mRNA_H-paniculata_contig14834.2878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 130 bits (327), Expect = 6.170e-33 Identity = 65/154 (42.21%), Postives = 98/154 (63.64%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRD--IPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDE 462 LP G+KAI KW+FK K K DGS+ YK RLVA+G+SQ G D ET PVA+ +++R SL AKH+LEL+ MDV+ A++N+ ++E+++ ++P + V +L++SL LKQ+ R W T D F++ IG +S D C+ + R + Sbjct: 82 LPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD 235
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR) HSP 1 Score: 134 bits (336), Expect = 9.130e-33 Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDEWGRQTF 480 LP G+K I KW+FK KP +G YK RLVA+GFSQ GED ET APV + T+R SL A L + +DV AY+N+P+EEEL+ K PP F ++ V LR+SL LKQS R W D L +G +++ D CL +++ G +T+ Sbjct: 65 LPPGKKPISLKWVFKVKPNSEGQADTYKARLVARGFSQRYGEDYDETFAPVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTY 221
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA) HSP 1 Score: 126 bits (317), Expect = 5.170e-32 Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDI-PFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444 LP G++ I + W+ K +DG +V K R +A+G+SQ G D +T APVA M+T+R +L DLEL++MDVD AY+ + +EE++ K PP + + + VCRLR+SL LKQSGRNW D + G S+ DPCL Sbjct: 96 LPKGERCISSGWVESDKRDKDGVIVKRKARFIAKGYSQKYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYAFHPSSADPCL 242
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR) HSP 1 Score: 130 bits (326), Expect = 5.490e-31 Identity = 68/152 (44.74%), Postives = 94/152 (61.84%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDE 462 LP G++ I KW+FK+K + G++ YK RLVA+GFSQ++G D ET APV R T+R F++ A ++ + +DV AY+N ++EELF + PP FS + D V RLR SL LKQS R W D L +G + + DPCL SR+E Sbjct: 394 LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTDGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNE 543
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA) HSP 1 Score: 129 bits (325), Expect = 6.780e-31 Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPF-SRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444 LP G++ I + W+ K ++G +V K R +A+G+SQ G D T APVA ++T+R +L DLEL++MDVD AY+ + +EE+++ K PP + + S VCRLR+SL LKQSGRNW D + G G S+TDPCL Sbjct: 269 LPKGERCISSGWVEADKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCL 415
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.540e-30 Identity = 62/149 (41.61%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFS---PFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444 LP G++ I + W+ K ++G +V K R +A+G+SQ G D T APVA ++T+R ++ DLEL++MDVD AY+ + +EE+++ K PP + P ++ VCRLR+SL LKQSGRNW D + G G S+ DPCL Sbjct: 11 LPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCL 157
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR) HSP 1 Score: 127 bits (318), Expect = 1.670e-30 Identity = 67/152 (44.08%), Postives = 93/152 (61.18%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL*LSRDE 462 LP G++ I KW+FK+K + G++ YK RLVA+GFSQ++G D +T APV R T+R F++VA ++ + +DV AY+N ++EELF + PP FS + V RLR SL LKQS R W D L +G + + DPCL SR E Sbjct: 14 LPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDKTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTGGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSE 163
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5N6NSI7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NSI7_9ASTR) HSP 1 Score: 128 bits (322), Expect = 1.830e-30 Identity = 62/146 (42.47%), Postives = 97/146 (66.44%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444 LPVG+KAI +KW++K K K +G V YK RLVA+G++Q+EG D +T APVA++ T+RT +L K D + +DV+ A+++ +EEE++ K+P FS +++ VCRL++S+ LKQ+ RNW L+ +G ++S D L Sbjct: 335 LPVGKKAIDSKWVYKVKHKPNGEVERYKARLVAKGYTQLEGVDYQDTFAPVAKLVTMRTLLALAVKRDWHIHQLDVNNAFLHGDLEEEVYMKVPQGFS--NKEETRVCRLQKSIYGLKQASRNWYYKFTSVLIELGYKQSVADSSL 478
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A5S6R0A3_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R0A3_TRIMR) HSP 1 Score: 123 bits (308), Expect = 2.080e-30 Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 1 Query: 7 LPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRSTTDPCL 444 L G++ I KW+FK+K + G++ YK RL+A+GFSQ++G D E+ APV R T+R F++ A + ++ +DV AY+N ++EELF + PP F + D V RLR SL +LKQS R W D L +G + + DPCL Sbjct: 39 LAPGKRTISAKWVFKAKHDDQGNIHTYKARLIARGFSQIQGRDYDESFAPVVRHETVRILFAVAAMKTMHVQHIDVKTAYLNGKLDEELFVEPPPAFDQPTTDGK-VLRLRRSLYELKQSARVWNQVATDSLRKLGFRPNRADPCL 183
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Match: A0A2I0K2Q7_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K2Q7_PUNGR) HSP 1 Score: 123 bits (308), Expect = 2.220e-30 Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 1 EGLPVGQKAICTKWIFKSKPKEDGSVVCYKGRLVAQGFSQMEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEELFFKLPPEFSPFSRDIPFVCRLRESLEDLKQSGRNWKITPDDFLVGIGIQRS 426 E LP G++ I KW+FK K + DGSV CYK RL+A+GF+ +EG D ET A VA++ T+R + E+ MDV A+++ ++EE++ KLPP FS SR VCRLR+SL L+Q+ RNW D L G G Q+S Sbjct: 136 ETLPPGKRPIDCKWVFKIKRRADGSVECYKARLIAKGFTLVEGVDFHETFALVAKLVTIRCLLIVAVTRRWEMHQMDVQNAFLHGNLDEEVYIKLPPGFS--SRRGGAVCRLRKSLYGLRQAFRNWYSKFADALRGYGFQQS 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14834.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14834.2878.1 >prot_H-paniculata_contig14834.2878.1 ID=prot_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp MEGEDIFETSAPVARMSTLRTGFSLVAKHDLELEDMDVDVAYMNAPVEEEback to top mRNA from alignment at H-paniculata_contig14834:2959..3641- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14834.2878.1 ID=mRNA_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=683bp|location=Sequence derived from alignment at H-paniculata_contig14834:2959..3641- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14834:2959..3641- >mRNA_H-paniculata_contig14834.2878.1 ID=mRNA_H-paniculata_contig14834.2878.1|Name=mRNA_H-paniculata_contig14834.2878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig14834:2959..3641- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |