mRNA_H-paniculata_contig13917.2401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13917.2401.1
Unique NamemRNA_H-paniculata_contig13917.2401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.570e-59
Identity = 119/285 (41.75%), Postives = 171/285 (60.00%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPF-SRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGR-REKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVI-SSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGH-GLEGFIDADWAEDVKDRKSITGYVFKLNGGAI 843
            MDV+ AYL + +EE+++VK PP +  + S    +V  LRKSLYGLKQSGRNW+  +D +  G G   S+ D CLY      GE  L++ +YVDDL I    RE V +FKH IS+ F MKDL  +  +LG  ++RDR   ++ ISQ  YI  +L +F   +C+ V T +EG L  +  +G+ V   +EY  +VGSL+YA+  TRPDIA+AV    + ++    E +   KR+ R L    ++G+ + G S G   L G+ DAD+A D  +R+S +GY F L+ G I
Sbjct:   84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKM--DGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYAFTLSHGEI 365          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 198 bits (504), Expect = 2.500e-57
Identity = 114/290 (39.31%), Postives = 173/290 (59.66%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAG-RREKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKV---LAP--EGRRVISSE--YRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            +DV  A+L   +EEE+++ L PE F  +    +V  L+KSLYGLKQ+ R W    D +++ +G +R + D C YF R   G  Y+++ +YVDD+ +AG  +++V E K  +++ F MKDLG  +++LG ++ RDR N  + +SQ  Y+++ L RF+  + + + T +  N K+   + P  E  R+  S   Y   VGSLM+A   TRPDIA AV   +R M +P RE +ST KR+ R +    +  + FGG      L G++D+D+A D   RKS TGYVF L GGA+S
Sbjct:   92 LDVKTAFLHGDLEEEIYM-LQPEGFAETGKENLVCRLKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRSG-GNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSYLT--LRGYVDSDYAGDPDKRKSTTGYVFTLAGGAVS 377          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS)

HSP 1 Score: 196 bits (499), Expect = 1.190e-56
Identity = 113/287 (39.37%), Postives = 169/287 (58.89%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR-EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLA-PEGRRVISSE---YRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            MDV  A+L   +++EL+++  PE F   +D   V  L+KSLYGLKQS R WN   ++F++G    RS  DSC+Y  + E G  YLL+  YVDD+ +A +   ++ + K  +S  F MKD+G  SR+LG ++RRDR  G++ +SQ  Y+ +V+++F   E + V T + G+ K+ A  E    I +E   Y  +VGS+MYA  GTRPDIAYA+   +  M  P    +   K L R +  + DL + F  K+    ++G+ D+D+A D   RKS +GYVF + G  IS
Sbjct:   14 MDVKTAFLHGDLDQELYME-QPEGFEVDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFIIGEKFVRSHQDSCVYVKKVESGYMYLLL--YVDDILMAAKDIAEIVKLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSAVTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAIGLVSMFMSKPGMMHWEAVKWLLRYIKGSSDLEVVF-TKNKNFNIQGYCDSDFAGDRDKRKSTSGYVFTVGGNTIS 296          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 205 bits (522), Expect = 2.260e-56
Identity = 120/291 (41.24%), Postives = 168/291 (57.73%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRREKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGV-----PTSVEGNLKVLAPEGRRVISS----EYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            MDV +AYL   +EE ++++LPP F P  +   +V  L+K+LYGLKQ+GR W   L   +  +G  R   D  +++ R+  GE+ ++VA  VDDL I G  + VD F   I QRF M DLG +  +LG E+RRDR    + ISQ  YI  ++ RF+ DE   +     P S  GN +  +P   R         YR  VGSLMYA+ GTRPDI +AV   ++ M++P R  +   KR+ R L  + +L + +G  +N  GL G+ DADW    + R SI+GYVF L+GGAIS
Sbjct: 1140 MDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQ--SPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYG--TNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAIS 1423          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 195 bits (496), Expect = 2.550e-56
Identity = 110/290 (37.93%), Postives = 170/290 (58.62%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAI-AGRREKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSV--EGNLKVL-----APEGRRVISSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            MD+  AYL   ++EE++++ PP F         V  L+KS+YGL QSGR+WN   D  +  +GL ++  D+C+Y+ R+  GE  + V V+VDDL I A  +++ +  +  +   F MKD+G   +++G E+ RDR  G V +SQ  YI  +L R+ F     V T +  + N K+      AP     + +EY+ M+G LMYA+  TRPDIAYAV + ++   +P  E  + CKR+FR LS   + G+ +G + +G   EG+ DAD+A ++ DRKSI+GY + L G A +
Sbjct:    1 MDIRGAYLNGELKEEVYMRQPPGF---EDGTGRVWRLKKSIYGLHQSGRDWNREFDRKVQSVGLTKTAADNCVYY-RERDGEQ-VWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFA 285          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 199 bits (507), Expect = 4.400e-56
Identity = 106/278 (38.13%), Postives = 165/278 (59.35%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRD-IPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR-EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVISSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKL 828
            MDV  A+L   ++ E+F++ P  F   S + + +V+ L+KSLYGLKQSGRNWN +LDE+L+  G  R+  D C+Y  + + GE  ++V ++VDDL IA    +K+ +FK  +  +FRMKDLG +S  LG   ++   NG++ ++Q RYI+++L RF   +C+   T  E   + ++ +  +V    YR +VGSL+Y  T TRPDI++ V + ++++  P  ED  T K + R L  + +  + F        L  + DADWA  + DR S TGY F L
Sbjct:  279 MDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMS-DSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLEDLVTAKHVLRYLKGSMEHELCFRKCDGELNLIAYTDADWASSLDDRHSTTGYCFSL 551          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 204 bits (519), Expect = 5.550e-56
Identity = 116/287 (40.42%), Postives = 170/287 (59.23%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR-EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLA-PEGRRVISSE---YRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            MDV  A+L   +++ELF++  PE F   +D   V  L+KSLYGLKQS R WN   ++F+ G    RS  DSC+Y  + E G  YLL+  YVDD+ IA +   ++D  K  +S  F MKD+G+ SR+LG +++RDR  G++ +SQ  Y+ +V+KRF+  E + V T + G+ K+ A  E    I +E   Y   VGS+MYA  GTRPDIAYA+   +R M  P    +   K L R +    DL + F  K+    ++G+ D+D+A D+  R+S +GYVF + G  +S
Sbjct:  950 MDVKTAFLHGDLDQELFME-QPEGFEVDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKPGIMHWEAVKWLLRYIRGTADLNLVF-TKNKNFSVQGYCDSDFAGDLDRRRSTSGYVFTVGGNTVS 1232          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.270e-55
Identity = 117/283 (41.34%), Postives = 169/283 (59.72%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDI-PIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGR-REKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVI-SSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGH-GLEGFIDADWAEDVKDRKSITGYVFKLNGG 837
            MDVD AYL + +EE++++K PP +  +  +   +V  LRKSLYGLKQSGRNW+  +D +  G GL  S  D CLY      GE  L++ +YVDDL I    R   D+FK  IS+ F MKDL  +  +LG  ++R+R N  + ISQ  YI  +L +F   +C+ V T +EG L  +  +G+ V   +EY  +VGSL+YA+  TRPDIA+AV    + ++   +E +   KR+ R L    D+G+ + G S G   L G+ DAD+A D  +R+S +GY F L+ G
Sbjct:  304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKM--DGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHG 583          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 193 bits (490), Expect = 1.980e-55
Identity = 110/289 (38.06%), Postives = 166/289 (57.44%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFF----PFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGR-REKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGNLKVLAPEGRRVISSEY--RGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            +DVD A+L   VEEEL++  P  F     P  + +     L ++LYG KQ+ R WN+ L++ L G G  RS  D C+Y  R +    + ++ VYVDDL I  R + ++ E K  + + F +K+LG +   LG E+ R+R +  ++++Q  YI+ + ++F  ++C+ V T  + N K++ P    V    Y  R +VG+LMY +T TRPDIA AV + A+  E   +  +   KR+ + L T  DLG+ F G + G  L G+ DA WA D+  R+S TGYVF LNG AIS
