mRNA_H-paniculata_contig1459.2749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1459.2749.1
Unique NamemRNA_H-paniculata_contig1459.2749.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.540e-38
Identity = 152/269 (56.51%), Postives = 165/269 (61.34%), Query Frame = 1
Query:  103 MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSIPGMAAVPAVAEPAAESSSAEASAHGNGVSGEPADAAPEVAAATEVDAEAATGDASDAAGNRQTGPITGTA-----------------AEAARLAKRIERFGRIAPATQDENAEKLAKRRAKFGLPEPVAGTDGTGQKRAMDPEEEAKRKKRMERFGIVDEKAEATARAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----QAAKKAQRIARFGEIAT 846
            MSEI VSKLKVS+LK ELA R L+VKGNKADLAQRLQAALD EEF    M   P V + A E+        GNG + EP  A P V A                                              AEA RLAKR+ERFGRIAP T+ E AEK+A RR KFGLPEP AG    G KR+++PEEEAKRKKRMERFGIVD+K EA  R EA  XXXXXXXXXXXXXXXXXXXXXXXXXXX      QA KKA+RIARFGE  T
Sbjct:    1 MSEINVSKLKVSELKTELASRSLDVKGNKADLAQRLQAALDEEEFGAISMP-TPTVGDAATEA--------GNGTAAEPP-AEPAVEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGK-QGTKRSLNPEEEAKRKKRMERFGIVDDKEEAAKRTEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLASEQAEKKAKRIARFGEDTT 258          
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.880e-38
Identity = 112/215 (52.09%), Postives = 124/215 (57.67%), Query Frame = 1
Query:  103 MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSIPGMAAVPAVAEPAAESSSAEASAHGNGVSGEPADAAPEVAAATEVDAEAATGDASDAAGNRQTGPITGTA---------------AEAARLAKRIERFGRIAPATQDENAEKLAKRRAKFGLPEPVAGTDGTGQKRAMDPEEEAKRKKRMERFGIVDEKAEATARAEA 702
            MSEI VSKLKVS+LKAELA R L+VKGNKADLAQRLQAALD EEF    M   P V + A E+        GNG + EPA+                                                   AEA RLAKR+ERFGRIAP T+ E AEK+A RR KFGLPEP AG    G KR+++PEEEAKRKKRMERFGIVDEK EA  RAEA
Sbjct:    1 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMP-TPTVGDAATEA--------GNGTAAEPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTEREVAEKMAMRREKFGLPEPAAGGK-QGTKRSLNPEEEAKRKKRMERFGIVDEKEEAAKRAEA 205          
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Match: A0A835Z395_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.990e-5
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1
Query:  103 MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSI 243
            MSE+   K+KV+DLKAELAKR+L+  G K DL QRLQAALD EEF +
Sbjct:    1 MSEVNPQKMKVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFGL 47          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQC6_ECTSI2.540e-3856.51SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KM35_9PHAE2.880e-3852.09SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z395_9STRA3.990e-565.96SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1459contigH-paniculata_contig1459:4451..10163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-10_005130.1
Exons6
Model size1101
Cds size999
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.5669637-UTR-H-paniculata_contig1459:4450..45521622929160.5669637-UTR-H-paniculata_contig1459:4450..4552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 4451..4552 +
1691480754.4718573-UTR-H-paniculata_contig1459:4450..45521691480754.4718573-UTR-H-paniculata_contig1459:4450..4552Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 4451..4552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.5815063-CDS-H-paniculata_contig1459:4552..45821622929160.5815063-CDS-H-paniculata_contig1459:4552..4582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 4553..4582 +
1691480754.4818294-CDS-H-paniculata_contig1459:4552..45821691480754.4818294-CDS-H-paniculata_contig1459:4552..4582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 4553..4582 +
1622929160.5988624-CDS-H-paniculata_contig1459:5852..60321622929160.5988624-CDS-H-paniculata_contig1459:5852..6032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 5853..6032 +
1691480754.4913275-CDS-H-paniculata_contig1459:5852..60321691480754.4913275-CDS-H-paniculata_contig1459:5852..6032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 5853..6032 +
1622929160.620468-CDS-H-paniculata_contig1459:7535..76041622929160.620468-CDS-H-paniculata_contig1459:7535..7604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 7536..7604 +
1691480754.5013945-CDS-H-paniculata_contig1459:7535..76041691480754.5013945-CDS-H-paniculata_contig1459:7535..7604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 7536..7604 +
1622929160.635446-CDS-H-paniculata_contig1459:8596..87881622929160.635446-CDS-H-paniculata_contig1459:8596..8788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 8597..8788 +
1691480754.5112069-CDS-H-paniculata_contig1459:8596..87881691480754.5112069-CDS-H-paniculata_contig1459:8596..8788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 8597..8788 +
1622929160.6503007-CDS-H-paniculata_contig1459:9241..93731622929160.6503007-CDS-H-paniculata_contig1459:9241..9373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 9242..9373 +
1691480754.520806-CDS-H-paniculata_contig1459:9241..93731691480754.520806-CDS-H-paniculata_contig1459:9241..9373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 9242..9373 +
1622929160.6655717-CDS-H-paniculata_contig1459:9767..101631622929160.6655717-CDS-H-paniculata_contig1459:9767..10163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 9768..10163 +
1691480754.5315876-CDS-H-paniculata_contig1459:9767..101631691480754.5315876-CDS-H-paniculata_contig1459:9767..10163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 9768..10163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1459.2749.1prot_H-paniculata_contig1459.2749.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1459 4553..10163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1459.2749.1

>prot_H-paniculata_contig1459.2749.1 ID=prot_H-paniculata_contig1459.2749.1|Name=mRNA_H-paniculata_contig1459.2749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=333bp
MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSIPGM
AAVPAVAEPAAESSSAEASAHGNGVSGEPADAAPEVAAATEVDAEAATGD
ASDAAGNRQTGPITGTAAEAARLAKRIERFGRIAPATQDENAEKLAKRRA
KFGLPEPVAGTDGTGQKRAMDPEEEAKRKKRMERFGIVDEKAEATARAEA
EAAKRVARQEKFGFVNPNAEKKALTEQLTAEQAAKKAQRIARFGEIATPR
TNTSAAPSSTVPKTKSSGGGGGGKSGSGGGGGRGGGRGGGQGGKGRGKKQ
VTGGQGRRGGGGGGGGGGGATAMLAQGLKASR*
back to top

mRNA from alignment at H-paniculata_contig1459:4451..10163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1459.2749.1 ID=mRNA_H-paniculata_contig1459.2749.1|Name=mRNA_H-paniculata_contig1459.2749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5713bp|location=Sequence derived from alignment at H-paniculata_contig1459:4451..10163+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGGGTAGGAGAGGAGAAGGAGCACGCGAGAGTGAGAGCGACGATATA TTTGTGCCAGCTGTGTACATCCCTGCTGGCGTCAGTACCATCGCTCTGAA AAATGAGTGAAATAATCGTGTCCAAGCTAAAGGTACGGTGGTGGGCGCCA AAACGATGAGAGGTTCTCTACTTTTAGCTCAAACTGCGGCGGATCTTGGG ATGGGTTTGGGGGTCGGGGCGAGGGGTGTGCCTTCTCCTGTACCTGCTTT GGTGTGCTTGTTTCATGGAAGATGGCGAACTTATGTTGTTGCCGTCGTGG CGTTTGTCGGGGGCGGCTAAATACTTGACAGTAAATGTCTGAATGGTGTT GGATTTCGATTGAGCCCCCTCAGACCTGAGTGTTTGTTCGTTCATCCGAC GGTGCCCCGCCGCCCATAAAAACGAGAGAGAGGACAACACGCGTGAACAG GCGCTATACAGACATGTGGGCATCCATCCTCTGAGTTTGGCAGAAGATGC CGGGAATCTATGTCTGTGTGACTGTAGCACATATTTAGCATGAAGTGGAG AGGACAAACCCAAATAATTTCTTTCTCAAGGGGATGCTTTCGTTTTGGTC AAACCTAGCCGCCAGTTGTCTCTTGTTTGGAAAACATGAAAACCAGTAAC TACCCTCTGTACCTCTTGTCTCTGCCCATGCTTTGGTTGCGAAACAGCCG CCCCAAACAGCCGGGTCGTTCATGTTCCACACCAACTTCTCGCGCCGATA GCTCGGCCAAGACCGAATAGAAACTGATAAAGAAGCCACCGTTGTCGGTG ATGAGAGCCAAACCCAGAGCACAACGCTCCCTGGCACAAACCACAACTTC GCCATCGCCGCTTTTGAACCACTTCGTAGATCATAGGCCCCCTTCAAGAA ATGAGCCAACAAGAATCCCAGGCCCAGCCTTTGGGATTTAAAAGAATTTT GGCATAAGAAAAAGGGTTAAATTGTTGCCCCTTCGTTATTCCCGTGTACT GAGCACTGCTCATTGTTCTCGCCAAAATGAAGTTGGAGCCACGGCCCAAA TAAGAGTGTCTTACATACATTGGAGTGTACTTGATACACACGCCATACAT GCGGCAGAAGCTCATCGCTCTCGTGCAAGCCAGATTCCCAGAGTTGTTTG AAAATAATGTGCAAGTGTGGCTTGCTCAACAGATCAGGGTGCAGGCACGA CATGATGCCTGAAGGTTAAGGATATTTGTACATGTAAAATCGCGCAAACA ATTGATATGCGCGCTCCCTCCCGCCCTTCCACCCCTCGGCGTTCAACCCT GCGAACCACAGCCGTATCACATATCCTCTTTTCGGGTCATCCCAAGTTAT CCATATTGAATCCCGCCCGATTAACGAGCAAACCGTTAACCCACAACCAC AGGTATCGGACCTCAAGGCAGAGCTCGCCAAGAGGGACCTCGAGGTGAAG GGAAACAAGGCTGACCTAGCACAGCGACTGCAGGCCGCGCTGGATGCCGA GGAGTTCAGCATACCCGGCATGGCAGCTGTGCCTGCTGTAGCGGAGCCCG CCGCCGAATCTTCTTCAGCAGAGGCCTCTGCGGTACGTATGTTTGGGATG GTCGTCAATCTATGCCTCTCACACTTTTGTGGGCGATTTCGCTGCAGTAT ATATATACTTGCTCTGTGCCATAACTGTGTTCAATTATTTTCGTAGAAGA CATTATTGATATCGATGTTTTTCCTTAATTAGAAATCTACATGTTTTGGG GATTTAATTCTCAAAGTTTTGGGCGAAACGGTAGCTTTTGAACACCAAAC TATACGCCATGATAAAAAACGCTCGGCCGCCTAGCGAATATATTTTGGCA TTTTGCCTTTTTTCGAAAAAAATAAAATTAAAGAAAAACCCACAAAATTC TCCTCTATCTCGTCTTTCGATAGATCCCATCCACGCCCAGTGAATGTACA AAGATCGGGACGTACCCCGTATGGGGTGTCAAAAGTAAAATGTTGCAAGA GCTTGTAGTTAATCTTTTTTCGTAGGATGAAAAAGGGAAAAATATGACTT TTTCTCAGCCGAGGGTCTTTTCGCGGCGTGTATTTTCCTGTTTCGAGGCA ACCGTTTTTCCCGAAAATTAGGTTTCGACCCCAAAATGTGTAGGATTCTT ACAGAACAGGAAAAGTGGAGATTGTTCATGTTTTGTACGAAATTAATCGA CCAAGCTTATGGCATAGAGGATGCATATAACTGCTCCTCTTCATGTCGGA TGGATCACGAGACGAGGGTCGCGAAGTTAGAATATCAGCTTCCACTAAAG CTCTTAAGCTAAGGCAGGTGTTGTTGCTCATATCAAGATGGGGGCAAACC CGTTGCTTCCTGGCTCTGTTCTGTTCGTGTATCCATTGCTGGGTCGTGGT CCGTTCTGCGCCTTTTCACCTCTTCATTGCTGCTGTCTCGAGAAAACCCT TAAATAACGTTCTCTTTTGTTTGCAGAGTCCCCCTTACCATTGTTTTCTG TGCGTCCTTCGCGTACAGAGCTCAGCTTCATCATGTAGTCGCTCAAATTG CTTTTAAATGCTTTGTGATGTGCTAAGCAAACCTGCGTTCGCATCCCCGT CCCTCATGTTGCCAAACTCGCGTCAACATCGGCGGTTCGGGCGGTGTTTG CCTCTGTGAATTTTTTTTTCGCAATTTGACATCCCCTTGTTGGGGGTATT ACGTTCAACATAGGGGCGACTTAGACCCAAGGCTTAACGTGATGAATGAT CTTATTGGGCCACAGTGGCGATGATGACGTTTTCAATTTTGTTGAGAGGT TATCCGCGTTTCTTGTGATGACCACCATAATGTGTCTAACAGAGCCAAGT GTCCTTTTTTTTTCCAGATTTACTTCGATGTCCTGTCGGGGGGTACTTCG CGTTTTTTTCATCCTTGACGGAGTGCGAGGAGTCCGATTTTGACGGAATC GTGGTTCTACCGGGAATGTGACCATTGCTATACTTTATTCTCGTACATTA CACGTATGCTTCCTTTTCTCTGTCCTCCCCCACATGACCTCTCGAATTTA CGCCTTTGTGCTGCTGTATATTGCTCGCAAACCAGCATGGTAATGGAGTT TCGGGGGAGCCCGCAGATGCTGCGCCTGAGGTTGCTGCTGCTACAGAAGT CGACGTGAGAAATAAGTATCTGGCTTAAGTGCGTCGGCAGGTCCGCTGCA GAACTGTGTGGCTGTTAACACTGCTTCTTATGGTAATTCCTTTTTCGCGG GGCTTGACTATGATACCGTTAGTTGATTGGAAGCTGCTGGTGTGTGTGAT GTTTTTTGTGTTTGTATGTAATAGTTGCCGCTATTGGGTTGTGTCCGCTG TAGCTATGTCGTGCAGACTGTATGTTTTTATTTTCGGGGTGTTCGAGAGG TTTCATGTAATCTATTTTGTACAGTCACGCTTCAGCTTTGCGTTCAGCAG CAACAATCGTTTTTTCTTGGTGAGTGTCTTCAACCTGGGTTTTTTACCAC ACTGGAAGCGTACATTCGCTGTCGGGCGCTGGGAGTATGATTGGGTGTTT TTCGACAGCGCTTCTCGCGCGTGCAGAACTTTCAAGACACCGTCGGCACC ACCTGTATAGCTGTCTCTAACTAGCAGGAAAACGCTTTTTGGGTGAACTC TGCTTAAAGAATAACATGTATTTGCTCCACCCTGCATCTTCGAACCTAGA TGCAAGAACCAAAGCGTGAGCGTAGCCTCGGTGGGAGCCTTTCTTGCGTG GGAGCATCGTGTTTCCAATTTCAATGAGACTAATTTTTATGCTGACGATT CCCTACTGTGTTGAAACTACCGTCGTCCCCTACTTTCGTCTCTCTTCCCT TTCCTTCCCTTTTATCTAGTTTTGGTGAAAGTGTACACAACTGAGATATA AGGTCAGCTGCAAAATATCAACAGCGGTATTGCATGAGCGTGATGGATCT CACAAAACTCCTCTTTGCTCAATTTGTGGATAAGTAATACAGCAACTCAA GATGCTGACGAGCACACCTCCATTTTGGTTCACGGTCAATGTCGTGTTTT CTACGTGACATAATTGATCTCTTGCTACATTTGACATTTTTTAATTCCAT TAACCCTCCCCACCCCCCCCTCTTCCCTTTCGCGCGCGCTGCCCAGGCGG AGGCGGCAACTGGCGACGCGAGCGATGCTGCGGGAAATCGGCAGACCGGA CCTATTACGGGTACCGCGGCAGAGGCTGCTAGACTGGCGAAGCGGATCGA GAGATTCGGACGCATTGCGCCGGCGACCCAGGACGAAAACGCGGAGAAAC TAGCAAAGCGCAGGGCTAAGTTCGGTCTACCGGAGCCGGTAAGCGAGTTT GATGACGTCTAGTCGTCCTAGCAATACCCTCCACAACAAGATTTGCTGTA GAGGACATTCTGGTAGTGTAGGCTTGGGTAGGTAGATGAAGGTATTTGCG TCGGGGTTCGTGCTTTGCCTCGACGTCATTGGGCTCCACTTGGGTTTATC GTCGGGGCCTCTACCTGGCATGCAAGTGTGGTTGGGTTTAAGGTGTCCGA AGAAGCTAAGCTCTTTTCTCAAGAAGGAGCAAACTTGAACGTTCTTTCGT AGGGTAGTGATTTCGCGGTTTTATCTGATTCATCGCGTTCCCGTTGCACT GCTCAACACATGGAGCGTGTAAAATGATGCTATCATACCACTACAAGTCG CTACGAAATTTAGAAAATACCGCCGTGGCTGACAGACGCCCTGGCCATGG TAAAATATTTGGTGCTTCTGTTGTTGCCCCCAACATTGCAGGTCGCCGGT ACCGATGGCACAGGCCAGAAAAGAGCGATGGACCCAGAAGAGGAGGCCAA GAGGAAAAAGCGCATGGAGCGGTTTGGTATTGTGGACGAAAAGGCAGAAG CGACTGCAAGGGCAGAAGCGGAGGTACGCCAGCGTCCGAGTGCTCCGTCG GGGGTTGCTGTGTTGCCGTGTGCGCAGATTTGAGAAAAGTGGTGGAGCAG TCAACCTCCCTTCGTTTCTTTGCGTGATGAGTCGTCGTAGTGCTTCCCCG CGTAACGTCCGTACAAATGGGTGGTTTTTCCCAACTCACAAACGGGTAGC CTGTGTGTCCACGGTCCAAAAGTGTTATCTTGTAATAAGTAGCGGCTGCC ACACCATGTCTGGAAAATAGACTGCATCTAACGCGATGTTTTGAAGAACA AAAGACTCATCGCGTCTCGTCGTTCGATGGCAACTGGCGGAATATGCGCT AACCAATTCCTCTGCACACAACCCCACCGCCCAAAAAAAATAAATTAATA AACGTTTGAAAAAATAGGCTGCCAAGAGGGTCGCTCGCCAGGAGAAATTC GGATTCGTGAATCCGAACGCCGAGAAGAAAGCGCTCACGGAACAACTGAC TGCGGAACAGGCCGCCAAGAAGGCACAGAGAATTGCGCGCTTCGGCGAGA TAGCTACCCCCAGAACCAATACCTCTGCTGCTCCGTCCTCGACTGTGCCG AAGACGAAGTCTTCGGGAGGAGGGGGGGGGGGCAAGAGTGGTAGTGGCGG AGGTGGTGGCCGCGGGGGCGGGCGCGGGGGTGGGCAAGGCGGCAAGGGGA GGGGTAAAAAGCAAGTGACTGGGGGGCAGGGTAGGAGGGGGGGAGGAGGA GGAGGTGGCGGCGGCGGCGGTGCGACTGCGATGCTTGCACAAGGGTTGAA GGCTTCGCGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1459:4451..10163+

