mRNA_H-paniculata_contig14834.2878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14834.2878.1
Unique NamemRNA_H-paniculata_contig14834.2878.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 6.170e-33
Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRD--IPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDE 462
            LP G+KAI  KW+FK K K DGS+  YK RLVA+G+SQ  G D  ET  PVA+ +++R   SL AKH+LEL+ MDV+ A++N+ ++E+++ ++P   +          V +L++SL  LKQ+ R W  T D F++ IG  +S  D C+ + R +
Sbjct:   82 LPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD 235          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR)

HSP 1 Score: 134 bits (336), Expect = 9.130e-33
Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDEWGRQTF 480
            LP G+K I  KW+FK KP  +G    YK RLVA+GFSQ  GED  ET APV +  T+R   SL A   L +  +DV  AY+N+P+EEEL+ K PP F    ++   V  LR+SL  LKQS R W     D L  +G +++  D CL   +++ G +T+
Sbjct:   65 LPPGKKPISLKWVFKVKPNSEGQADTYKARLVARGFSQRYGEDYDETFAPVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTY 221          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.170e-32
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDI-PFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444
            LP G++ I + W+   K  +DG +V  K R +A+G+SQ  G D  +T APVA M+T+R   +L    DLEL++MDVD AY+ + +EE++  K PP +  +  +    VCRLR+SL  LKQSGRNW    D +  G     S+ DPCL
Sbjct:   96 LPKGERCISSGWVESDKRDKDGVIVKRKARFIAKGYSQKYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYAFHPSSADPCL 242          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 130 bits (326), Expect = 5.490e-31
Identity = 68/152 (44.74%), Postives = 94/152 (61.84%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDE 462
            LP G++ I  KW+FK+K  + G++  YK RLVA+GFSQ++G D  ET APV R  T+R  F++ A  ++ +  +DV  AY+N  ++EELF + PP FS  + D   V RLR SL  LKQS R W     D L  +G + +  DPCL  SR+E
Sbjct:  394 LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTDGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNE 543          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.780e-31
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPF-SRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444
            LP G++ I + W+   K  ++G +V  K R +A+G+SQ  G D   T APVA ++T+R   +L    DLEL++MDVD AY+ + +EE+++ K PP +  + S     VCRLR+SL  LKQSGRNW    D +  G G   S+TDPCL
Sbjct:  269 LPKGERCISSGWVEADKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCL 415          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.540e-30
Identity = 62/149 (41.61%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFS---PFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444
            LP G++ I + W+   K  ++G +V  K R +A+G+SQ  G D   T APVA ++T+R   ++    DLEL++MDVD AY+ + +EE+++ K PP +    P   ++  VCRLR+SL  LKQSGRNW    D +  G G   S+ DPCL
Sbjct:   11 LPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCL 157          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 127 bits (318), Expect = 1.670e-30
Identity = 67/152 (44.08%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDE 462
            LP G++ I  KW+FK+K  + G++  YK RLVA+GFSQ++G D  +T APV R  T+R  F++VA  ++ +  +DV  AY+N  ++EELF + PP FS  +     V RLR SL  LKQS R W     D L  +G + +  DPCL  SR E
Sbjct:   14 LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDKTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSE 163          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5N6NSI7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NSI7_9ASTR)

HSP 1 Score: 128 bits (322), Expect = 1.830e-30
Identity = 62/146 (42.47%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444
            LPVG+KAI +KW++K K K +G V  YK RLVA+G++Q+EG D  +T APVA++ T+RT  +L  K D  +  +DV+ A+++  +EEE++ K+P  FS  +++   VCRL++S+  LKQ+ RNW       L+ +G ++S  D  L
Sbjct:  335 LPVGKKAIDSKWVYKVKHKPNGEVERYKARLVAKGYTQLEGVDYQDTFAPVAKLVTMRTLLALAVKRDWHIHQLDVNNAFLHGDLEEEVYMKVPQGFS--NKEETRVCRLQKSIYGLKQASRNWYYKFTSVLIELGYKQSVADSSL 478          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6R0A3_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R0A3_TRIMR)

HSP 1 Score: 123 bits (308), Expect = 2.080e-30
Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 1
Query:    7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444
            L  G++ I  KW+FK+K  + G++  YK RL+A+GFSQ++G D  E+ APV R  T+R  F++ A   + ++ +DV  AY+N  ++EELF + PP F   + D   V RLR SL +LKQS R W     D L  +G + +  DPCL
Sbjct:   39 LAPGKRTISAKWVFKAKHDDQGNIHTYKARLIARGFSQIQGRDYDESFAPVVRHETVRILFAVAAMKTMHVQHIDVKTAYLNGKLDEELFVEPPPAFDQPTTDGK-VLRLRRSLYELKQSARVWNQVATDSLRKLGFRPNRADPCL 183          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A2I0K2Q7_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K2Q7_PUNGR)

HSP 1 Score: 123 bits (308), Expect = 2.220e-30
Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 EGLPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRS 426
            E LP G++ I  KW+FK K + DGSV CYK RL+A+GF+ +EG D  ET A VA++ T+R    +      E+  MDV  A+++  ++EE++ KLPP FS  SR    VCRLR+SL  L+Q+ RNW     D L G G Q+S
Sbjct:  136 ETLPPGKRPIDCKWVFKIKRRADGSVECYKARLIAKGFTLVEGVDFHETFALVAKLVTIRCLLIVAVTRRWEMHQMDVQNAFLHGNLDEEVYIKLPPGFS--SRRGGAVCRLRKSLYGLRQAFRNWYSKFADALRGYGFQQS 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA6.170e-3342.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6Q3I8_TRIMR9.130e-3343.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TH08_9STRA5.170e-3242.86RNA-dependent DNA polymerase n=1 Tax=Nannochlorops... [more]
A0A5S6QN85_TRIMR5.490e-3144.74Integrase catalytic domain-containing protein n=2 ... [more]
W7T0D1_9STRA6.780e-3143.54Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA1.540e-3041.61Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A5S6QJX2_TRIMR1.670e-3044.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NSI7_9ASTR1.830e-3042.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A5S6R0A3_TRIMR2.080e-3041.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0K2Q7_PUNGR2.220e-3045.77Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14834contigH-paniculata_contig14834:2959..3641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score81.6
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog7425.NV17808-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size683
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14834.2878.1prot_H-paniculata_contig14834.2878.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14834 3195..3521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.3355844-UTR-H-paniculata_contig14834:2958..31941622929180.3355844-UTR-H-paniculata_contig14834:2958..3194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14834 2959..3194 -
1691480762.3386302-UTR-H-paniculata_contig14834:2958..31941691480762.3386302-UTR-H-paniculata_contig14834:2958..3194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14834 2959..3194 -
1622929180.3672357-UTR-H-paniculata_contig14834:3521..36411622929180.3672357-UTR-H-paniculata_contig14834:3521..3641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14834 3522..3641 -
1691480762.3579001-UTR-H-paniculata_contig14834:3521..36411691480762.3579001-UTR-H-paniculata_contig14834:3521..3641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14834 3522..3641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.3513703-CDS-H-paniculata_contig14834:3194..35211622929180.3513703-CDS-H-paniculata_contig14834:3194..3521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14834 3195..3521 -
1691480762.3504593-CDS-H-paniculata_contig14834:3194..35211691480762.3504593-CDS-H-paniculata_contig14834:3194..3521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14834 3195..3521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14834.2878.1

>prot_H-paniculata_contig14834.2878.1 ID=prot_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEE
LFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQ
RSTTDPCL*
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mRNA from alignment at H-paniculata_contig14834:2959..3641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14834.2878.1 ID=mRNA_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=683bp|location=Sequence derived from alignment at H-paniculata_contig14834:2959..3641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGGTTACCGGTAGGGCAGAAGGCAATTTGTACCAAATGGATTTTCAA GAGCAAACCGAAGGAGGACGGCAGCGTGGTATGCTACAAAGGGCGACTCG TGGCTCAAGGGTTTTCACAGATGGAGGGTGAAGATATATTTGAAACCAGT GCCCCCGTAGCTCGCATGTCGACATTGCGTACCGGGTTTAGCCTGGTCGC CAAACATGATCTCGAACTAGAAGACATGGACGTAGATGTAGCCTATATGA ACGCCCCCGTAGAAGAGGAGCTGTTTTTTAAGCTACCCCCCGAGTTTTCC CCTTTCTCCCGAGACATACCATTTGTGTGCCGCCTGCGTGAAAGCCTGGA GGACCTCAAGCAGAGCGGCCGAAACTGGAAGATCACTCCTGACGATTTTC TTGTTGGGATAGGAATCCAGCGTTCCACTACCGACCCATGCTTGTAGTTG TCTCGCGACGAGTGGGGGAGACAGACATTCTCGTGGCCGTCGATGTTGAC GACCTGGTCATTACTGGACGTCGTAAGAAAGTAGACGAGTTCAAGCACAA CATAAGTCGGCGTTTCAGGATGAAAGACTTGGTCTCCCTCTCGCGCGTGT TGGGAATAGAAGTACGACGTGACGGCCCAAATGGAGCCATATCAATATCC AAAGGTAGCTACATCCGCGAGGTACTGAAAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14834:2959..3641-

>mRNA_H-paniculata_contig14834.2878.1 ID=mRNA_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig14834:2959..3641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGTGAAGATATATTTGAAACCAGTGCCCCCGTAGCTCGCATGTC
GACATTGCGTACCGGGTTTAGCCTGGTCGCCAAACATGATCTCGAACTAG
AAGACATGGACGTAGATGTAGCCTATATGAACGCCCCCGTAGAAGAGGAG
CTGTTTTTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATACC
ATTTGTGTGCCGCCTGCGTGAAAGCCTGGAGGACCTCAAGCAGAGCGGCC
GAAACTGGAAGATCACTCCTGACGATTTTCTTGTTGGGATAGGAATCCAG
CGTTCCACTACCGACCCATGCTTGTAGATGGAGGGTGAAGATATATTTGA
AACCAGTGCCCCCGTAGCTCGCATGTCGACATTGCGTACCGGGTTTAGCC
TGGTCGCCAAACATGATCTCGAACTAGAAGACATGGACGTAGATGTAGCC
TATATGAACGCCCCCGTAGAAGAGGAGCTGTTTTTTAAGCTACCCCCCGA
GTTTTCCCCTTTCTCCCGAGACATACCATTTGTGTGCCGCCTGCGTGAAA
GCCTGGAGGACCTCAAGCAGAGCGGCCGAAACTGGAAGATCACTCCTGAC
GATTTTCTTGTTGGGATAGGAATCCAGCGTTCCACTACCGACCCATGCTT
GTAG
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