Sbjct:    6 VDVDTAFLYGDVEEELYMDQPDGFEDQVNPTKKCL-----LMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSD--SKFSIIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAIS 286          
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 199 bits (506), Expect = 2.000e-55
Identity = 111/285 (38.95%), Postives = 170/285 (59.65%), Query Frame = 1
Query:    1 MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRNWNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRRE-KVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREVLKRFDFDECRGVPTSVEGN--LKVLAPEGRRVISSEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHGLEGFIDADWAEDVKDRKSITGYVFKLNGGAIS 846
            MDV  A+L   ++EE+++K    F    ++  +V  LR+S+YGLKQS R WN++LD  L  +G  ++T D C+Y  ++E GE ++ +AVYVDD+ +AG+ + K++E K  ++++F+MKD+G +   LG ++     +  + I Q  Y + VL+RF  +  +   T V     LK  A + +RV    Y+  VG L+Y ST TRPDIAYAV   AR   DP  E +   KR+ R L+   D+G+ + G        G+ DADWA D+ DRKS +GYVF+++  AIS
Sbjct:   92 MDVTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAIS 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13917.2401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TCB8_9STRA4.570e-5941.75Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A2Z7AL20_9LAMI2.500e-5739.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2KZJ0_9BRAS1.190e-5639.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8RWY5_9APHY2.260e-5641.24Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A146H7K8_MYCCL2.550e-5637.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT4.400e-5638.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3F7G4_NOCCA5.550e-5640.42Retrovirus-related Pol polyprotein from transposon... [more]
W7TJ26_9STRA1.270e-5541.34Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
H3GB17_PHYRM1.980e-5538.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT2.000e-5538.95Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13917contigH-paniculata_contig13917:4636..5562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue8.7e-47
Seed eggNOG ortholog67593.Physo127720
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size846
Cds size846
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.3880565-CDS-H-paniculata_contig13917:4635..51621622929105.3880565-CDS-H-paniculata_contig13917:4635..5162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13917 4636..5162 +
1691480733.4520705-CDS-H-paniculata_contig13917:4635..51621691480733.4520705-CDS-H-paniculata_contig13917:4635..5162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13917 4636..5162 +
1622929105.4015644-CDS-H-paniculata_contig13917:5243..55621622929105.4015644-CDS-H-paniculata_contig13917:5243..5562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13917 5244..5562 +
1691480733.4640715-CDS-H-paniculata_contig13917:5243..55621691480733.4640715-CDS-H-paniculata_contig13917:5243..5562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13917 5244..5562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13917.2401.1prot_H-paniculata_contig13917.2401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13917 4636..5562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13917.2401.1

>prot_H-paniculata_contig13917.2401.1 ID=prot_H-paniculata_contig13917.2401.1|Name=mRNA_H-paniculata_contig13917.2401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MDVDAAYLIAAVEEELFVKLPPEFFPFSRDIPIVHHLRKSLYGLKQSGRN
WNNILDEFLVGIGLDRSTTDSCLYFSRDERGETYLLVAVYVDDLAIAGRR
EKVDEFKHGISQRFRMKDLGSVSRVLGTELRRDRPNGIVIISQGRYIREV