>mRNA_H-paniculata_contig1459.2749.1 ID=mRNA_H-paniculata_contig1459.2749.1|Name=mRNA_H-paniculata_contig1459.2749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1998bp|location=Sequence derived from alignment at H-paniculata_contig1459:4451..10163+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGAAATAATCGTGTCCAAGCTAAAGATGAGTGAAATAATCGTGTC
CAAGCTAAAGGTATCGGACCTCAAGGCAGAGCTCGCCAAGAGGGACCTCG
AGGTGAAGGGAAACAAGGCTGACCTAGCACAGCGACTGCAGGCCGCGCTG
GATGCCGAGGAGTTCAGCATACCCGGCATGGCAGCTGTGCCTGCTGTAGC
GGAGCCCGCCGCCGAATCTTCTTCAGCAGAGGCCTCTGCGGTATCGGACC
TCAAGGCAGAGCTCGCCAAGAGGGACCTCGAGGTGAAGGGAAACAAGGCT
GACCTAGCACAGCGACTGCAGGCCGCGCTGGATGCCGAGGAGTTCAGCAT
ACCCGGCATGGCAGCTGTGCCTGCTGTAGCGGAGCCCGCCGCCGAATCTT
CTTCAGCAGAGGCCTCTGCGCATGGTAATGGAGTTTCGGGGGAGCCCGCA
GATGCTGCGCCTGAGGTTGCTGCTGCTACAGAAGTCGACCATGGTAATGG
AGTTTCGGGGGAGCCCGCAGATGCTGCGCCTGAGGTTGCTGCTGCTACAG
AAGTCGACGCGGAGGCGGCAACTGGCGACGCGAGCGATGCTGCGGGAAAT
CGGCAGACCGGACCTATTACGGGTACCGCGGCAGAGGCTGCTAGACTGGC
GAAGCGGATCGAGAGATTCGGACGCATTGCGCCGGCGACCCAGGACGAAA
ACGCGGAGAAACTAGCAAAGCGCAGGGCTAAGTTCGGTCTACCGGAGCCG
GCGGAGGCGGCAACTGGCGACGCGAGCGATGCTGCGGGAAATCGGCAGAC
CGGACCTATTACGGGTACCGCGGCAGAGGCTGCTAGACTGGCGAAGCGGA
TCGAGAGATTCGGACGCATTGCGCCGGCGACCCAGGACGAAAACGCGGAG
AAACTAGCAAAGCGCAGGGCTAAGTTCGGTCTACCGGAGCCGGTCGCCGG
TACCGATGGCACAGGCCAGAAAAGAGCGATGGACCCAGAAGAGGAGGCCA
AGAGGAAAAAGCGCATGGAGCGGTTTGGTATTGTGGACGAAAAGGCAGAA
GCGACTGCAAGGGCAGAAGCGGAGGTCGCCGGTACCGATGGCACAGGCCA
GAAAAGAGCGATGGACCCAGAAGAGGAGGCCAAGAGGAAAAAGCGCATGG
AGCGGTTTGGTATTGTGGACGAAAAGGCAGAAGCGACTGCAAGGGCAGAA
GCGGAGGCTGCCAAGAGGGTCGCTCGCCAGGAGAAATTCGGATTCGTGAA
TCCGAACGCCGAGAAGAAAGCGCTCACGGAACAACTGACTGCGGAACAGG
CCGCCAAGAAGGCACAGAGAATTGCGCGCTTCGGCGAGATAGCTACCCCC
AGAACCAATACCTCTGCTGCTCCGTCCTCGACTGTGCCGAAGACGAAGTC
TTCGGGAGGAGGGGGGGGGGGCAAGAGTGGTAGTGGCGGAGGTGGTGGCC
GCGGGGGCGGGCGCGGGGGTGGGCAAGGCGGCAAGGGGAGGGGTAAAAAG
CAAGTGACTGGGGGGCAGGGTAGGAGGGGGGGAGGAGGAGGAGGTGGCGG
CGGCGGCGGTGCGACTGCGATGCTTGCACAAGGGTTGAAGGCTTCGCGGT
GAGCTGCCAAGAGGGTCGCTCGCCAGGAGAAATTCGGATTCGTGAATCCG
AACGCCGAGAAGAAAGCGCTCACGGAACAACTGACTGCGGAACAGGCCGC
CAAGAAGGCACAGAGAATTGCGCGCTTCGGCGAGATAGCTACCCCCAGAA
CCAATACCTCTGCTGCTCCGTCCTCGACTGTGCCGAAGACGAAGTCTTCG
GGAGGAGGGGGGGGGGGCAAGAGTGGTAGTGGCGGAGGTGGTGGCCGCGG
GGGCGGGCGCGGGGGTGGGCAAGGCGGCAAGGGGAGGGGTAAAAAGCAAG
TGACTGGGGGGCAGGGTAGGAGGGGGGGAGGAGGAGGAGGTGGCGGCGGC
GGCGGTGCGACTGCGATGCTTGCACAAGGGTTGAAGGCTTCGCGGTGA
back to top