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Homology
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI) HSP 1 Score: 149 bits (376), Expect = 2.540e-38 Identity = 152/269 (56.51%), Postives = 165/269 (61.34%), Query Frame = 1
Query: 103 MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSIPGMAAVPAVAEPAAESSSAEASAHGNGVSGEPADAAPEVAAATEVDAEAATGDASDAAGNRQTGPITGTA-----------------AEAARLAKRIERFGRIAPATQDENAEKLAKRRAKFGLPEPVAGTDGTGQKRAMDPEEEAKRKKRMERFGIVDEKAEATARAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----QAAKKAQRIARFGEIAT 846
MSEI VSKLKVS+LK ELA R L+VKGNKADLAQRLQAALD EEF M P V + A E+ GNG + EP A P V A AEA RLAKR+ERFGRIAP T+ E AEK+A RR KFGLPEP AG G KR+++PEEEAKRKKRMERFGIVD+K EA R EA XXXXXXXXXXXXXXXXXXXXXXXXXXX QA KKA+RIARFGE T
Sbjct: 1 MSEINVSKLKVSELKTELASRSLDVKGNKADLAQRLQAALDEEEFGAISMP-TPTVGDAATEA--------GNGTAAEPP-AEPAVEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGK-QGTKRSLNPEEEAKRKKRMERFGIVDDKEEAAKRTEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLASEQAEKKAKRIARFGEDTT 258
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.880e-38 Identity = 112/215 (52.09%), Postives = 124/215 (57.67%), Query Frame = 1
Query: 103 MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSIPGMAAVPAVAEPAAESSSAEASAHGNGVSGEPADAAPEVAAATEVDAEAATGDASDAAGNRQTGPITGTA---------------AEAARLAKRIERFGRIAPATQDENAEKLAKRRAKFGLPEPVAGTDGTGQKRAMDPEEEAKRKKRMERFGIVDEKAEATARAEA 702
MSEI VSKLKVS+LKAELA R L+VKGNKADLAQRLQAALD EEF M P V + A E+ GNG + EPA+ AEA RLAKR+ERFGRIAP T+ E AEK+A RR KFGLPEP AG G KR+++PEEEAKRKKRMERFGIVDEK EA RAEA
Sbjct: 1 MSEINVSKLKVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMP-TPTVGDAATEA--------GNGTAAEPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTEREVAEKMAMRREKFGLPEPAAGGK-QGTKRSLNPEEEAKRKKRMERFGIVDEKEEAAKRAEA 205
BLAST of mRNA_H-paniculata_contig1459.2749.1 vs. uniprot
Match: A0A835Z395_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.990e-5 Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 103 MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSI 243
MSE+ K+KV+DLKAELAKR+L+ G K DL QRLQAALD EEF +
Sbjct: 1 MSEVNPQKMKVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFGL 47
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | SAP domain |
Ec32 ortholog | Ec-10_005130.1 |
Exons | 6 |
Model size | 1101 |
Cds size | 999 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1459.2749.1 >prot_H-paniculata_contig1459.2749.1 ID=prot_H-paniculata_contig1459.2749.1|Name=mRNA_H-paniculata_contig1459.2749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=333bp
MSEIIVSKLKVSDLKAELAKRDLEVKGNKADLAQRLQAALDAEEFSIPGM AAVPAVAEPAAESSSAEASAHGNGVSGEPADAAPEVAAATEVDAEAATGD ASDAAGNRQTGPITGTAAEAARLAKRIERFGRIAPATQDENAEKLAKRRA KFGLPEPVAGTDGTGQKRAMDPEEEAKRKKRMERFGIVDEKAEATARAEA EAAKRVARQEKFGFVNPNAEKKALTEQLTAEQAAKKAQRIARFGEIATPR TNTSAAPSSTVPKTKSSGGGGGGKSGSGGGGGRGGGRGGGQGGKGRGKKQ VTGGQGRRGGGGGGGGGGGATAMLAQGLKASR* back to topmRNA from alignment at H-paniculata_contig1459:4451..10163+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1459.2749.1 ID=mRNA_H-paniculata_contig1459.2749.1|Name=mRNA_H-paniculata_contig1459.2749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5713bp|location=Sequence derived from alignment at H-paniculata_contig1459:4451..10163+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GCAGGGGTAGGAGAGGAGAAGGAGCACGCGAGAGTGAGAGCGACGATATA
TTTGTGCCAGCTGTGTACATCCCTGCTGGCGTCAGTACCATCGCTCTGAA
AAATGAGTGAAATAATCGTGTCCAAGCTAAAGGTACGGTGGTGGGCGCCA
AAACGATGAGAGGTTCTCTACTTTTAGCTCAAACTGCGGCGGATCTTGGG
ATGGGTTTGGGGGTCGGGGCGAGGGGTGTGCCTTCTCCTGTACCTGCTTT
GGTGTGCTTGTTTCATGGAAGATGGCGAACTTATGTTGTTGCCGTCGTGG
CGTTTGTCGGGGGCGGCTAAATACTTGACAGTAAATGTCTGAATGGTGTT
GGATTTCGATTGAGCCCCCTCAGACCTGAGTGTTTGTTCGTTCATCCGAC
GGTGCCCCGCCGCCCATAAAAACGAGAGAGAGGACAACACGCGTGAACAG
GCGCTATACAGACATGTGGGCATCCATCCTCTGAGTTTGGCAGAAGATGC
CGGGAATCTATGTCTGTGTGACTGTAGCACATATTTAGCATGAAGTGGAG
AGGACAAACCCAAATAATTTCTTTCTCAAGGGGATGCTTTCGTTTTGGTC
AAACCTAGCCGCCAGTTGTCTCTTGTTTGGAAAACATGAAAACCAGTAAC
TACCCTCTGTACCTCTTGTCTCTGCCCATGCTTTGGTTGCGAAACAGCCG
CCCCAAACAGCCGGGTCGTTCATGTTCCACACCAACTTCTCGCGCCGATA
GCTCGGCCAAGACCGAATAGAAACTGATAAAGAAGCCACCGTTGTCGGTG
ATGAGAGCCAAACCCAGAGCACAACGCTCCCTGGCACAAACCACAACTTC
GCCATCGCCGCTTTTGAACCACTTCGTAGATCATAGGCCCCCTTCAAGAA
ATGAGCCAACAAGAATCCCAGGCCCAGCCTTTGGGATTTAAAAGAATTTT
GGCATAAGAAAAAGGGTTAAATTGTTGCCCCTTCGTTATTCCCGTGTACT
GAGCACTGCTCATTGTTCTCGCCAAAATGAAGTTGGAGCCACGGCCCAAA
TAAGAGTGTCTTACATACATTGGAGTGTACTTGATACACACGCCATACAT
GCGGCAGAAGCTCATCGCTCTCGTGCAAGCCAGATTCCCAGAGTTGTTTG
AAAATAATGTGCAAGTGTGGCTTGCTCAACAGATCAGGGTGCAGGCACGA
CATGATGCCTGAAGGTTAAGGATATTTGTACATGTAAAATCGCGCAAACA
ATTGATATGCGCGCTCCCTCCCGCCCTTCCACCCCTCGGCGTTCAACCCT
GCGAACCACAGCCGTATCACATATCCTCTTTTCGGGTCATCCCAAGTTAT
CCATATTGAATCCCGCCCGATTAACGAGCAAACCGTTAACCCACAACCAC
AGGTATCGGACCTCAAGGCAGAGCTCGCCAAGAGGGACCTCGAGGTGAAG
GGAAACAAGGCTGACCTAGCACAGCGACTGCAGGCCGCGCTGGATGCCGA
GGAGTTCAGCATACCCGGCATGGCAGCTGTGCCTGCTGTAGCGGAGCCCG
CCGCCGAATCTTCTTCAGCAGAGGCCTCTGCGGTACGTATGTTTGGGATG
GTCGTCAATCTATGCCTCTCACACTTTTGTGGGCGATTTCGCTGCAGTAT
ATATATACTTGCTCTGTGCCATAACTGTGTTCAATTATTTTCGTAGAAGA
CATTATTGATATCGATGTTTTTCCTTAATTAGAAATCTACATGTTTTGGG
GATTTAATTCTCAAAGTTTTGGGCGAAACGGTAGCTTTTGAACACCAAAC
TATACGCCATGATAAAAAACGCTCGGCCGCCTAGCGAATATATTTTGGCA
TTTTGCCTTTTTTCGAAAAAAATAAAATTAAAGAAAAACCCACAAAATTC
TCCTCTATCTCGTCTTTCGATAGATCCCATCCACGCCCAGTGAATGTACA
AAGATCGGGACGTACCCCGTATGGGGTGTCAAAAGTAAAATGTTGCAAGA
GCTTGTAGTTAATCTTTTTTCGTAGGATGAAAAAGGGAAAAATATGACTT
TTTCTCAGCCGAGGGTCTTTTCGCGGCGTGTATTTTCCTGTTTCGAGGCA
ACCGTTTTTCCCGAAAATTAGGTTTCGACCCCAAAATGTGTAGGATTCTT
ACAGAACAGGAAAAGTGGAGATTGTTCATGTTTTGTACGAAATTAATCGA
CCAAGCTTATGGCATAGAGGATGCATATAACTGCTCCTCTTCATGTCGGA
TGGATCACGAGACGAGGGTCGCGAAGTTAGAATATCAGCTTCCACTAAAG
CTCTTAAGCTAAGGCAGGTGTTGTTGCTCATATCAAGATGGGGGCAAACC
CGTTGCTTCCTGGCTCTGTTCTGTTCGTGTATCCATTGCTGGGTCGTGGT
CCGTTCTGCGCCTTTTCACCTCTTCATTGCTGCTGTCTCGAGAAAACCCT
TAAATAACGTTCTCTTTTGTTTGCAGAGTCCCCCTTACCATTGTTTTCTG
TGCGTCCTTCGCGTACAGAGCTCAGCTTCATCATGTAGTCGCTCAAATTG
CTTTTAAATGCTTTGTGATGTGCTAAGCAAACCTGCGTTCGCATCCCCGT
CCCTCATGTTGCCAAACTCGCGTCAACATCGGCGGTTCGGGCGGTGTTTG
CCTCTGTGAATTTTTTTTTCGCAATTTGACATCCCCTTGTTGGGGGTATT
ACGTTCAACATAGGGGCGACTTAGACCCAAGGCTTAACGTGATGAATGAT
CTTATTGGGCCACAGTGGCGATGATGACGTTTTCAATTTTGTTGAGAGGT
TATCCGCGTTTCTTGTGATGACCACCATAATGTGTCTAACAGAGCCAAGT
GTCCTTTTTTTTTCCAGATTTACTTCGATGTCCTGTCGGGGGGTACTTCG
CGTTTTTTTCATCCTTGACGGAGTGCGAGGAGTCCGATTTTGACGGAATC
GTGGTTCTACCGGGAATGTGACCATTGCTATACTTTATTCTCGTACATTA
CACGTATGCTTCCTTTTCTCTGTCCTCCCCCACATGACCTCTCGAATTTA
CGCCTTTGTGCTGCTGTATATTGCTCGCAAACCAGCATGGTAATGGAGTT
TCGGGGGAGCCCGCAGATGCTGCGCCTGAGGTTGCTGCTGCTACAGAAGT
CGACGTGAGAAATAAGTATCTGGCTTAAGTGCGTCGGCAGGTCCGCTGCA
GAACTGTGTGGCTGTTAACACTGCTTCTTATGGTAATTCCTTTTTCGCGG
GGCTTGACTATGATACCGTTAGTTGATTGGAAGCTGCTGGTGTGTGTGAT
GTTTTTTGTGTTTGTATGTAATAGTTGCCGCTATTGGGTTGTGTCCGCTG
TAGCTATGTCGTGCAGACTGTATGTTTTTATTTTCGGGGTGTTCGAGAGG
TTTCATGTAATCTATTTTGTACAGTCACGCTTCAGCTTTGCGTTCAGCAG
CAACAATCGTTTTTTCTTGGTGAGTGTCTTCAACCTGGGTTTTTTACCAC
ACTGGAAGCGTACATTCGCTGTCGGGCGCTGGGAGTATGATTGGGTGTTT
TTCGACAGCGCTTCTCGCGCGTGCAGAACTTTCAAGACACCGTCGGCACC
