mRNA_H-paniculata_contig13917.2401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 204 bits (518), Expect = 4.570e-59 Identity = 119/285 (41.75%), Postives = 171/285 (60.00%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPF-SRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGR-REKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVI-SSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGH-GLEGFIDADWAEDVKDRKSITGYVFKLNGGAI 843 MDV+ AYL + +EE+++VK PP + + S +V LRKSLYGLKQSGRNW+ +D + G G S+ D CLY GE L++ +YVDDL I RE V +FKH IS+ F MKDL + +LG ++RDR ++ ISQ YI +L +F +C+ V T +EG L + +G+ V +EY +VGSL+YA+ TRPDIA+AV + ++ E + KR+ R L ++G+ + G S G L G+ DAD+A D +R+S +GY F L+ G I Sbjct: 84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKM--DGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEI 365
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI) HSP 1 Score: 198 bits (504), Expect = 2.500e-57 Identity = 114/290 (39.31%), Postives = 173/290 (59.66%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAG-RREKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKV---LAP--EGRRVISSE--YRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 +DV A+L +EEE+++ L PE F + +V L+KSLYGLKQ+ R W D +++ +G +R + D C YF R G Y+++ +YVDD+ +AG +++V E K +++ F MKDLG +++LG ++ RDR N + +SQ Y+++ L RF+ + + + T + N K+ + P E R+ S Y VGSLM+A TRPDIA AV +R M +P RE +ST KR+ R + + + FGG L G++D+D+A D RKS TGYVF L GGA+S Sbjct: 92 LDVKTAFLHGDLEEEIYM-LQPEGFAETGKENLVCRLKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRSG-GNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSYLT--LRGYVDSDYAGDPDKRKSTTGYVFTLAGGAVS 377
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS) HSP 1 Score: 196 bits (499), Expect = 1.190e-56 Identity = 113/287 (39.37%), Postives = 169/287 (58.89%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR-EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLA-PEGRRVISSE---YRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 MDV A+L +++EL+++ PE F +D V L+KSLYGLKQS R WN ++F++G RS DSC+Y + E G YLL+ YVDD+ +A + ++ + K +S F MKD+G SR+LG ++RRDR G++ +SQ Y+ +V+++F E + V T + G+ K+ A E I +E Y +VGS+MYA GTRPDIAYA+ + M P + K L R + + DL + F K+ ++G+ D+D+A D RKS +GYVF + G IS Sbjct: 14 MDVKTAFLHGDLDQELYME-QPEGFEVDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFIIGEKFVRSHQDSCVYVKKVESGYMYLLL--YVDDILMAAKDIAEIVKLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSAVTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAIGLVSMFMSKPGMMHWEAVKWLLRYIKGSSDLEVVF-TKNKNFNIQGYCDSDFAGDRDKRKSTSGYVFTVGGNTIS 296
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 205 bits (522), Expect = 2.260e-56 Identity = 120/291 (41.24%), Postives = 168/291 (57.73%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRREKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGV-----PTSVEGNLKVLAPEGRRVISS----EYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 MDV +AYL +EE ++++LPP F P + +V L+K+LYGLKQ+GR W L + +G R D +++ R+ GE+ ++VA VDDL I G + VD F I QRF M DLG + +LG E+RRDR + ISQ YI ++ RF+ DE + P S GN + +P R YR VGSLMYA+ GTRPDI +AV ++ M++P R + KR+ R L + +L + +G +N GL G+ DADW + R SI+GYVF L+GGAIS Sbjct: 1140 MDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQ--SPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYG--TNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAIS 1423
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL) HSP 1 Score: 195 bits (496), Expect = 2.550e-56 Identity = 110/290 (37.93%), Postives = 170/290 (58.62%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAI-AGRREKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSV--EGNLKVL-----APEGRRVISSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 MD+ AYL ++EE++++ PP F V L+KS+YGL QSGR+WN D + +GL ++ D+C+Y+ R+ GE + V V+VDDL I A +++ + + + F MKD+G +++G E+ RDR G V +SQ YI +L R+ F V T + + N K+ AP + +EY+ M+G LMYA+ TRPDIAYAV + ++ +P E + CKR+FR LS + G+ +G + +G EG+ DAD+A ++ DRKSI+GY + L G A + Sbjct: 1 MDIRGAYLNGELKEEVYMRQPPGF---EDGTGRVWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYY-RERDGEQ-VWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFA 285
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 199 bits (507), Expect = 4.400e-56 Identity = 106/278 (38.13%), Postives = 165/278 (59.35%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRD-IPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR-EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVISSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKL 828 MDV A+L ++ E+F++ P F S + + +V+ L+KSLYGLKQSGRNWN +LDE+L+ G R+ D C+Y + + GE ++V ++VDDL IA +K+ +FK + +FRMKDLG +S LG ++ NG++ ++Q RYI+++L RF +C+ T E + ++ + +V YR +VGSL+Y T TRPDI++ V + ++++ P ED T K + R L + + + F L + DADWA + DR S TGY F L Sbjct: 279 MDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMS-DSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLEDLVTAKHVLRYLKGSMEHELCFRKCDGELNLIAYTDADWASSLDDRHSTTGYCFSL 551
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 204 bits (519), Expect = 5.550e-56 Identity = 116/287 (40.42%), Postives = 170/287 (59.23%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR-EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLA-PEGRRVISSE---YRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 MDV A+L +++ELF++ PE F +D V L+KSLYGLKQS R WN ++F+ G RS DSC+Y + E G YLL+ YVDD+ IA + ++D K +S F MKD+G+ SR+LG +++RDR G++ +SQ Y+ +V+KRF+ E + V T + G+ K+ A E I +E Y VGS+MYA GTRPDIAYA+ +R M P + K L R + DL + F K+ ++G+ D+D+A D+ R+S +GYVF + G +S Sbjct: 950 MDVKTAFLHGDLDQELFME-QPEGFEVDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKPGIMHWEAVKWLLRYIRGTADLNLVF-TKNKNFSVQGYCDSDFAGDLDRRRSTSGYVFTVGGNTVS 1232
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.270e-55 Identity = 117/283 (41.34%), Postives = 169/283 (59.72%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDI-PIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGR-REKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVI-SSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGH-GLEGFIDADWAEDVKDRKSITGYVFKLNGG 837 MDVD AYL + +EE++++K PP + + + +V LRKSLYGLKQSGRNW+ +D + G GL S D CLY GE L++ +YVDDL I R D+FK IS+ F MKDL + +LG ++R+R N + ISQ YI +L +F +C+ V T +EG L + +G+ V +EY +VGSL+YA+ TRPDIA+AV + ++ +E + KR+ R L D+G+ + G S G L G+ DAD+A D +R+S +GY F L+ G Sbjct: 304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKM--DGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHG 583
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 193 bits (490), Expect = 1.980e-55 Identity = 110/289 (38.06%), Postives = 166/289 (57.44%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFF----PFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGR-REKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVISSEY--RGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 +DVD A+L VEEEL++ P F P + + L ++LYG KQ+ R WN+ L++ L G G RS D C+Y R + + ++ VYVDDL I R + ++ E K + + F +K+LG + LG E+ R+R + ++++Q YI+ + ++F ++C+ V T + N K++ P V Y R +VG+LMY +T TRPDIA AV + A+ E + + KR+ + L T DLG+ F G + G L G+ DA WA D+ R+S TGYVF LNG AIS Sbjct: 6 VDVDTAFLYGDVEEELYMDQPDGFEDQVNPTKKCL-----LMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSD--SKFSIIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAIS 286
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 199 bits (506), Expect = 2.000e-55 Identity = 111/285 (38.95%), Postives = 170/285 (59.65%), Query Frame = 1 Query: 1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRRE-KVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGN--LKVLAPEGRRVISSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846 MDV A+L ++EE+++K F ++ +V LR+S+YGLKQS R WN++LD L +G ++T D C+Y ++E GE ++ +AVYVDD+ +AG+ + K++E K ++++F+MKD+G + LG ++ + + I Q Y + VL+RF + + T V LK A + +RV Y+ VG L+Y ST TRPDIAYAV AR DP E + KR+ R L+ D+G+ + G G+ DADWA D+ DRKS +GYVF+++ AIS Sbjct: 92 MDVTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAIS 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13917.2401.1 >prot_H-paniculata_contig13917.2401.1 ID=prot_H-paniculata_contig13917.2401.1|Name=mRNA_H-paniculata_contig13917.2401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNback to top mRNA from alignment at H-paniculata_contig13917:4636..5562+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13917.2401.1 ID=mRNA_H-paniculata_contig13917.2401.1|Name=mRNA_H-paniculata_contig13917.2401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig13917:4636..5562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13917:4636..5562+ >mRNA_H-paniculata_contig13917.2401.1 ID=mRNA_H-paniculata_contig13917.2401.1|Name=mRNA_H-paniculata_contig13917.2401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig13917:4636..5562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |