDYNMHNAIMREPSTEFGEDVVCKVFQKGYRVGDTLVRPAMVAVAS 971
D+LNS AFL +K+E+L+ I + EEW Q+++L+ E+ IK+R + + +E + IL + DNFER + PETD E+A+ E Y+ V+ ++ LE LG+++VE +G FDY +H A+M+ S E+ E+++C+ +QKG+ +G+ L+RPAMVAVA+
Sbjct: 70 DILNSPAFLQRKLEVLETDIKKADXXXXXXXXXXSAGKEEWQDQLDKLEVEYKTIKDRMSAQTDQNDVVATSEVASAILELVDNFERGFGIVIPETDEEKAIDEEYRKVHSDILATLEKLGVKQVETVGKEFDYEVHQAVMQRASEEYEENIICEEYQKGFVIGEKLIRPAMVAVAA 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1547.3200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1547.3200.1 >prot_H-paniculata_contig1547.3200.1 ID=prot_H-paniculata_contig1547.3200.1|Name=mRNA_H-paniculata_contig1547.3200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp MTCTIRSLVTVASILVANGVCAFVNVNGITSSVVSNGRHLCVPAKSTAPVback to top mRNA from alignment at H-paniculata_contig1547:3817..6853- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1547.3200.1 ID=mRNA_H-paniculata_contig1547.3200.1|Name=mRNA_H-paniculata_contig1547.3200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3037bp|location=Sequence derived from alignment at H-paniculata_contig1547:3817..6853- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1547:3817..6853- >mRNA_H-paniculata_contig1547.3200.1 ID=mRNA_H-paniculata_contig1547.3200.1|Name=mRNA_H-paniculata_contig1547.3200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig1547:3817..6853- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |