prot_H-paniculata_contig14834.2878.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14834.2878.1
Unique Nameprot_H-paniculata_contig14834.2878.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length109
Homology
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.130e-22
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPF-SRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D   T APVA ++T+R   +L    DLEL++MDVD AY+ + +EE+++ K PP +  + S     VCRLR+SL  LKQSGRNW    D +  G G   S+TDPCL
Sbjct:  309 GYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCL 415          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.270e-21
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDI-PFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D  +T APVA M+T+R   +L    DLEL++MDVD AY+ + +EE++  K PP +  +  +    VCRLR+SL  LKQSGRNW    D +  G     S+ DPCL
Sbjct:  136 GYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYAFHPSSADPCL 242          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.150e-21
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDI-PFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D   T APVA M+T+R   +L    DLEL++MDVD AY+ + +EE+++ K PP +  +  +    VCRLR+SL  LKQSGRNW    D +  G G+  S  DPCL
Sbjct:  271 GYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCL 377          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.520e-20
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFS---PFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D   T APVA ++T+R   ++    DLEL++MDVD AY+ + +EE+++ K PP +    P   ++  VCRLR+SL  LKQSGRNW    D +  G G   S+ DPCL
Sbjct:   51 GYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCL 157          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.100e-20
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPF-SRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D   T APVA ++T+R   +L    DLEL++MDV+ AY+ + +EE+++ K PP +  + S     VCRLR+SL  LKQSGRNW    D +  G G   S+ DPCL
Sbjct:   51 GYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCL 157          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.070e-20
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDI-PFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D  +T APVA M+T+R   +L    DLEL++MDVD AY+ + +EE+++ K P  +  +  +    VCRLR+SL  LKQSGRNW    D +  G G   S+ DPCL
Sbjct:  569 GYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCL 675          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.760e-19
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPP---EFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G +   T APVA ++T+R   ++    DLEL++MDVD AY+ + +EE+++ K PP   ++ P   ++  VC L +SL  LKQSG NW    D +  G G   S+TDPCL
Sbjct:   35 GYEYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEEL--VCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSSTDPCL 141          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TWT0_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWT0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.600e-19
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLP---PEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D   T APVA M+T+R   +L    D EL++MDV+ AY+ + +EE+++ K P    ++ P   ++  VCRLR+SL  LKQSGRNW    D +  G G   S+ DPCL
Sbjct:  242 GYDYLHTCAPVASMTTIRLILALACILDSELDNMDVETAYLQSDLEEKVYIKQPIGYEQYGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCL 348          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.470e-19
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    5 DIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPP---EFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            D   T APVA M+ +R   +L    DLEL++MDVD AY+ + +EE+++ K PP   ++ P   ++  +CRL +SL  LKQSGRNW    D++  G     S+ DPCL
Sbjct:   95 DYLHTYAPVASMTRIRLILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEEL--LCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSSADPCL 199          
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.690e-18
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    3 GEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPF-SRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 108
            G D   T APVA ++T+R   ++    DLEL++MDV+ AY+ + +EE+++ K P  +  + S     VCRLR+SL  LKQSGRNW    D +  G G   S+ DPCL
Sbjct:  491 GYDYLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCL 597          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T0D1_9STRA5.130e-2246.73Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TH08_9STRA5.270e-2144.86RNA-dependent DNA polymerase n=1 Tax=Nannochlorops... [more]
W7TJ26_9STRA6.150e-2145.79Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA1.520e-2044.04Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA2.100e-2044.86Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA4.070e-2044.86Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9Y7_9STRA1.760e-1941.28Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
W7TWT0_9STRA3.600e-1943.12Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJI6_9STRA5.470e-1942.06Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
W7T0T3_9STRA1.690e-1842.99Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..105
e-value: 4.0E-16
score: 59.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14834contigH-paniculata_contig14834:3195..3521 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14834.2878.1mRNA_H-paniculata_contig14834.2878.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14834 2959..3641 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14834.2878.1 ID=prot_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEE
LFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQ
RSTTDPCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2