LKRFDFDECRGVPTSVEGNLKVLAPEGRRVISSEYRGMVGSLMYASTGTR
PDIAYAVHQAARRMEDPCREDFSTCKRLFRCLSTAPDLGITFGGKSNGHG
LEGFIDADWAEDVKDRKSITGYVFKLNGGAIS
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mRNA from alignment at H-paniculata_contig13917:4636..5562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13917.2401.1 ID=mRNA_H-paniculata_contig13917.2401.1|Name=mRNA_H-paniculata_contig13917.2401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig13917:4636..5562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCGTATTTGATTGCCGCGGTAGAAGAAGAGCTGTT TGTTAAGCTACCCCCCGAATTTTTCCCTTTTTCTCGAGACATACCGATTG TACACCACCTGCGTAAAAGTCTGTACGGCCTCAAGCAGAGCGGCCGAAAC TGGAATAACATTCTCGACGAGTTTCTTGTTGGGATAGGACTCGACCGTTC CACTACCGACTCATGCTTGTACTTTTCCCGCGACGAAAGGGGAGAGACAT ACCTTCTCGTGGCCGTGTATGTTGACGACCTGGCCATCGCTGGTCGTCGT GAGAAAGTAGACGAGTTCAAGCACGGTATAAGTCAGCGTTTCAGGATGAA GGACTTGGGCTCTGTCTCACGTGTGTTGGGAACAGAACTACGACGTGACC GCCCCAATGGTATCGTAATCATCTCGCAGGGTAGGTACATCCGCGAGGTA CTGAAAAGATTTGATTTTGACGAGTGTCGAGGGGTGCCCACCTCTGTAGA AGGAAACCTGAAGGTTTTGGCACCCGAGTCGGCCGACAAACCCTCCGAAC CGAATTCACTTGGAGCTGTACTATCGGACATAGGCGCAGGAGTACAAGAA AACAGCAGAGGGAGAAGGGTCATTTCATCTGAATACAGAGGCATGGTAGG ATCACTCATGTACGCCTCGACAGGAACTAGGCCTGATATAGCATACGCGG TACACCAAGCAGCACGTCGTATGGAGGATCCATGTCGAGAAGACTTCAGT ACATGCAAGCGCCTTTTTCGTTGTCTCAGTACTGCACCTGACCTCGGCAT TACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCATTGACG CCGATTGGGCGGAAGATGTCAAGGACCGAAAGTCCATAACAGGATACGTT TTCAAGCTGAACGGTGGTGCAATAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig13917:4636..5562+

>mRNA_H-paniculata_contig13917.2401.1 ID=mRNA_H-paniculata_contig13917.2401.1|Name=mRNA_H-paniculata_contig13917.2401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig13917:4636..5562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCGTATTTGATTGCCGCGGTAGAAGAAGAGCTGTT
TGTTAAGCTACCCCCCGAATTTTTCCCTTTTTCTCGAGACATACCGATTG
TACACCACCTGCGTAAAAGTCTGTACGGCCTCAAGCAGAGCGGCCGAAAC
TGGAATAACATTCTCGACGAGTTTCTTGTTGGGATAGGACTCGACCGTTC
CACTACCGACTCATGCTTGTACTTTTCCCGCGACGAAAGGGGAGAGACAT
ACCTTCTCGTGGCCGTGTATGTTGACGACCTGGCCATCGCTGGTCGTCGT
GAGAAAGTAGACGAGTTCAAGCACGGTATAAGTCAGCGTTTCAGGATGAA
GGACTTGGGCTCTGTCTCACGTGTGTTGGGAACAGAACTACGACGTGACC
GCCCCAATGGTATCGTAATCATCTCGCAGGGTAGGTACATCCGCGAGGTA
CTGAAAAGATTTGATTTTGACGAGTGTCGAGGGGTGCCCACCTCTGTAGA
AGGAAACCTGAAGGTTTTGGCACCCGAATGGACGTAGATGCGGCGTATTT
GATTGCCGCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAATTTT
TCCCTTTTTCTCGAGACATACCGATTGTACACCACCTGCGTAAAAGTCTG
TACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACATTCTCGACGAGTT
TCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACTCATGCTTGTACT
TTTCCCGCGACGAAAGGGGAGAGACATACCTTCTCGTGGCCGTGTATGTT
GACGACCTGGCCATCGCTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCA
CGGTATAAGTCAGCGTTTCAGGATGAAGGACTTGGGCTCTGTCTCACGTG
TGTTGGGAACAGAACTACGACGTGACCGCCCCAATGGTATCGTAATCATC
TCGCAGGGTAGGTACATCCGCGAGGTACTGAAAAGATTTGATTTTGACGA
GTGTCGAGGGGTGCCCACCTCTGTAGAAGGAAACCTGAAGGTTTTGGCAC
CCGAAGGGAGAAGGGTCATTTCATCTGAATACAGAGGCATGGTAGGATCA
CTCATGTACGCCTCGACAGGAACTAGGCCTGATATAGCATACGCGGTACA
CCAAGCAGCACGTCGTATGGAGGATCCATGTCGAGAAGACTTCAGTACAT
GCAAGCGCCTTTTTCGTTGTCTCAGTACTGCACCTGACCTCGGCATTACG
TTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCATTGACGCCGA
TTGGGCGGAAGATGTCAAGGACCGAAAGTCCATAACAGGATACGTTTTCA
AGCTGAACGGTGGTGCAATAAGTAGGGAGAAGGGTCATTTCATCTGAATA
CAGAGGCATGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGGCCTG
ATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGAGGATCCATGT
CGAGAAGACTTCAGTACATGCAAGCGCCTTTTTCGTTGTCTCAGTACTGC
ACCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGG
AAGGATTCATTGACGCCGATTGGGCGGAAGATGTCAAGGACCGAAAGTCC
ATAACAGGATACGTTTTCAAGCTGAACGGTGGTGCAATAAGT
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