ACCTGTATAGCTGTCTCTAACTAGCAGGAAAACGCTTTTTGGGTGAACTC
TGCTTAAAGAATAACATGTATTTGCTCCACCCTGCATCTTCGAACCTAGA
TGCAAGAACCAAAGCGTGAGCGTAGCCTCGGTGGGAGCCTTTCTTGCGTG
GGAGCATCGTGTTTCCAATTTCAATGAGACTAATTTTTATGCTGACGATT
CCCTACTGTGTTGAAACTACCGTCGTCCCCTACTTTCGTCTCTCTTCCCT
TTCCTTCCCTTTTATCTAGTTTTGGTGAAAGTGTACACAACTGAGATATA
AGGTCAGCTGCAAAATATCAACAGCGGTATTGCATGAGCGTGATGGATCT
CACAAAACTCCTCTTTGCTCAATTTGTGGATAAGTAATACAGCAACTCAA
GATGCTGACGAGCACACCTCCATTTTGGTTCACGGTCAATGTCGTGTTTT
CTACGTGACATAATTGATCTCTTGCTACATTTGACATTTTTTAATTCCAT
TAACCCTCCCCACCCCCCCCTCTTCCCTTTCGCGCGCGCTGCCCAGGCGG
AGGCGGCAACTGGCGACGCGAGCGATGCTGCGGGAAATCGGCAGACCGGA
CCTATTACGGGTACCGCGGCAGAGGCTGCTAGACTGGCGAAGCGGATCGA
GAGATTCGGACGCATTGCGCCGGCGACCCAGGACGAAAACGCGGAGAAAC
TAGCAAAGCGCAGGGCTAAGTTCGGTCTACCGGAGCCGGTAAGCGAGTTT
GATGACGTCTAGTCGTCCTAGCAATACCCTCCACAACAAGATTTGCTGTA
GAGGACATTCTGGTAGTGTAGGCTTGGGTAGGTAGATGAAGGTATTTGCG
TCGGGGTTCGTGCTTTGCCTCGACGTCATTGGGCTCCACTTGGGTTTATC
GTCGGGGCCTCTACCTGGCATGCAAGTGTGGTTGGGTTTAAGGTGTCCGA
AGAAGCTAAGCTCTTTTCTCAAGAAGGAGCAAACTTGAACGTTCTTTCGT
AGGGTAGTGATTTCGCGGTTTTATCTGATTCATCGCGTTCCCGTTGCACT
GCTCAACACATGGAGCGTGTAAAATGATGCTATCATACCACTACAAGTCG
CTACGAAATTTAGAAAATACCGCCGTGGCTGACAGACGCCCTGGCCATGG
TAAAATATTTGGTGCTTCTGTTGTTGCCCCCAACATTGCAGGTCGCCGGT
ACCGATGGCACAGGCCAGAAAAGAGCGATGGACCCAGAAGAGGAGGCCAA
GAGGAAAAAGCGCATGGAGCGGTTTGGTATTGTGGACGAAAAGGCAGAAG
CGACTGCAAGGGCAGAAGCGGAGGTACGCCAGCGTCCGAGTGCTCCGTCG
GGGGTTGCTGTGTTGCCGTGTGCGCAGATTTGAGAAAAGTGGTGGAGCAG
TCAACCTCCCTTCGTTTCTTTGCGTGATGAGTCGTCGTAGTGCTTCCCCG
CGTAACGTCCGTACAAATGGGTGGTTTTTCCCAACTCACAAACGGGTAGC
CTGTGTGTCCACGGTCCAAAAGTGTTATCTTGTAATAAGTAGCGGCTGCC
ACACCATGTCTGGAAAATAGACTGCATCTAACGCGATGTTTTGAAGAACA
AAAGACTCATCGCGTCTCGTCGTTCGATGGCAACTGGCGGAATATGCGCT
AACCAATTCCTCTGCACACAACCCCACCGCCCAAAAAAAATAAATTAATA
AACGTTTGAAAAAATAGGCTGCCAAGAGGGTCGCTCGCCAGGAGAAATTC
GGATTCGTGAATCCGAACGCCGAGAAGAAAGCGCTCACGGAACAACTGAC
TGCGGAACAGGCCGCCAAGAAGGCACAGAGAATTGCGCGCTTCGGCGAGA
TAGCTACCCCCAGAACCAATACCTCTGCTGCTCCGTCCTCGACTGTGCCG
AAGACGAAGTCTTCGGGAGGAGGGGGGGGGGGCAAGAGTGGTAGTGGCGG
AGGTGGTGGCCGCGGGGGCGGGCGCGGGGGTGGGCAAGGCGGCAAGGGGA
GGGGTAAAAAGCAAGTGACTGGGGGGCAGGGTAGGAGGGGGGGAGGAGGA
GGAGGTGGCGGCGGCGGCGGTGCGACTGCGATGCTTGCACAAGGGTTGAA
GGCTTCGCGGTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1459:4451..10163+ >mRNA_H-paniculata_contig1459.2749.1 ID=mRNA_H-paniculata_contig1459.2749.1|Name=mRNA_H-paniculata_contig1459.2749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1998bp|location=Sequence derived from alignment at H-paniculata_contig1459:4451..10163+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGTGAAATAATCGTGTCCAAGCTAAAGATGAGTGAAATAATCGTGTC CAAGCTAAAGGTATCGGACCTCAAGGCAGAGCTCGCCAAGAGGGACCTCG AGGTGAAGGGAAACAAGGCTGACCTAGCACAGCGACTGCAGGCCGCGCTG GATGCCGAGGAGTTCAGCATACCCGGCATGGCAGCTGTGCCTGCTGTAGC GGAGCCCGCCGCCGAATCTTCTTCAGCAGAGGCCTCTGCGGTATCGGACC TCAAGGCAGAGCTCGCCAAGAGGGACCTCGAGGTGAAGGGAAACAAGGCT GACCTAGCACAGCGACTGCAGGCCGCGCTGGATGCCGAGGAGTTCAGCAT ACCCGGCATGGCAGCTGTGCCTGCTGTAGCGGAGCCCGCCGCCGAATCTT CTTCAGCAGAGGCCTCTGCGCATGGTAATGGAGTTTCGGGGGAGCCCGCA GATGCTGCGCCTGAGGTTGCTGCTGCTACAGAAGTCGACCATGGTAATGG AGTTTCGGGGGAGCCCGCAGATGCTGCGCCTGAGGTTGCTGCTGCTACAG AAGTCGACGCGGAGGCGGCAACTGGCGACGCGAGCGATGCTGCGGGAAAT CGGCAGACCGGACCTATTACGGGTACCGCGGCAGAGGCTGCTAGACTGGC GAAGCGGATCGAGAGATTCGGACGCATTGCGCCGGCGACCCAGGACGAAA ACGCGGAGAAACTAGCAAAGCGCAGGGCTAAGTTCGGTCTACCGGAGCCG GCGGAGGCGGCAACTGGCGACGCGAGCGATGCTGCGGGAAATCGGCAGAC CGGACCTATTACGGGTACCGCGGCAGAGGCTGCTAGACTGGCGAAGCGGA TCGAGAGATTCGGACGCATTGCGCCGGCGACCCAGGACGAAAACGCGGAG AAACTAGCAAAGCGCAGGGCTAAGTTCGGTCTACCGGAGCCGGTCGCCGG TACCGATGGCACAGGCCAGAAAAGAGCGATGGACCCAGAAGAGGAGGCCA AGAGGAAAAAGCGCATGGAGCGGTTTGGTATTGTGGACGAAAAGGCAGAA GCGACTGCAAGGGCAGAAGCGGAGGTCGCCGGTACCGATGGCACAGGCCA GAAAAGAGCGATGGACCCAGAAGAGGAGGCCAAGAGGAAAAAGCGCATGG AGCGGTTTGGTATTGTGGACGAAAAGGCAGAAGCGACTGCAAGGGCAGAA GCGGAGGCTGCCAAGAGGGTCGCTCGCCAGGAGAAATTCGGATTCGTGAA TCCGAACGCCGAGAAGAAAGCGCTCACGGAACAACTGACTGCGGAACAGG CCGCCAAGAAGGCACAGAGAATTGCGCGCTTCGGCGAGATAGCTACCCCC AGAACCAATACCTCTGCTGCTCCGTCCTCGACTGTGCCGAAGACGAAGTC TTCGGGAGGAGGGGGGGGGGGCAAGAGTGGTAGTGGCGGAGGTGGTGGCC GCGGGGGCGGGCGCGGGGGTGGGCAAGGCGGCAAGGGGAGGGGTAAAAAG CAAGTGACTGGGGGGCAGGGTAGGAGGGGGGGAGGAGGAGGAGGTGGCGG CGGCGGCGGTGCGACTGCGATGCTTGCACAAGGGTTGAAGGCTTCGCGGT GAGCTGCCAAGAGGGTCGCTCGCCAGGAGAAATTCGGATTCGTGAATCCG AACGCCGAGAAGAAAGCGCTCACGGAACAACTGACTGCGGAACAGGCCGC CAAGAAGGCACAGAGAATTGCGCGCTTCGGCGAGATAGCTACCCCCAGAA CCAATACCTCTGCTGCTCCGTCCTCGACTGTGCCGAAGACGAAGTCTTCG GGAGGAGGGGGGGGGGGCAAGAGTGGTAGTGGCGGAGGTGGTGGCCGCGG GGGCGGGCGCGGGGGTGGGCAAGGCGGCAAGGGGAGGGGTAAAAAGCAAG TGACTGGGGGGCAGGGTAGGAGGGGGGGAGGAGGAGGAGGTGGCGGCGGC GGCGGTGCGACTGCGATGCTTGCACAAGGGTTGAAGGCTTCGCGGTGA back to top
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