mRNA_H-paniculata_contig14693.2800.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14693.2800.1
Unique NamemRNA_H-paniculata_contig14693.2800.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A6H5KZP7_9PHAE (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP7_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.330e-55
Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            RDYGG+SRF G VETVKCFENNPLVRQRLT EDG GKVLVVDGGGSLRRALMGDQLAAG +QN WRG+IINGA+RDS+ I KL  GCKALGT+P KSEKKVPG   + V
Sbjct:   42 RDYGGVSRFCGRVETVKCFENNPLVRQRLTKEDGAGKVLVVDGGGSLRRALMGDQLAAGGLQNGWRGVIINGAVRDSSEIGKLPFGCKALGTMPRKSEKKVPGEQGVPV 150          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A836C6L7_9STRA (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6L7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.360e-42
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            RDYGG+ RFSG + TV+C ENNPLVRQRLT E G G+VLVVDGGGS R AL+GD LAAGAVQN W G+I++G IRDSAAIA+L +G KA+GT P KS K  PG + + V
Sbjct:   32 RDYGGVRRFSGGIATVRCRENNPLVRQRLTKEAGGGRVLVVDGGGSTRCALLGDMLAAGAVQNGWAGVIVHGCIRDSAAIAQLPLGVKAIGTNPTKSGKADPGEADVPV 140          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A2K3D0A3_CHLRE (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D0A3_CHLRE)

HSP 1 Score: 136 bits (343), Expect = 1.460e-38
Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            RD+GG  RFSG+V TV+C+ENNPLVR+ L  E G G+VLVVDGG S+R AL+GD LA   V+N W GII+NG IRDSA IAK+++G KALGT PLKS K+ PG+  + V
Sbjct:   46 RDFGGKLRFSGQVSTVRCYENNPLVRKALE-EPGMGRVLVVDGGASMRCALLGDMLAESGVKNGWAGIIVNGCIRDSADIAKMALGVKALGTHPLKSSKRDPGLRDVLV 153          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A8J4C4G4_9CHLO (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4C4G4_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 3.320e-38
Identity = 69/109 (63.30%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            RD+GG  RFSG+  TVKC+ENNPLVR+ L  E G G+VLVVDGGGSLR AL+GD LA   V+N W GII+NG IRDSA IA++ +G KALGT PLKS K+ PG   + V
Sbjct:   75 RDFGGKLRFSGQATTVKCYENNPLVRKALE-EPGIGRVLVVDGGGSLRCALLGDMLAENGVKNGWSGIIVNGCIRDSADIARMPLGVKALGTHPLKSSKRDPGQRDVPV 182          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A090M175_OSTTA (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M175_OSTTA)

HSP 1 Score: 133 bits (335), Expect = 4.300e-37
Identity = 67/109 (61.47%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            +DYGGL RF GEV TV CFENNPLVR  L  E G G+VLVVDGGGS R AL+GD LA  A +N W G+I+NG +RDS  IAK ++G KA+GT PLKS K+ PG+  + V
Sbjct:   67 KDYGGLRRFRGEVSTVLCFENNPLVRLALE-EPGLGRVLVVDGGGSERCALLGDNLAETAARNGWSGVIVNGCVRDSEDIAKFNVGVKAIGTHPLKSSKRDPGLRDVPV 174          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: C1E3D9_MICCC (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E3D9_MICCC)

HSP 1 Score: 133 bits (335), Expect = 9.190e-37
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            RD+GG++RFSG   TVKC+ENNPLVR+ L GE G G+VLVVDGGGS+R AL+GD LA  AV N W GI+ING +RDS  I K+ +G KA+   P+KS K+ PGM  + V
Sbjct:   94 RDFGGVTRFSGPASTVKCYENNPLVREAL-GEPGNGRVLVVDGGGSMRCALLGDNLAGMAVSNGWAGIVINGCLRDSEDIGKMRLGVKAIAPHPVKSSKRDPGMREVPV 201          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A150GI59_GONPE (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=3 Tax=Chlamydomonadales TaxID=3042 RepID=A0A150GI59_GONPE)

HSP 1 Score: 131 bits (330), Expect = 1.210e-36
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHV 333
            RD+GG  RFSG+  TVKC+ENNPL  +    E G G+VLVVDGGGSLR AL+GD LA   V+N W GII+NG IRDSA IA++ +G KALGT PLKS K+ PG+  + V
Sbjct:   45 RDFGGKLRFSGQASTVKCYENNPLALE----EPGRGRVLVVDGGGSLRCALLGDMLAENGVKNGWAGIIVNGCIRDSADIARMPLGVKALGTHPLKSSKRDPGLRDVPV 149          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: A0A830HRQ6_9CHLO (4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HRQ6_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 1.930e-36
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMSVIHVLL 339
            RDYGG  +F G   T+KCFENNPLVR+ LT EDG GKVLVVDGGGS+R AL+GD LAA    N W G+I++G +RDS A+ + +IG KA  T PLKS K+  G   + V++
Sbjct:   22 RDYGGRVKFMGTATTIKCFENNPLVRKALTQEDGKGKVLVVDGGGSMRCALLGDMLAAEGASNGWEGVIVDGCVRDSRALKETNIGVKARDTHPLKSSKRDEGERDVDVVV 132          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: UPI000B20D92E (ribonuclease E activity regulator RraA n=1 Tax=Pedobacter lusitanus TaxID=1503925 RepID=UPI000B20D92E)

HSP 1 Score: 129 bits (323), Expect = 2.850e-36
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKK 306
            +D+G +  F G++ TVKCFE NPLVRQ L  +DGTGKVLVVDGGGS R ALMGD +A  A+QN W GIII G IRDS A+++LSIG KAL  +PLKS KK
Sbjct:   25 KDFGAVKAFHGQIVTVKCFEANPLVRQTLE-KDGTGKVLVVDGGGSKRCALMGDNIAELAIQNNWSGIIIFGCIRDSVAVSRLSIGIKALDVVPLKSGKK 123          
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Match: I0Z0K9_COCSC (4-hydroxy-4-methyl-2-oxoglutarate aldolase (Fragment) n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z0K9_COCSC)

HSP 1 Score: 129 bits (323), Expect = 4.080e-36
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    7 RDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLRRALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSEKKVPGMS 321
            RDYGG  RFSG+V T+KCFENNPLVR+ L  E G G+VL VDGGGSLR AL+GD +A  A +N W GI+ING IRDS  I K+ +G KAL T PLKS K+  G++
Sbjct:    1 RDYGGNIRFSGQVTTIKCFENNPLVRKALE-EGGEGRVLAVDGGGSLRCALLGDNIAEMAYKNGWSGILINGCIRDSEDIGKMPLGVKALNTYPLKSSKRDHGLT 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14693.2800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZP7_9PHAE2.330e-5579.824-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
A0A836C6L7_9STRA3.360e-4266.974-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
A0A2K3D0A3_CHLRE1.460e-3862.394-hydroxy-4-methyl-2-oxoglutarate aldolase n=4 Tax... [more]
A0A8J4C4G4_9CHLO3.320e-3863.304-hydroxy-4-methyl-2-oxoglutarate aldolase n=3 Tax... [more]
A0A090M175_OSTTA4.300e-3761.474-hydroxy-4-methyl-2-oxoglutarate aldolase n=2 Tax... [more]
C1E3D9_MICCC9.190e-3759.634-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
A0A150GI59_GONPE1.210e-3660.554-hydroxy-4-methyl-2-oxoglutarate aldolase n=3 Tax... [more]
A0A830HRQ6_9CHLO1.930e-3656.764-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax... [more]
UPI000B20D92E2.850e-3665.00ribonuclease E activity regulator RraA n=1 Tax=Ped... [more]
I0Z0K9_COCSC4.080e-3661.904-hydroxy-4-methyl-2-oxoglutarate aldolase (Fragme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14693contigH-paniculata_contig14693:2720..3542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score137.5
Seed ortholog evalue3.9e-30
Seed eggNOG ortholog3067.XP_002949311.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
EggNOG OGs2S32I@2759,34KHJ@3041,388N9@33090,COG0684@1
Ec32 ortholog descriptionRibonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
Ec32 orthologEc-13_002280.1
COG Functional cat.H
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.924757-CDS-H-paniculata_contig14693:2719..29231622929168.924757-CDS-H-paniculata_contig14693:2719..2923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14693 2720..2923 +
1691480758.2241254-CDS-H-paniculata_contig14693:2719..29231691480758.2241254-CDS-H-paniculata_contig14693:2719..2923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14693 2720..2923 +
1622929168.9419909-CDS-H-paniculata_contig14693:3401..35421622929168.9419909-CDS-H-paniculata_contig14693:3401..3542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14693 3402..3542 +
1691480758.2341185-CDS-H-paniculata_contig14693:3401..35421691480758.2341185-CDS-H-paniculata_contig14693:3401..3542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14693 3402..3542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14693.2800.1prot_H-paniculata_contig14693.2800.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14693 2720..3542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14693.2800.1

>prot_H-paniculata_contig14693.2800.1 ID=prot_H-paniculata_contig14693.2800.1|Name=mRNA_H-paniculata_contig14693.2800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
DCRDYGGLSRFSGEVETVKCFENNPLVRQRLTGEDGTGKVLVVDGGGSLR
RALMGDQLAAGAVQNKWRGIIINGAIRDSAAIAKLSIGCKALGTIPLKSE
KKVPGMSVIHVLLQ*
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mRNA from alignment at H-paniculata_contig14693:2720..3542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14693.2800.1 ID=mRNA_H-paniculata_contig14693.2800.1|Name=mRNA_H-paniculata_contig14693.2800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=823bp|location=Sequence derived from alignment at H-paniculata_contig14693:2720..3542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGCAGGGACTACGGTGGACTTTCGAGGTTCTCCGGAGAAGTTGAAAC CGTCAAATGCTTCGAGAATAACCCTTTGGTGCGCCAACGCCTGACGGGCG AAGACGGAACCGGAAAAGTGTTGGTGGTGGATGGTGGTGGTTCTCTGCGG AGGGCTCTCATGGGTGACCAGCTTGCGGCCGGGGCTGTTCAGAACAAGTG GAGGGTACATTTTACCATTAATCTGTGCAGCGTTTGTTGTGTCGTTTCGT TCTTTTTTGTTCATTTTCATATTCTCTGGTTCGTACTGCTTTTACACTAC AGCATGTTCTGAGGTGTGTTTCTTGCGTTGCGCCTCAAACCCCGAAGGCG TGCACATACAGACCATGTAGAGGCTCAGGAAAGCATCGGAAGACGCTCAG GGGGTCCAACCTTGCCGAACCGCGATCTTTGTGGCGGGCGATGATGTGCC CCTTTTCCTTGAATCGACTGATCTTTGTTTTGTTCTTCTGTTGGTCGTTT CTCAAATTCCCCCCCCCCCGACATTTCAACGGTTAGATTTTGCCAGTAAG TGTTATATATATATATATAAACTATTTTCGCTGGGTGCTTCTACGACACG ATAAAATCGATGGCGATACATACAACAATGAACACTACACGATATATTTC TTTTTCCCTATATGTATATTTCTTCTGTTTAGGGTATTATTATCAACGGT GCGATTCGAGACTCGGCGGCGATCGCTAAACTTTCGATTGGATGCAAAGC ACTGGGCACGATTCCACTCAAGAGCGAAAAAAAAGTCCCAGGTATGTCAG TGATTCATGTACTGCTGCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14693:2720..3542+

>mRNA_H-paniculata_contig14693.2800.1 ID=mRNA_H-paniculata_contig14693.2800.1|Name=mRNA_H-paniculata_contig14693.2800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig14693:2720..3542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGCAGGGACTACGGTGGACTTTCGAGGTTCTCCGGAGAAGTTGAAAC
CGTCAAATGCTTCGAGAATAACCCTTTGGTGCGCCAACGCCTGACGGGCG
AAGACGGAACCGGAAAAGTGTTGGTGGTGGATGGTGGTGGTTCTCTGCGG
AGGGCTCTCATGGGTGACCAGCTTGCGGCCGGGGCTGTTCAGAACAAGTG
GAGGGACTGCAGGGACTACGGTGGACTTTCGAGGTTCTCCGGAGAAGTTG
AAACCGTCAAATGCTTCGAGAATAACCCTTTGGTGCGCCAACGCCTGACG
GGCGAAGACGGAACCGGAAAAGTGTTGGTGGTGGATGGTGGTGGTTCTCT
GCGGAGGGCTCTCATGGGTGACCAGCTTGCGGCCGGGGCTGTTCAGAACA
AGTGGAGGGGTATTATTATCAACGGTGCGATTCGAGACTCGGCGGCGATC
GCTAAACTTTCGATTGGATGCAAAGCACTGGGCACGATTCCACTCAAGAG
CGAAAAAAAAGTCCCAGGTATGTCAGTGATTCATGTACTGCTGCAATGAG
GTATTATTATCAACGGTGCGATTCGAGACTCGGCGGCGATCGCTAAACTT
TCGATTGGATGCAAAGCACTGGGCACGATTCCACTCAAGAGCGAAAAAAA
AGTCCCAGGTATGTCAGTGATTCATGTACTGCTGCAATGA
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